Life Sciences Commons^™

Are Circadian Cycles The Dominant Proteome Rhythym In The Intertidal Mussel Mytilus Californianus?, Kristina M. Koster, Cory Elowe, Lars Tomanek

STAR Program Research Presentations

Mytilus californianus, also known as the California mussel, is a marine bivalve that is abundant along the West coast from Alaska to southern Baja California. They mainly reside in the upper-middle intertidal zone and cling to pier pilings and surf exposed rocks. They create multi-layered beds, which form a habitat for algae and many species of invertebrates. Intertidal mussels live in a naturally dynamic environment. It has previously been reported (Connor and Gracey, 2011) that the 24-hour circadian (day to night) rhythm of the intertidal mussel Mytilus californianus is primarily responsible for its rhythmic gene expression, as opposed to …

Size Frequency Variation Of An Emerging Fisheries Species Across Its Biogeographical Range, Katie O. Grady, Jenny Greene, Crow White

STAR Program Research Presentations

Kellet's whelk (Kelletia kelletii), a large subtidal gastropod is the basis for an emerging bycatch fishery in California. This commercial fishery has increased dramatically in the past two decades, but there is little biological information available to inform its management. There are currently no size limits and only seasonal restrictions for commercial and recreational fishing for Kellet’s whelk in California with annual total allowable catch at 100,000 pounds. After surveying 28 subtidal rocky reefs across the Kellet’s whelk range, our results indicate large natural variation in size frequencies, specifically between the mainland and island populations. Designing harvesting strategies …

Sea Turtle Hatchling Sex Ratios Determined Via Hormone Assay: Implications Of Climate Change?, William A. Hilton, Matthew Godfrey, Camryn D. Allen

STAR Program Research Presentations

Currently all species of sea turtles are listed as threatened or endangered with extinction under the U.S. Endangered Species Act. Due to their status, sea turtle conservation is a high priority for the U.S. National Marine Fisheries Service and U.S. Fish and Wildlife Service. One major challenge conservationists face is the lack of a noninvasive, cost efficient method for determining the sex of hatchling sea turtles. Because secondary sex characteristics (i.e. males have longer tails) are not evident until turtles start to reach sexual maturity, the sex of hatchlings is not easily determined. The least invasive way to determine the …

Father Convict Cichlids Bite Intruders More Often In Hot Temperatures, Jesse L. Heckendorf

STAR Program Research Presentations

Convict cichlids (Archocentrus nigrofasciatus) have evolved to be extremely good parents by protecting their brood. Parental care leads to aggressive biting, chasing, and gill flaring to intimidate predators. In this experiment, we show that environmental factors, such as the changing of temperature in this case, affect a male convict cichlid’s aggression toward caring for his offspring when an intruder is introduced. Male convict cichlids attack more in warmer water.

Bacterial Expression Of Plant Pyruvate Kinase, Kristina Fuller

STAR Program Research Presentations

Pyruvate kinases serve an important role in regulating glycolysis pathways. Different pyruvate kinase isozymes can dictate which of several different products will be formed during the final step of glycolysis. Being able to reliably copy active pyruvate kinases (PK) would allow study of the different isozymes, with the goal of eventually creating plants that are more nutritionally beneficial for humans. This study focused on improving the protocol for replicating each of two isolated PK isozymes from the model plant Arabidopsis thaliana. Previous attempts had resulted in the PK denaturing and consequently precipitating out of solution and so we manipulated the …

Immobilization And Phytotoxicity Reduction Of Heavy Metals In Serpentine Soil Using Biochar, I. Herath, P. Kumarathilaka, A. Navarantne, N. Rajakaruna, M. Vithanage

Biological Sciences

Purpose

Serpentine soils derived from ultramafic rocks release elevated concentrations of toxic heavy metals into the environment. Hence, crop plants cultivated in or adjacent to serpentine soil may experience reduced growth due to phytotoxicity as well as accumulate toxic heavy metals in edible tissues. We investigated the potential of biochar (BC), a waste byproduct of bioenergy industry in Sri Lanka, as a soil amendment to immobilize Ni, Cr, and Mn in serpentine soil and minimize their phytotoxicity.

Materials and methods

The BC used in this study was a waste byproduct obtained from a Dendro bioenergy industry in Sri Lanka. This …

The Effects Of Slow-Release Aluminum Sulfate On Bloom Color Of Hydrangea Macrophylla, Patrick James Edziak

Horticulture and Crop Science

Hydrangea macrophylla is a common greenhouse crop typically produced for the late winter and spring holidays. Most varieties are capable of producing either pink or blue flowers depending on aluminum content and pH of the growing medium. The goal of this experiment was to examine the effects of new controlled-release aluminum sulfate products on bloom color. This new product was applied as a topdress and a pre-plant incorporated mix using two different manufacturer recommended rates. Results were directly compared with those produced using a traditional water-soluble aluminum sulfate drench application. Controlled release aluminum sulfate was found to be at least …

Bacterial Expression Of Plant Pyruvate Kinase, Kristina Fuller

STAR Program Research Presentations

Pyruvate kinases serve an important role in regulating glycolysis pathways. Different pyruvate kinase isozymes can dictate which of several different products will be formed during the final step of glycolysis. Being able to reliably copy active pyruvate kinases (PK) would allow study of the different isozymes, with the goal of eventually creating plants that are more nutritionally beneficial for humans. This study focused on improving the protocol for replicating each of two isolated PK isozymes from the model plant Arabidopsis thaliana. Previous attempts had resulted in the PK denaturing and consequently precipitating out of solution and so we manipulated the …

Protemic Identification Of Germline Proteins In Caenorhabditis Elegans, B Elizabeth Turner, Sophia M. Basecke, Grace E. Bazan, Eric S. Dodge, Cassy M. Haire, Dylan J. Heussman, Chelsey L. Johnson, Chelsea K. Mukai, Adrianna M. Naccarati, Sunny-June Norton, Jennifer R. Sato, Chihara O. Talavera, Michael V. Wade, Kenneth J. Hillers

Biological Sciences

Sexual reproduction involves fusion of 2 haploid gametes to form diploid offspring with genetic contributions from both parents. Gamete formation represents a unique developmental program involving the action of numerous germline-specific proteins. In an attempt to identify novel proteins involved in reproduction and embryonic development, we have carried out a proteomic characterization of the process in Caenorhabditis elegans. To identify candidate proteins, we used 2D gel electrophoresis (2DGE) to compare protein abundance in nucleus-enriched extracts from wild-type C. elegans, and in extracts from mutant worms with greatly reduced gonads (glp-4(bn2) worms reared at 25°C); 84 proteins whose …

Spatial Clustering Of Physical Activity And Obesity In Relation To Built Environment Factors Among Older Women In Three U.S. States, Kosuke Tamura, Robin C. Puett, Jaime E. Hart, Heather A. Starnes, Francine Laden, Philip J. Troped

Kinesiology and Public Health

Background

Identifying spatial clusters of chronic diseases has been conducted over the past several decades. More recently these approaches have been applied to physical activity and obesity. However, few studies have investigated built environment characteristics in relation to these spatial clusters. This study’s aims were to detect spatial clusters of physical activity and obesity, examine whether the geographic distribution of covariates affects clusters, and compare built environment characteristics inside and outside clusters.

Methods

In 2004, Nurses’ Health Study participants from California, Massachusetts, and Pennsylvania completed survey items on physical activity (N = 22,599) and weight-status (N = 19,448). The spatial …

Agricultural Experiences And Factors Of Undergraduates Who Enroll In A College Of Agriculture, Benjamin G. Swan, Ann M. De Lay

Agricultural Education and Communication

Industry partners and College of Agriculture, Food and Environmental Sciences (CAFES) faculty have observed students entering the college possessed fewer agriculture experiences and skills than their predecessors. They have also lamented the increasing pressure to develop industry-ready students, when the gaps are ever wider between their experience and skills entering college and what are required upon graduation. During the 2011 spring quarter, all CAFES students (N = 3,366) were sent an electronic survey that resulted in 911 responses (27% response rate). Three quarters of the students were female and one third were seniors. Prior to enrolling at the university, 34% …

Ag In Motion, Kerri Bermudez, Annelise Jensch, Michaela Stone

Agricultural Education and Communication

The purpose of this project was to gauge the interest levels of Ag in Motion for the Central Coast. Positive feedback would allow the project to continue on after this project is finished. Ag in Motion is an important asset to middle school aged children because they have the opportunity to learn about agriculture and it’s value. This is especially important considering California is number one producer of agricultural commodities in the United States.

The Central Coast is defined as these three counties: Monterey County, San Luis Obispo County, and Santa Barbara County. An online survey was developed and sent …

Seasonal Variation Of Milk In Central Valley California And The Association Of Milk Variation With The Composition And Texture Of Low Mositure Part Skim Mozzarella, Vaideki Jai

Master's Theses

The chemical composition of milk (specifically casein, fat, and calcium) is known to affect the quality and functional properties of Mozzarella cheese. Therefore, concentrations of total nitrogen, casein nitrogen, non-casein nitrogen, non-protein nitrogen, true nitrogen, casein nitrogen to total nitrogen ratio, casein nitrogen to true nitrogen ratio, fat, total calcium, total solids, somatic cells, and pH were measured in silo milk samples collected weekly over 18-months from a large dairy plant in Central Valley, California from July 2008 to December 2009 to verify changes and correlate to low moisture part skim Mozzarella (LMPS) characteristics. LMPS mozzarella cheese from the same …

Pacific Plug & Liner Crop Shrinkage Evaluation, Jillian Balli

Horticulture and Crop Science

Crop Shrinkage has a major impact on a company’s bottom line. There are many ways to combat shrinkage. This report focuses on shrinkage reduction by adjusting buffer planting numbers to reflect the actual number of plants lost in production. Inaccurate buffer can cause the cost of production to be inaccurate as well. This report evaluates crop shrinkage of a greenhouse located in Watsonville, CA called Pacific Plug & Liner.

Root Stimulation Using Vermi-Products In Grape Vine Propagations, Katerina M. Flores

Wine and Viticulture

Vermi-products are byproducts produced from earthworms digesting and decomposing a natural material into another. Liquid teas or extracts of vermi-products are another form of leachate material found in the completed compost bin. These products are not high in essential plant macronutrients, have an average neutral pH (around 7.0), and are known for living microbial population. Grapevine propagations cut from the Trestle Vineyard at California Polytechnic State University, San Luis Obispo were used to observe root growth development using steer compost, vermicompost, and vermi-extract. Propagations used were dormant Pinot Noir clone 777. Compost subsamples tested 5%, 10%, 20%, and 40% by …

Spatial And Temporal Comparisons Of Gopher Rockfish (Sebastes Carnatus) Life History And Condition In South Central California, Natasha Leigh Meyers-Cherry

Master's Theses

Recent studies have shown environmental factors influence life history traits in fishes. Understanding intraspecific variability of life history characteristics and condition is necessary to determine local fisheries management strategies. Gopher rockfish, Sebastes carnatus, comprise 50% of the estimated shallow nearshore recreational rockfish catch in California, yet insufficient local data exist regarding life history traits and condition of this species. Our study locally defines growth parameters (maximum size and age), size (age) at reproductive maturity, and condition (hepatosomatic indices) for gopher rockfish in south central California. The growth parameter values of gopher rockfish from our study are similar to previously …

Evaluating Five Years Of Soil Hydrologic Response Following The 2009 Lockheed Fire In The Coastal Santa Cruz Mountains Of California, Mary Theresa Crable

Master's Theses

The Lockheed Fire burned 31 km² (7,660 acres) of the Scotts Creek watershed in August 2009. 4.5 km² (1,100 acres) of California Polytechnic State University’s educational and research facility at Swanton Pacific Ranch. The burned region presented an opportunity for studying the hydrologic response of burned soils in the Santa Cruz Mountains where there is insufficient post-fire studies regarding fire-effects on watershed processes such as infiltration and near-surface runoff. Soil infiltration and soil water repellency were evaluated with rainfall simulations, Mini-disk Infiltrometer (MDI) and water drop penetration time tests (WDPT) at sites represented by variations in burn severity, …

Fresh Bytes - Connected Hydroponics For Small-Scale Growing, Jack Bowen

Liberal Arts and Engineering Studies

Many users are now transitioning to small-scale hydroponics and aquaponics at home. There can be a barrier to entry with these systems as there is a delicate balance of chemicals, pH, etc. that must be maintained. There are sensors for these various components but they are either aimed at commercial production or are un-automated. Fresh Bytes is a microcomputer with sensors to detect all of these unseen components in a hydroponic system. A prototype of this microcomputer is produced along with CAD plans for more professional versions of it. The sensors are verified and future development is contemplated.

Wildlife Deterrence Method Test Device, Garrett Tietz, Adam Webb, Dane Knutson

Mechanical Engineering

The objective of the Deer Busters team is to design and build a device or system of devices that will be used to determine which method, or methods, are most effective at deer deterrence. JumpSport suspects that a method which gives the appearance of approach to the deer in an aggressive or startling manner but also changes the way it attacks so that the deer do not get used to the device will be most effective. Deer Busters is committed to the completion of the deer deterrent testing device by the end of the fall quarter of 2014.

Studies To Characterize Heavy Metal Content And Migration From Recycled Polyethyleneterephthalate, Michael John-Ross Whitt

Master's Theses

Packaging Materials account for 31% of the world’s municipal solid waste. Agencies like the Environmental Protection Agency (EPA) and the Agency for Toxic Substances and Disease Registry (ATSDR) are pushing for the increased use of recycled thermoplastic materials. Polyethylene terephthalate (PET) is a commonly recycled thermoplastic which is used to package ready-to-eat fruits and vegetables. Most recycled polyethylene terephthalate (RPET) packaging materials contain heavy metal catalysts, the most common being antimony. The recent increased use of recycled plastic materials has been suspected as the source of increased human heavy metal exposure. In this study, cadmium, chromium, nickel, lead and antimony …

Methane Production By A Packed-Bed Anaerobic Digester Fed Dairy Barn Flush Water, Sean Richard Thomson

Master's Theses

Packed-bed digesters are an alternative to covered lagoon digesters for methane production and anaerobic treatment of dilute wastewaters such as dairy barn flush water. The physical media of packed-beds retain biofilms, often allowing increased treatment rates. Previous studies have evaluated several types of media for digestion of dilute wastewaters, but cost and media fouling have setback commercial development. A major operational cost has been effluent recirculation pumping.

In the present effort, a novel approach to anaerobic digestion of flush dairy water was developed at pilot-scale: broken walnut shells were used as a low-cost packed-bed medium and effluent recirculation was replaced …

Traversing Swanton Road, 17th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

Developing A Website For The Cal Poly Rodeo Program, Audrey N. Pearce

Agricultural Education and Communication

The purpose of this project was to create an effective website for the Cal Poly Rodeo Program in order to improve communication with key audiences and ensure continued success for the organization. This website was intended to remain consistent with other Cal Poly websites, such as those listed on the Cal Poly College of Agriculture, Food and Environmental Sciences (CAFES) Student Life page under Clubs and Organizations, and was included on this page once created. A secondary purpose of the project was to give the Cal Poly Rodeo coach an easier way to recruit and contact potential student athletes. The …

Utilizing Indicator Of Reduction In Soils Tubes To Affirm A Serpentinitic Hydric Soil On The California Central Coast, Jason Demoss

Natural Resources Management and Environmental Sciences

Wetlands are vital ecosystems that are crucial in maintaining the life of rare and unique soils, plants, and animals. These ecosystems are key players in water storage, water filtration, carbon storage, and harboring unique species. Since the intervention of human development on the Earth’s surface, almost 50% of the Earth’s original wetlands have either been damaged or destroyed. The identification and assessment of both new and old wetlands is crucial in the survival of these precious ecosystems and their conservation. A 3 month-long study was performed to confirm the hydric status of a soil derived from serpentinitic parent material. The …

Factorial Validity Of An Abbreviated Neighborhood Environment Walkability Scale For Seniors In The Nurses’ Health Study, Heather A. Starnes, Meghan H. Mcdonough, Kosuke Tamura, Peter James, Francine Laden, Philip J. Troped

Kinesiology and Public Health

Background

Using validated measures of individuals’ perceptions of their neighborhood built environment is important for accurately estimating effects on physical activity. However, no studies to date have examined the factorial validity of a measure of perceived neighborhood environment among older adults in the United States. The purpose of this measurement study was to test the factorial validity of a version of the Abbreviated Neighborhood Environment Walkability Scale (NEWS-A) modified for seniors in the Nurses’ Health Study (NHS).

Findings

A random sample of 2,920 female nurses (mean age = 73 ± 7 years) in the NHS cohort from California, Massachusetts, and …

Diversity And Soil-Tissue Elemental Relations Of Vascular Plants Of Callahan Mine, Brooksville, Maine, U.S.A., Margaret R. Mansfield, Nathaniel S. Pope, Glen H. Mittelhauser, Nishanta Rajakaruna

Biological Sciences

Metal-contaminated soils provide numerous stressors to plant life, resulting in unique plant communities worldwide. The current study focuses on the vascular plants of Callahan Mine in Brooksville, ME, USA, a Superfund site contaminated with Cu, Zn, Pb, and other pollutants. One hundred and fifty-five taxa belonging to 50 families were identified, with the Asteraceae (21%), Poaceae (11%), and Rosaceae (9%) as the most species-rich families. Ninety-six species encountered at the Mine were native to North America (62%), including 11 taxa (7%) with rarity status in at least one New England state. Fifty-one species were non-native (33%), including nine taxa (6%) …

Estimating Migration Rates Between Populations Of Zostera Marina In The San Francisco Bay, Elizabeth S. Gutierrez

STAR Program Research Presentations

Eelgrass (Zostera marina) is a highly clonal marine angiosperm that can also reproduce sexually through flowering and seed formation. In a previous study, Fst values from six microsatellite loci suggested that a perennial San Francisco Bay subpopulation at Point Molate (Richmond, California) was able to recover from a drastic 2006 die-off through seed recruitment from neighboring eelgrass subpopulations, changing its reproductive strategy from clonal to sexual. Although Fst measures continue to be widely used in population genetics, the assumptions under which they operate are not always appropriate given certain circumstances, such small population sizes and/or asymmetrical migration rates. Our summer …

Evaluation Of Fungicides For Control Of Dollar Spot And Brown Patch Of Greens Height Creeping Bentgrass In Kansas, 2013, C. Thompson, R. Braun, M. Kennelly

Horticulture and Crop Science

No abstract provided.

Jellyfish Throwdown: Invasive Versus Native, Brooke Bemowski, Trisha Huynh, Lindsay J. Sullivan, Wim Kimmerer

STAR Program Research Presentations

The San Francisco Bay Estuary is home to many species of marine and wildlife that create a delicate ecological balance. Invasive jellyfish introduced to the bay though cargo shipping are believed to be competing with the endangered delta smelt for the same food source of copepods. Samples of zooplankton were taken from high and low salinity zones in the San Francisco Bay over three years in months June through February to correlate with the peak of the jellyfish lifecycle. The preserved samples are looked through and jellyfish are removed and recorded. The species of jellyfish is determined using features such …

Salinity And Temperature Distribution Of Jellyfish In The San Francisco Estuary, Trisha Huynh, Brooke Bemowski, Lindsay Sullivan, Wim Kimmerer

STAR Program Research Presentations

Jellyfish are generally characterized by their jelly-like bodies and internal lining (two tissue layers). They found both in the phylum Ctenophora and the phylum Cnidaria. Ctenophores differ from cnidarians primarily due to the rows of “combs”, or cilia, which are used for transportation. Additionally, ctenophores possess sticky cells while cindarians possess stinging cells. Jellyfish depend on zooplankton (small floating aquatic animals) as a food source; as a result, they are potential competitors and predators to plankton-eating fish and may negatively impact fish populations.

As recently as 1950, jellyfish have entered the San Francisco Bay from the Mediterranean Sea (probably …