Life Sciences Commons^™

Method Development For Structural Assessment Of Nanolipoprotein Particles With And Without Cross-Linked Lipids, Emma J. Mullen, Wei He, Sean Gilmore, Matthias Frank, Matthew Coleman, Megan Shelby

STAR Program Research Presentations

Membrane proteins make up approximately 30% of the cellular proteome and account for over 60% of pharmaceutical targets.1 Determining the structures of this class of proteins is critical to our understanding of disease states and will advance rational drug design. But membrane proteins have limited solubility, rarely form large crystals that diffract well, and often misfold outside of a bilayer, hindering crystallographic studies.1 Nanolipoprotein particles (NLPs) have arisen as a platform to readily solubilize membrane proteins while mimicking a native lipid environment. NLPs consist of a discoidal phospholipid bilayer encircled by an apolipoprotein belt. In an effort to optimize and …

Dataset For Pilot Randomized Trial To Reduce Urinary Bisphenols In Women With Obesity, Todd Hagobian, Zoe Delli-Bovi, Adrian Mercado, Alyssa Bird, Megan Guy, Suzanne Phelan

Kinesiology and Public Health

Background: Bisphenol exposure is widespread and correlated with diabetes and cardiovascular disease. Previous intervention studies have effectively lowered bisphenol exposure among women of normal-weight. The purpose of this pilot study was to test the hypothesis that a 3-week bisphenol intervention would decrease urinary bisphenol A (BPA) bisphenol S (BPS), and bisphenol F (BPF) in women with obesity.

Methods: Thirty women with obesity (31.1 ± 5.6 kg/m², 21.1 ± 3.1 yrs) were randomly assigned to an intervention or control. The intervention included weekly face-to-face meetings to reduce bisphenol exposures from food, cosmetics, and packaged products. Fasting urinary …

Long-Term Phytoremediating Abilities Of Dalbergia Sissoo Roxb. (Fabaceae), Saqib Ul Kalam, Fauzia Naushin, Fareed Ahmad Khan, Nishanta Rajakaruna

Biological Sciences

The boom of tanneries in north India has converted the river Ganga into a waste dumping stream. The tanneries discharge their heavy metal-rich effluents into the river. Tissues of two-year-old tree saplings of Dalbergia sissoo, soil sediments and river water samples were collected from three sites along the river Ganga at Jajmau, Kanpur. Site-1 was located 1 km upstream from the point of discharge of the effluents of the tanneries, Site-2 was close to the source point, and Site-3 was about 1 km downstream from the source point. Accumulation of Cu, Cr and Ni in leaves, bark, wood growth rings, …

Predictors Of Resilience Among Infants At Risk For Rapid Weight Gain, Alison K. Ventura, Kristen Thompson

Kinesiology and Public Health

Objective: The study objective was to investigate factors associated with resilience to rapid weight gain (RWG) among predominantly bottle-fed infants.

Methods: Data came from 1,353 mothers who participated in the Infant Feeding Practices Study 2. Mothers completed a prenatal questionnaire and monthly surveys of infant feeding and growth between birth and 12 months. Infants were classified as resilient if they were predominantly bottle fed but did not exhibit RWG between birth and the latter half of infancy (≥ +0.67 change in weight-for-age z score).

Results: Thirty-five percent of the sample (n = 467) was predominantly bottle fed but did …

California Livestock Owners: An Assessment Of Familiarity With New Antimicrobial Rules And Access To Educational Outreach, Philip Theodor Paulson

Master's Theses

The purpose of this research is to support the California Department of Food & Agriculture (CDFA) with education and outreach about recent changes regarding antimicrobial use in livestock, and to enhance their emergency communications network. This was done by characterizing a population of small-scale livestock owners underserved with regards to educational outreach about animal health issues, such as antimicrobial use rules. The project also seeks to enhance public understanding of the importance of responsible antimicrobial use in animal and human health.

To accomplish this, the study used a survey administered in person at local farm supply stores and online to …

Entrepreneur`S Guide To Starting A Rabbit Agricultural Enterprise, Mary Maldonado

Agricultural Education and Communication

At San Luis Obispo, the University Cal Ploy has an Animal Science Department that offers over twenty enterprises pertaining to livestock production which “provide the environment for students to get outside the classroom and work with the animals in teams of students” (Cal Poly 2017-19). As reported from the “Animal Science Department Enterprise Class List”, the classes involved help develop technical skills by having students learn and work in active production settings with livestock such as cows, steers, pigs, lambs, goats, and chickens (Animal Science Department 2017-19). However, when compared to the livestock accounted for at a traditional county fair …

Agricultural Sciences Outreach Program, Maghan Lea England, Sophie Lorraine Johnston

Agricultural Education and Communication

The College of Agriculture, Food, and Environmental Sciences (CAFES) mission statement and vision of the Agricultural Education and Communication Department is to develop future leaders, educators, and communicators to advance and advocate for the agricultural industry in a global economy (AGED, 2018). Student organizations, such as Agriculture Ambassadors and Agriculture Leadership Society, facilitate several outreach events to engage and excite prospective students in pursuing their higher education goals in agriculture at Cal Poly (CAFES Ag Council, 2018). In order to maintain growing student numbers, the Agricultural Education and Communication Department, specifically, the Agricultural Science major needs revamped recruiting efforts and …

The Thermal Ecology Of Sceloporus Occidentalis, Luis Patricio Burgos

Master's Theses

With temperatures rising globally, assessing the possible impacts of the changing climate becomes more and more urgent. Ectotherms are excellent indicators of potential climatic ramifications on biodiversity because of their heavy reliance on the environment for their thermoregulation. Studies have historically looked at thermal tolerance values to establish predictive models for population and species extinctions.

In chapter 1, we looked at recent studies that suggest that thermal tolerance may be a plastic trait and test the effects empirically. Most studies are based on captive lizards acclimated to laboratory conditions that do not necessarily reflect natural environments, and if thermal tolerance …

Engineering Yeast To Evaluate Human Proteins Involved In Selective Rna Packaging During Hiv Particle Production, Ryan M. Bitter

Master's Theses

Despite recent advances in antiretroviral therapy, nearly 37 million people continue to live with human immunodeficiency virus (HIV). Basic and applied research on the assembly of HIV could be enhanced by using a genetically tractable organism, such as yeast, rather than mammalian cells. While previous studies showed that expression of the HIV Gag polyprotein in Saccharomyces cerevisiae spheroplasts resulted in the production of virus-like particles (VLPs), many questions regarding the utility of yeast in HIV assembly remain uninvestigated. Here, we report use of S. cerevisiae for both the production of VLPs with selectively packaged RNA and to evaluate the human …

Presence Of Antibiotic Resistant Salmonella Spp. In Backyard Poultry And Their Environment, Nicole Land

Master's Theses

As keeping backyard poultry rises, human contact with zoonotic pathogens will increase. One such pathogen that backyard enthusiasts have exposure risks to is Salmonella spp. which may cause a potential public health threat due to its increasing multidrug resistancy. Salmonella spp. were present in 33 of 50 samples collected from 29 sites with backyard poultry coops in San Luis Obispo County during March to May in 2014. Two different Hardy-CHROME™ Salmonella Selective Media plates were used to culture and isolate positive samples of Salmonella spp.. Each positive isolate was tested for antimicrobial sensitivity to 6 standard antibiotics: Ampicillin, Bacitracin, …

Cold Acclimation Response Of Non-Native Italian Wall Lizard (Podarcis Siculus) Populations From New York And California, Daniel Haro

Master's Theses

Understanding how organisms respond to climatic variability and novel conditions is becoming an increasingly important task for ecologists. For ectotherms in the northern hemisphere, the response to cold is of special interest, considering that poleward range expansion events and increasing variability of temperatures during winter are already being observed as consequences of a warming planet. Though direction of change in physiological variables in response to cold is well studied in ectotherms, the extent to which traits can change and the rate at which they can change is not.

We compared the extent and rate of change in cold tolerance (CT …

Molecular Dynamics Of P21 And Fluorescent Sphingomyelin In Keratinocytes Exposed To Uvb, Tyler Malcolm Fraser

Master's Theses

Non-melanoma skin cancer (NMSC) is the most common malignant tumor, representing more than a third of all malignant tumors combined and the incidence is increasing every year. Ultraviolet (UV) radiation from the sun is the most dominant factor contributing to tumor initiation and progression. The condition is most prevalent in populations with lighter skin and older age. Current pharmaceutical molecular research targets the inhibition of the Epidermal Growth Factor Receptor (EGFR), a receptor which is commonly over-expressed or dysregulated in skin malignancies. This study evaluates the content and location of the damage marker p21 within keratinocytes that were incubated in …

Indirect Food Web Interactions: Sea Otter Predation Linked To Invasion Success In A Marine Fouling Community, Maggie F. Jenkins

Master's Theses

Humans have caused grave ecological and economic damage worldwide through the introduction of invasive species. Understanding the factors that influence community susceptibility to invasion are important for controlling further spread of invasive species. Predators have been found to provide biotic resistance to invasion in both terrestrial and marine systems. However, predators can also have the opposite effect, and facilitate invasion. Therefore, recovery or expansion of native predators could facilitate the spread of invasive species. Needles et al. (2015) demonstrated that the threatened southern sea otter (Enhydra lutris nereis) facilitated the invasion of an exotic bryozoan, Watersipora subatra. …

Climactic Niche Model For Overwintering Monarch Butterflies In A Topographically Complex Region Of California, Ashley Fisher, Kiana Saniee, Charis Van Der Heide, Jessica Griffiths, Daniel Meade, Francis X. Villablanca

Biological Sciences

We use climatic conditions that are associated with known monarch butterfly overwintering groves in California to build a Maxent model, and focus on the fine scale probability of overwintering grove occurrence in a topographically complex region of the state (Santa Barbara County). Grove locations are known from recent and historical surveys and a long-term citizen science database. The climatic niche model performs well, predicting that overwintering habitat is most likely to occur along the coast and at low elevations, as shown by empirical data. We then use climatic variables in conjunction with climate change scenarios to model the future location …

Physiological Response Of The Giant Acorn Barnacle, Balanus Nubilus, To Air Exposure, Emily Jane Resner

Master's Theses

The giant acorn barnacle, Balanus nubilus, is a resident of the subtidal and low intertidal rocky shoreline on the Pacific Coast of North America (Alaska to Baja California). B. nubilusis notable for having the largest muscle fibers in the animal kingdom; fiber diameters that can exceed 3mm in adults! At such extreme sizes these muscle cells may be at risk for insufficient oxygen delivery to mitochondria owing to low SA:V ratios and long intracellular diffusion distances. Oxygen limitation to these muscles may be further exacerbated during low tide air exposure (emersion) or environmental hypoxia events, which are increasing …

Intracanopy Adjustment Of Leaf-Level Thermal Tolerance Is Associated With Microclimatic Variation Across The Canopy Of A Desert Tree (Acacia Papyrocarpa), Ellen M. Curtis, Charles A. Knight, Andrea Leigh

Biological Sciences

Tree crowns are spatially heterogeneous, sometimes resulting in significant variation in microclimate across the canopy, particularly with respect to temperature. Yet it is not known whether such localised temperature variation equates to intracanopy variation in leaf-level physiological thermal tolerance. Here, we studied whether microclimate variation across the canopy of a dominant desert tree equated to localised variation in leaf thermal thresholds (T₅₀) among four canopy positions: upper south, upper north, lower south, lower north. Principal component analysis was used to generate a composite climatic stress variable (C_STRESS) from canopy temperature, vapour pressure deficit, and …

Effects Of Opaque, Weighted Bottles On Maternal Sensitivity And Infant Intake, Alison K. Ventura, Alexandra Hernandez

Kinesiology and Public Health

Caregivers' abilities to assess how much is in the bottle may lead to encouragement of infant bottle emptying and overfeeding. The present study assessed whether use of opaque, weighted bottles (as compared with conventional, clear bottles) improves feeding outcomes. Mothers with infants <32 weeks of age (n = 76) were assessed on two separate days. Mothers fed their infants from an opaque, weighted bottle on 1 day and a clear bottle on the other; conditions were counterbalanced. Blinded raters certified in the Nursing Child Assessment Feeding Scale scored all videos to determine maternal sensitivity. Infant intake was assessed by weighing the bottle before and …

Adapting Cell-Free Protein Synthesis As A Platform Technology For Education, Grace W. Chu, Max Z. Levine, Nicole E. Gregorio, Javin P. Oza

STAR Program Research Presentations

Cell-free protein synthesis (CFPS) has emerged as an enabling biotechnology for research and biomanufacturing as it allows for the production of protein without the need for a living cell. Applications of CFPS include the construction of libraries for functional genomics and structural biology, the production of personalized medicine, and the expression of virus-like particles. The absence of a cell wall provides an open platform for direct manipulation of the reaction conditions and biological machinery. This project focuses on adapting the CFPS biotechnology to the classroom, making a hands-on bioengineering approach to learning protein synthesis accessible to students grades K-16 through …

The Cal Poly Basic Needs Task Force Report - Fall 2018, Aydin Nazmi

Food Science and Nutrition

No abstract provided.

Effect Of Spirotetramat Concentration On Anagyrus Pseudococci Mortality, Jacob Tice Nivison

Wine and Viticulture

Control of vine mealybug in vineyard systems is of critical importance due to economic injury potential including an ability to vector virus. Traditional management of this pest has relied heavily upon the use of systemic and contact insecticides. The systemic insecticide MoventoÒ, registered for vine mealybug and active ingredient spirotetramat, has been shown to be compatible with biological control. However potential side effects of chemical controls on beneficial insect populations is known to affect non target arthropods. This study examined the effect of the systemic insecticide spirotetramat on populations of adult parasitic wasps, Anagyrus psuedococci, at two concentrations with wasps …

Effect Of Evapotranspiration Rate On Almond Yield In California, Dafne Isaac Serrano

Master's Theses

Since 2011, California has been under drought conditions. These conditions have not only affected water availability for farmers, but also production. California’s second most valuable crop, almonds, has been affected by drought conditions. This study used three models (Model 1-3) to describe almond yield variability from year to year and almond yield variability within a year in Kern County, CA. The study evaluated 185 almond farms that were classified in three locations (east side, west side and north west side). The years of the study were 2011 (wet year) and 2013-2015 (drought condition years). Model 1 determined a functional regression …

Parental Perspective And Feeding Practices Effects On Food Neophobia In Elementary-Age School Children, Farnoosh Ayoughi

Master's Theses

The Food neophobia (FN) behaviors in children are developed during childhood and can be influenced by parental FN and feeding behaviors. The objective of this study was to evaluate the relationship between FN and fruit and vegetable neophobia (FVN) among parents, the parents-reports on child's behavior and child self-reports. The effect of parental feeding practices and demographic variables on children’s FN and FVN were evaluated. Sixty-eight parents paired with their elementary school children (aged 7-12 years) in San Luis Coastal Unified School District participated in this study. Results indicated that parents reported their children more neophobic than children self-reported neophobia; …

‘Ripple’ Effect On Infant Zbmi Trajectory Of An Internet-Based Weight Loss Program For Low-Income Postpartum Women, S. Phelan, T. A. Hagobian, A. Ventura, A. Brannen, K. Erickson-Hatley, A. Schaffner, K. Muñoz-Christian, S. Mercado, D. F. Tate

Kinesiology and Public Health

Background: Weight loss interventions can have positive ‘ripple’ effects on untreated partners in the home, but ripple effects on infants are unknown.

Objective: To examine whether a 12-month internet-based weight loss intervention for postpartum mothers had a positive ripple effect on participants’ infants.

Methods: A 12-month cluster randomized, assessor-blind, clinical trial enrolling 371 postpartum women at 12 Women, Infants, Children clinics in CA. Clinics were randomized to standardWomen, Infants, Children or an internet-based weight loss intervention for mothers.

Results: A total of 333 of the 371 (89.8%) mothers assented for infant participation. Infants were 5.3 ± 3.2 months; 75.9% were …

Comparison Of An Endangered Species’ Seed Bank Before And After Ungulate Removal, Melanie K. Phillips, Kathryn Mceachern

STAR Program Research Presentations

The purpose of this study was to assess the impact of the removal of ungulates on the soil seed bank of the endemic Santa Rosa Island manzanita (Arctostaphylos confertiflora). A. confertiflora was trampled and browsed by non-native ungulates between the years 1850 and 2011 which reduced its ability to produce seeds.This species is an obligate seeder, meaning that sprouting from seeds in the soil is its only method of reproduction. Due in part to the lack of its soil seed bank, this species was federally listed as endangered by the US Fish and Wildlife Service in 1997. In order to …

Effect Of Storage Period And Treatment On The Composition And Digestibility Of Olive Pomace In Cattle, Alexis Cecilia Ulloa

Master's Theses

Utilizing local by-products can serve to significantly reduce the current feed costs for ruminant producers. The objective of this study is (1) to evaluate the effects of chemical and bacterial inoculants in combination with ensiling, on the nutritional value and ensiling compatibility of olive pomace (OP) and (2) to identify the most biologically favorable treatment and ensiling day of OP for feeding to cattle. Freshly centrifuged OP (Olivas de Oro Olive Company, Creston, CA) was treated with one of four treatments: (1) no additives (control; CONT); (2) urea applied at 5% of DM (UREA; Agrium U.S. Inc, Loveland, CO); (3) …

An Assessment Of The Greatest Impacts On Distribution Uniformity For Drip And Micro Irrigation, Brooke Ashley Worden

Master's Theses

Using the Cal Poly Irrigation Training and Research Centers (ITRC) drip/micro evaluation program, global, or system, DU_lq is computed by combining the component DU_lq values of: pressure variation, uneven spacing between emitters, unequal drainage and “other” causes. “Other” causes include plugging, wear and manufacturing coefficient. The program also computes what percentage of the non-uniformity is due to each component. Burt (2004) showed that over 95% of the non-uniformity is due to “Other” causes and pressure differences. This thesis looks at what specifically in those components is driving the non-uniformity by analyzing various equipment and field practices and their …

Comparative Analysis Of Body Composition And Reference Values Of Visceral Adipose Tissues In Various American Collegiate Sports, Eshan M. Dandekar

Master's Theses

Background: Currently, body composition (BC) assessment is usually performed to diagnose disease states and accurately estimate certain types of tissues. In athletes, performing BC assessments helps gauge training and nutrition programs to see if they are adequately meeting the athlete’s needs to improve performance. Annual Dual Energy X-ray Absorptiometry (DXA) scans before the start of an athlete’s season can help identify an athlete’s preparedness or health before training begins.

Objective: To assess the preseason BC of four collegiate sports: Men’s basketball, men’s baseball, women’s volleyball, and women’s soccer, for Fat Mass (FM), bone mineral density BMD), Fat-Free Mass …

Microfluidic Electrical Impedance Spectroscopy, John J. Foley

Master's Theses

The goal of this study is to design and manufacture a microfluidic device capable of measuring changes in impedance valuesof microfluidic cell cultures. Tocharacterize this, an interdigitated array of electrodes was patterned over glass, where it was then bonded to a series of fluidic networks created in PDMS via soft lithography. The device measured ethanol impedance initially to show that values remain consistent over time. Impedance values of water and 1% wt. saltwater were compared to show that the device is able to detect changes in impedance, with up to a 60% reduction in electrical impedance in saltwater. Cells were …

Scale-Invariant Geometric Data Analysis (Sigda), Marina Girgis, Max Robinson

STAR Program Research Presentations

The purpose of this research is to introduce a new data analysis method called Scale Invariant Geometric Data Analysis (SIGDA). SIGDA has been shown to be more informative than more common data analysis methods, such as Principal Component Analysis (PCA). SIGDA is used to visualize complex data sets in a way that accurately preserves data patterns and behavior. SIGDA is designed to preserve relative ratios in a numerical matrix, and the number of entries has to be more than the total number of rows and columns. Our research involved providing a simple explanation of SIGDA's mathematical process—simple enough for the …

Impacts Of Nutrient Enrichment On Native And Non-Native Plants In Serpentine Soil, Amber R. Williams, Mary Devlin, N. Rajakaruna

STAR Program Research Presentations

Serpentine soil, derived from serpentinite, California’s state rock, is characterized by its harsh nature - due to its low levels of essential nutrients and exceptionally high levels of toxic heavy metals.In California, serpentine soils are characterized by high levels of plant endemism and rarity. Plants occurring in serpentine soil exhibit extreme tolerance of harsh soil conditions, and are typically out-competed in ‘normal’ soils due to the cost associated with physiological specialization. Atmospheric nutrient deposition is contributing to a greater invasion of non-native grass species on serpentine soils, outcompeting the native species and threatening them with local extinction. Our greenhouse study …