Life Sciences Commons^™

Potentially Adaptive Significance Of Genome Size Diversity Across Ecological Gradients And Seed Size In Ivesia (Rosaceae), Israel T. Borokini, Shaun R. Broderick, Zhi Gao, Joshua M. Hallas, James A. Birchler, Mary M. Peacock

Western North American Naturalist

Variation in genome size across taxa has been explained using neutral and nonadaptive theories; however, genome size variation among taxonomic groups can also be shaped by natural selection if it correlates with functional traits. This study investigated the potential adaptive significance of genome size in Ivesia, a radiating genus distributed in the western North American desert ecosystems. We estimated the genome size of 34 taxa (including 31 Ivesia taxa, 2 Potentilla taxa, and 1 Horkelia taxon) using flow cytometric methods. For each taxon, leaf samples were collected from 6 individuals in 1 location each; intraspecific genome size variation was …

The Effects Of A High-Carbohydrate Versus A High-Fat Shake On Biomarkers Of Metabolism And Glycemic Control When Used To Interrupt A 38-Hour Fast: A Randomized Crossover Study, Landon S. Deru

Theses and Dissertations

Purpose: The primary aim of this study was to determine the impact of various fast-interrupting shakes on markers of glycemic control including glucose, β-hydroxybutyrate (BHB), insulin, glucagon, GLP-1, and GIP. Methods: Twenty-seven adults (12 female, 15 male) completed all three conditions of this study. One condition consisted of a 38-hour water-only fast, and the other two conditions were similar but the fasts were interrupted at 24 hours by either a high carbohydrate/low fat (HC/LF) or a low carbohydrate/high fat (LC/HF) shake. Results: The water only fast resulted in 135.3% more BHB compared to the HC/LF condition (t = 7.77, p < 0.0001) and 69.6% more compared to the LC/HF condition (t = 5.12, p < 0.0001). Conversely, the LC/HF condition exhibited a 38.8% higher BHB level than the HC/LF condition (t = 2.70, p = 0.0086). Additionally, the area under the curve (AUC) for glucose was 14.2% higher in the HC/LF condition than in the water condition (t = 6.23, p < 0.0001) and 6.9% higher compared to the LC/HF condition (t = 3.14, p = 0.0024), with the LC/HF condition yielding 7.8% more glucose than the water condition (t = 3.21, p = 0.0020). At the 25-hour mark, insulin and glucose-dependent insulinotropic polypeptide (GIP) were significantly elevated in the HC/LF condition compared to the LC/HF condition (F = 3.84, p = 0.0002 and F = 2.27, p = 0.0244, respectively) and compared to the water condition (F = 7.00, p < 0.0001 and F = 9.96, p < 0.0001, respectively). Furthermore, insulin, glucagon-like peptide-1 (GLP-1), and GIP were increased in the LC/HF condition compared to the water condition at 25 hours (F = 3.19, p = 0.0016, F = 2.43, p = 0.0158, and F = 12.13, p < 0.0001, respectively). Notably, glucagon concentrations at the 25-hour mark decreased in the HC/LF group compared to the LC/HF condition (F = 3.37, p = 0.0009). However, by the 38-hour time point, no statistically significant differences were observed among the conditions for any of the analyzed hormones. Conclusions: While a LC/HF shake does not mimic a fast completely, it does preserve some of the metabolic changes including elevated BHB and glucagon, and decreased glucose and insulin compared to a HC/LF shake.

Larson2023_Slow Release Of Ga3_Data, Alexandra J.S. Larson, Maureen Cartwright, Whitney D. Jones, Katrina Luce, Mei Chen, Kate Petersen, Shannon V. Nelson, David J. Michaelis, Matthew D. Madsen

ScholarsArchive Data

This file contains the data description for the Larson2023_Slow-release of GA3 Hormone… Supplementary File.

The excel file contains four worksheets: 1) Palmer’s germination, 2) Palmer’s biomass, 3) germination other species, 4) biomass other species. Blank cells indicate either no coating was used or there was no plant.

1) “Palmer’s germination” and “germination other species” A) Temp (o C): germination chamber temperature setting B) Species: common name of penstemon species tested (“germination other species” only) C) Treatment: seed coating treatment D) Final Germination percentage: percent of seed that germinated. E) FGP: final germination percent in decimal form F) Time to 50% …

Integrating Clinical Cancer And Ptm Proteomics Data Identifies A Mechanism Of Ack1 Kinase Activation, Eranga R. Balasooriya, Deshan Madhusanka, Tania P. López-Palacios, Riley J. Eastmond, Dasun Jayatunge, Jake J. Owen, Jack S. Gashler, Christina M. Egbert, Chanaka Bulathsinghalage, Lu Liu, Stephen R. Piccolo, Joshua L. Andersen

Faculty Publications

Beyond the most common oncogenes activated by mutation (mut-drivers), there likely exists a variety of low-frequency mut-drivers, each of which is a possible frontier for targeted therapy. To identify new and understudied mut-drivers, we developed a machine learning (ML) model that integrates curated clinical cancer data and posttranslational modification (PTM) proteomics databases. We applied the approach to 62,746 patient cancers spanning 84 cancer types and predicted 3,964 oncogenic mutations across 1,148 genes, many of which disrupt PTMs of known and unknown function. The list of putative mut-drivers includes established drivers and others with poorly understood roles in cancer. This ML …

Effects Of Fire On Kangaroo Rats In The San Joaquin Desert Of California, David J. Germano, Lawrence R. Saslaw, Brian L. Cypher, Linda Spiegel

Western North American Naturalist

Fire can alter ecological communities, particularly those that are not fire-adapted, such as desert communities. We examined the effects of fire on rodent communities in the San Joaquin Desert of central California. Of particular interest were the effects on kangaroo rats (Dipodomys spp.) including 2 rare species, the giant kangaroo rat (D. ingens) and the short-nosed kangaroo rat (D. nitratoides brevinasus). Lightning caused multiple fires in arid scrub habitat in western Kern County in 1993. We trapped rodents at 7 sites along paired transects, with one transect in a burned area and one in a …

Floral Constancies Of Flies And Native Bees Visiting Ceanothus Perplexans (Rhamnaceae) Flowers In Western Arizona, William D. Wiesenborn

Western North American Naturalist

Ceanothus perplexans (Rhamnaceae) is a chaparral and montane shrub found mostly in southern California and northern Baja California, Mexico, and infrequently in western Arizona. The plant produces inflorescences of small, perfect, white or cream flowers during winter to early spring. I examined the pollination of C. perplexans in the Cerbat Mountains in western Arizona during March and April 2022 by collecting flies and native bees on flowers and estimating floral constancies from the proportions of conspecific pollen in pollen loads. Flowers are protandrous with the pistil elongating and the stigmas separating after the anthers lose pollen. Pollen from C. perplexans …

Evaluating A Large Language Model’S Ability To Solve Programming Exercises From An Introductory Bioinformatics Course, Stephen R. Piccolo, Paul Denny, Andrew Luxton-Reilly, Samuel H. Payne, Perry G. Ridge

Faculty Publications

Life scientists frequently write computer code when doing research. Computer programming can aid researchers in performing tasks that are not supported by existing tools. Programming can also help researchers to implement analytical logic in a way that documents their steps and thus enables others to repeat those steps. Many educational resources are available to teach computer programming, but this skill remains challenging for many researchers and students to master. Artificial-intelligence tools like OpenAI’s ChatGPT are able to interpret human-language requests to generate code. Accordingly, we evaluated the extent to which this technology might be used to perform programming tasks described …

Combining Expert Opinions To Assess Risk Of Change In Earth Systems: Permafrost Collapse, Global Wildfire, And Water Security, Sayedeh Sara Sayedi

Theses and Dissertations

In a world of uncertainty and change, leaders should base their decisions on best available scientific evidence. However, history has shown that science is often inadequately incorporated into the decision-making process. This dissertation investigates three environmental issues to identify the challenges of considering Earth system dynamics in policymaking and management. I also propose solutions for improving the two-way exchange of knowledge and values between researchers and policymakers. In chapter one, I investigate subsea permafrost carbon sensitivity to climate change using an expert assessment. The analysis revealed that subsea permafrost contains significant carbon stocks and is already contributing to climate change …

Helping Families Adapt To Individual Circumstances: The Case Of Stay-At-Home Fathers, Kade Cope

Family Perspectives

No abstract provided.

The Interactive Role Of Shared Reading And Child Participation In Cognitive Development, Joanne Anderson

Family Perspectives

No abstract provided.

What We Say Matters! How Parents Affect Their Child's Emotional Knowledge, Savanna Nielson

Family Perspectives

No abstract provided.

The Importance Of Teaching Kids How To Be Hopeful, Cambria Siddoway

Family Perspectives

No abstract provided.

Starved For Conversation: The Lost Art Of Human Connection, Emily Scott

Family Perspectives

No abstract provided.

Don't Forget About Their Siblings: Mental Health In Siblings Of Autism, Kylie W. Martin

Family Perspectives

No abstract provided.

Childhood Screen Time And Child Development, Angela Webb

Family Perspectives

No abstract provided.

Oxytocin And Attachment Development, Sage Delamare

Family Perspectives

No abstract provided.

Raising Praise: A Parent's Role In Influencing Adolescent Self-Esteem Through Different Forms Of Praise, Karlee Mcrae

Family Perspectives

No abstract provided.

How To Better Support Your Loved Ones With Ocd, Sarah Jacobs

Family Perspectives

No abstract provided.

Marital Satisfaction Among Interracial And Intercultural Couples, Brynly Rich

Family Perspectives

No abstract provided.

For The Strength Of Parents, Macall Smith

Family Perspectives

No abstract provided.

Adhd In Women: Psychological, Academic, And Social Effects, Sienna Kelson

Family Perspectives

Attention-deficit/hyperactivity disorder (ADHD) is a neurological disorder that involves a persistent pattern of inattention and/or hyperactivity-impulsivity which interferes with functioning or development. ADHD is commonly diagnosed in childhood and can persist into adulthood (Kok et al., 2020; Fraticelli et al., 2022). It is estimated that ADHD affects 5-7% of school-age children with a male-to-female ratio of approximately 3:1 (Kok et al., 2016). For a long time, ADHD was assumed to be primarily a male disorder, but researchers are increasingly finding that the number of males and females with ADHD is likely close to equal (Nussbaum, 2012). There is increasing evidence …

Reproductively Viable Population Of American Black Bears (Ursus Americanus) In Lowland Chihuahuan Desert Habitat Of Trans-Pecos Texas, Franklin D. Yancey Ii, Stephen Kasper

Western North American Naturalist

During a 6.5-year camera-trap study in Big Bend Ranch State Park (situated in the Trans-Pecos region of West Texas), we documented a persistent breeding population of American black bears (Ursus americanus) in the Solitario region of the park. The habitat in the Solitario, which is an isolated, eroded remnant of volcanic activity, is low-elevation Chihuahuan Desert scrub but includes significant and complex localized topography and prolonged water sources in the form of tinajas. From January 2016 to May 2022, camera traps captured 367,301 photographs. Of these, 868 contained one or more black bears, resulting in 1010 black bear …

Utilizing Low-Cost Sensors To Monitor Indoor Air Quality In Mongolian Gers, Callum Flowerday, Jaron C. Hansen, Phil Lundrigan, Christopher Kitras

Faculty Publications

Air quality has important climate and health effects. There is a need, therefore, to monitor air quality both indoors and outdoors. Methods of measuring air quality should be cost-effective if they are to be used widely, and one such method is low-cost sensors (LCS). This study reports on the use of LCSs in Ulaanbataar, Mongolia to measure PM_2.5 concentrations inside yurts or “gers”. Some of these gers were part of a non-government agency (NGO) initiative to improve insulating properties of these housing structures. The goal of the NGO was to decrease particulate emissions inside the gers; a secondary result …

First Documentation Of Least Chub In The Snake River Drainage In Idaho, Eric J. Billman, Dallin Stokes, Isaac Calderwood, Cody Diehl

Western North American Naturalist

The Least Chub (Iotichthys phlegethontis) is a small minnow endemic to the Bonneville Basin in Utah, where the current distribution of extant populations is limited to a few small spring complexes. We report on the first documentation of Least Chub in the upper Snake River drainage in Idaho. In June 2021, October 2021, and June 2022, we surveyed for small-bodied fishes in off-channel habitat of lower Henrys Fork in Cartier Slough Wildlife Management Area west of Rexburg, Idaho. Small-bodied fishes were sampled at 17 sites in off-channel habitat; 5 baited minnow traps (galvanized steel) were set for approximately …

Broadband Cavity-Enhanced Absorption Spectroscopy (Bbceas) Coupled With An Interferometer For On-Band And Off-Band Detection Of Glyoxal, Callum Flowerday, Jaron Hansen, Ryan Thalman

ScholarsArchive Data

These data are the raw data from the BBCEAS. The "data_" files are the PMT data and the "DualDetection_08_02_2023" files are the spectrograph data. The PMT data are found in column 7 of the sheet. Column 1 is the time stamp.

Gibberellic Acid Data, Amber Johnson

ScholarsArchive Data

This dataset contains plant emergence and survival data collected from a field study which focused on overcoming seed dormancy. Seed dormancy can present a challenge within a restoration scenario where rapid establishment is required. Soaking seeds in gibberellic acid (GA₃) can overcome dormancy and increase germination but this treatment may not be effective outside the laboratory. An easier and potentially more effective method to apply this hormone is to coat seeds with a GA₃-impregnated polymer, which provides a slow release of GA₃. Seed dormancy can also be mitigated by creating a favorable microsite with …

Gene Dive: Assessing The Diversity Of Perchlorate Reducing Genes In Mars Analog Environments, Colin Michael Robinson

Theses and Dissertations

Biotic perchlorate reduction, a metabolic process that potentially occurs on Mars, has long been the subject of speculation in astrobiology. To determine whether it could be a viable metabolic strategy on the Red Planet, we sought to determine whether biotic perchlorate reduction could evolve and persist in Mars-analog environments on Earth. In this study, we introduce Gene Dive, a novel computational methodology that leverages profile hidden Markov models, sequence alignment, phylogenetic tree construction, and Faith's phylogenetic diversity to probe the prevalence and diversity of perchlorate reducing genes in metagenomes. To determine whether biotic perchlorate reduction persists in a wide range …

"The Trees Act Not As Individuals"--Learning To See The Whole Picture In Biology Education And Remote Sensing Research, Rebeka A.F. Greenall

Theses and Dissertations

To increase equity and inclusion for underserved and excluded Indigenous students, we must make efforts to mitigate the unique barriers they face. As their knowledge systems have been historically excluded and erased in Western science, we begin by reviewing the literature on the inclusion of Traditional Ecological Knowledge (TEK) in biology education and describe best practices. Next, to better understand how Native Hawaiian and other Pacific Islander (NHPI) students integrate into the scientific community, we used Social Influence Theory as a framework to measure NHPI student science identity, self-efficacy, alignment with science values, and belonging. We also investigated how students …

Food Web Of Icy Strait, Alaska: Comparison Of Position, Size, And Overlap Of Trophic Niche Among Fish Species, Andrew D. Suchomel

Theses and Dissertations

The Icy Strait of southeast Alaska, USA is an ideal system to study how ecological diversity is maintained. This area has historical ecological significance and supports diverse assemblages of fish species that are easily sampled. We used stable isotope analysis using δ13C and δ15N stable isotope ratios. Using these isotope ratios, we quantified trophic niche position, size, and overlap and compared how those trophic niche metrics varied using ecological and evolutionary perspectives. For ecological variation, mean total length, and δ13C trophic niche position has positive relationships with trophic niche size while total percent trophic niche overlap had a strong negative …

Soil Seed Bank Composition And Spatial Distribution In A Cheatgrass (Bromus Tectorum L.)–Dominated Rangeland In Colorado, Usa, Ryan W. R. Schroeder, Jayne L. Jonas, M. Nikki Grant-Hoffman, Mark W. Paschke

Western North American Naturalist

Invasion by nonnative annual plants that form prolific seed banks, including Bromus tectorum L. (cheatgrass), throughout western North America is a major natural resource concern. Even with known economic and ecological implications, soil seed banks and their potential to impact ecological restoration in arid and semiarid ecosystems are poorly understood. Quantifying the regenerative potential of the soil seed bank—the living seeds in the soil profile and on the soil surface—can help natural resource managers make decisions to increase the likelihood of restoration success. We analyzed the germinable soil seed bank composition and distribution of a rangeland site in western Colorado …