Life Sciences Commons^™

Sagefire: An Agent-Based Model Of Heat Dynamics In Sagebrush Steppe Ecosystems During A Fire Event, Samuel Joseph Knuth

Theses and Dissertations

Context: The Great Basin in the western US features arid to semi-arid climates and sagebrush steppe ecosystems. Increased fire frequency can negatively impact these ecosystems by promoting invasive species. Agent-based modeling is a valuable tool to study fire dynamics in sagebrush steppe ecosystems, offering insights in management strategies and ecosystem resilience. Objectives: We developed SageFire, an agent-based model, to simulate heat dynamics influenced by shrub cover during fires in the Great Basin. Our objectives were to accurately classify ground cover types, incorporate classified imagery into a simulation model, and accurately visualize fire intensity based on the spatial arrangement of the …

Spatial Distribution Of Soil Nutrients And Properties As A Function Of Vegetation Distribution, Fire, And Rodent Activity, Nathan O. Jones

Theses and Dissertations

Fires are becoming larger and more frequent in the deserts of North America, driven largely by the expansion of invasive annual grasses. Rodent consumers can curb invasive grass expansion through plant herbivory, but the top-down effects of this pressure on soil resources are understudied. In shrub dominated deserts, islands of fertility under shrub canopies are surrounded by nutrient poor interspace soils that dictate patterns of vegetative growth. Little is known of how top-down controls from rodents and fire may interact with fertile island topography. These studies explore the effects of fire, rodent activity, and fertile island topography on plant available …

E Afua Mai Mauga Manuia O Nu'u: Conservation From Mountains To Reefs In Tropical Pacific Islands, Tavailau T. Segi

Theses and Dissertations

Soil erosion is the main exacerbating threat to climate change impacts in tropical Pacific islands, particularly to steep and mountainous volcanic islands. The morphological features (steep and mountainous), short distance from ridge to reef, frequent storm events, extended raining season, and accelerating developments from growing populations pose serious threats to terrestrial and marine resources. Perhaps the most threatening part is the high dependency of their human populations on the land and ocean for food supplies, supporting national economies, and sustaining culture and human well-being. Locals, governments, and non-governmental organization projects are underway to improve protection and management of natural resources …

The Role Of Caloric Intake On Achilles Tendon Health In Pre-Professional Ballet Dancers, Annie G. Smedley

Theses and Dissertations

Background: Achilles tendinopathy is a common and debilitating condition among female ballet dancers due to the large repetitive loading forces placed on their Achilles tendons during rehearsals and performances. Tendon health problems in females are exacerbated by a lack of understanding about how energy availability influences tendons. Ballet dancers, as aesthetic athletes, are vulnerable to low energy availability and can enter a spectrum disorder, relative energy deficiency in sport, that consists of low energy availability (with or without disordered eating), menstrual cycle dysfunction, and low bone mineral density (BMD). Aims: 1) To investigate the relationship between insufficient caloric intake and …

Spatiotemporal Variation In Regeneration And Herbivory In Stable And Seral Aspen Stands, Sterling Burgess Kerr

Theses and Dissertations

Aspen forests are strongly influenced by disturbances like fire and ungulate herbivory, which can impact plant community composition and succession. Human activities alter these disturbances, affecting their timing, extent, and severity. Chapter 1 explores the effects of large-scale prescribed fire and mechanical thinning treatments on aspen regeneration and vulnerability to ungulate herbivory. Results show that while aspen regeneration was hindered by chronic ungulate herbivory in untreated areas, mechanical thinning and prescribed fire stimulated aspen regeneration. However, mechanically thinned plots were vulnerable to ungulate herbivory, with only prescribed fire having reduced browsing. Chapter 2 investigates herbivory patterns and recruitment across stable …

Association Between Handgrip Strength And Muscle Mass In Children 6 To 10 Years Old, Samantha Velázquez Villalobos

Theses and Dissertations

Measuring body composition in children is important due to the rise of childhood obesity and changes that occur during pre-pubertal years. Sarcopenia, defined as a muscle mass loss and function, is increasingly recognized in pediatric populations, particularly in childhood obesity. Therefore, it is necessary to have measurements which not only provide an overall picture of body composition, but that can distinguish between muscle and fat mass. Methods of body composition such as Dual Energy X-ray Absorptiometry (DEXA) provide accurate assessments of body composition, but they are resource-intensive and impractical for routine monitoring in clinical or community settings. To address this, …

Exploring Mesolimbic Circuitry Modulation By Opiates, Interleukin-10, And Psychostimulants, Joakim W. Ronström

Theses and Dissertations

The mesolimbic dopamine (DA) system originates in the ventral tegmental area (VTA) and projects to the nucleus accumbens (NAc) and other areas including the basolateral amygdala (BLA), prefrontal cortex, and the hippocampus. Drug use induces reward and leads to dysregulation in these brain areas and eventually to substance use disorders (SUDs). Chapter 1 introduces the mesolimbic DA system and its relationship to drug use and their relevance to each chapter. Chapter 2 explores opioid effects on BLA circuitry which is known to play a role in the emotional response including anxiety and stress in SUDs. We showed that morphine induced …

Characterization Of Cellular Metabolism Regulation By The Transcription Factor Centromere Binding Factor 1 (Cbf1), Spencer Ellsworth

Theses and Dissertations

Centromere binding factor 1 (Cbf1) is a transcription factor that controls the transcription of many genes involved in cellular respiration and lipid biogenesis and, as such, has been associated with hypolipidemia in humans. It is a known substrate for PAS kinase, which phosphorylates Cbf1 and alters its activity. Our hypothesis is that this phosphorylation affects the genes it regulates and the DNA motifs it binds to, perhaps due to different transcription complexes being formed. In this study, we conduct a chromatin immunoprecipitation in Saccharomyces cerevisiae to determine what genes and DNA motifs Cbf1 binds to in its wild type versus …

Evaluating The Effectiveness Of Dormant Season Grazing To Reduce Cheatgrass And Its Effect On Biodiversity, Curtis L. Drake

Theses and Dissertations

Invasion of cheatgrass (Bromus tectorum L.) into sagebrush steppe communities threatens the survival of these at-risk ecosystems. One tool available to combat cheatgrass invasion is dormant season grazing. This study investigates the effectiveness of dormant season cattle grazing to reduce cheatgrass abundance in two high-elevation sagebrush steppe communities in southeastern Idaho, as well as the impact of dormant season grazing on plant species biodiversity. Our experiment utilized a randomized complete block design with four grazing treatments – ungrazed, fall-grazed, spring-grazed, and a combination of spring- and fall-grazed. We used an ANOVA standard least squares procedure to determine differences in biodiversity …

Time Spent Jogging/Running And Biological Aging In 4,458 U.S. Adults: An Nhanes Investigation, Christina Michelle Blackmon

Theses and Dissertations

Telomere length is a good index of cellular aging. Longer telomeres are predictive of longer life, and healthy lifestyles are associated with longer telomeres. This study explored the relationship between time spent jogging or running each week and leukocyte telomere length (LTL) in 4,458 randomly selected U.S. adults. The association was studied using data collected by the National Health and Nutrition Examination Survey (NHANES), and a cross-sectional design. Total weekly jog/run time was calculated from survey responses. From the minute totals, three categories were formed: <10 minutes/week, 10-74 minutes/week, and ≥75 minutes/week. Adults in the third category met the U.S. guidelines. Data were analyzed using one-way ANOVA. Partial correlation was used to adjust for differences in potential mediating factors, including demographic and lifestyle/medical factors. In the total sample, after adjusting for all the potential covariates, mean LTL significantly differed across the 3 jog/run categories (F=4.1, P=0.0272). Specifically, adults who met the guidelines via jogging and/or running had significantly longer telomeres than adults who performed no jogging/running. Adults in the middle category did not differ from the other two categories. A minimum of 75 minutes of jogging/running weekly is predictive of longer telomeres when compared to adults who do not jog or run regularly.

Establishing A Normative Respiratory Baseline For Diaphragmatic Breathing In The Geriatric Population, Madison M. Jensen, Connor J. Wright, Ty K. Hacking, James D. Mead, Ulrike Mitchell, Lauren Adams

Library/Life Sciences Undergraduate Poster Competition 2024

Respiratory function can be assessed through lung volume measurements such as tidal volume and vital capacity. It can also be assessed by measuring diaphragm mobility and thickness. The diaphragm is a muscle that contributes up to 75% of normal lung ventilation. It averages 1-2 cm of excursion during quiet breathing; this increases significantly to about 7-11 cm during forced breathing. Aging has influences on respiratory function. Diaphragmatic muscle strength decreases, and lung function, capacity, and compliance also decline. There is a steadily growing elderly population in the US and globally. Due to an aging population and the significance respiratory function …

Drug Modification Of Synaptic Plasticity At The Inhibitory Synapses Involving Gaba Neurons In The Ventral Tegmental Area, Jie Wu

Theses and Dissertations

The neurobiological underpinnings of substance use disorders (SUDs) involve complex alterations in synaptic plasticity within the mesolimbic dopamine system, particularly within the ventral tegmental area (VTA). While dopamine neurons in the VTA are extensively studied in addiction research, less attention has been given to the plasticity exhibited by VTA GABAergic neurons, despite their established regulatory role in modulating dopamine cell activity. Building upon the ground-breaking work of Bocklisch et al. (2013), we investigated the plasticity at the GABAergic to VTA GABA neuron (VTA GABA-to-GABA) synapse utilizing whole-cell electrophysiology in GAD67 GFP knock-in mice. Our findings revealed an exceptionally rare duo-plasticity …

Determining The Role Of Noncoding Insertion And Deletion Mutations In Lung Cancer, Zachary Everton, Matthew H. Bailey

Library/Life Sciences Undergraduate Poster Competition 2024

Background

● Cancer is a disease in which cells grow and divide at an uncontrolled rate and cause damage to surrounding tissue and is caused by mutations in the cells’ DNA.

● Though some cancer-causing mutations are inherited from parents, most cancer-causing mutations emerge over the course of a person’s life and are localized to the tumor. These localized mutations are also known as somatic mutations.

● The human genome is over 6.27 billion base pairs long and cannot be read from end to end; instead it is read in small pieces that are aligned to best-matching sequences in the …

The Effect Of Epicatechin And Its Microbial Metabolites On Differing Pathways Of Beta-Cell Death In Type I And Type Ii Diabetes, Aubree Bench, Jeffery S. Tessem

Library/Life Sciences Undergraduate Poster Competition 2024

The pathogenesis of type 1 (T1D) and type 2 diabetes (T2D) is associated with progressive beta-cell death and loss of insulin secretion, making functional betacell mass preservation a priority in the treatment of diabetes. T1D beta-cell death is primarily mediated by autoimmune exposure of beta-cells to proinflammatory cytokines such as IL-1b, TNFa, and IFNg (1, 2). Beta-cell loss in T2D, however, is characterized by damage caused by a destructive metabolic state of persistent hyperglycemia and elevated free fatty acid (FFA) levels (2, 3). Our lab has shown that the monomeric flavonoid epicatechin and its metabolites hippuric acid, homovanillic acid, and …

Understanding The Impact Of Post-Translational Modifications On Nucleosome Positioning, Bronwyn Kennington-Nitz, Steven Johnson, Sophie Lo, Michael Mann, David Bates

Library/Life Sciences Undergraduate Poster Competition 2024

The placement of histones along DNA is known to be a significant factor in determining gene expression in eukaryotic cells, with post-translational modifications (or PTMs) helping modulate gene expression by acting as an intermediate to other factors. Using the Lys>Gln and Acetyl-Lys mutations of H3, our working hypothesis is that acetylation will decrease the overall strength of positioning, and that mutations will have an identical or nearly identical effect on nucleosome positioning.

Understanding Refractory Status Epilepticus With Novel Hd-Mea Technology, Isaac Stubbs, Ryley Parrish, Melissa Blotter, Max Holmes, Skyler Russell

Library/Life Sciences Undergraduate Poster Competition 2024

3rd Place Oral Presentation

Status Epilepticus (SE) is a severe medical condition marked by continuous seizures lasting over 5 minutes. When SE becomes resistant to anticonvulsant drugs, the condition is known as Refractory Status Epilepticus (RSE), which lacks effective treatments and has a mortality rate of 38%. RSE lacks effective treatments partially due to our limited understanding of the mechanisms that lead to patient antiepileptic drug resistance.

Solving The Hiv Enigma: Investigating Mutant Long-Term Non-Progressor Vpr Strands, Megan Knight, Bradford Berges

Library/Life Sciences Undergraduate Poster Competition 2024

Different variants of HIV:

➢ Rapid Progressor: aggressive symptoms, quick progression into AIDs

➢ Wild-Type: regular symptoms, regular progression into AIDs

➢ Long-Term Non-Progressor: little-

Jaspine B And The Sea Sponge That Fights Cancer, Jack Davis, Jared Barrott, Adriene Pavek, Farjana Afrin, Sameena Mateen, Brendon Meldrum, Rocio Rojas, Pamela Diaz, Megan Condie, Ali Aghazadeh-Habashi, Srinath Pashikanti

Library/Life Sciences Undergraduate Poster Competition 2024

Jaspine B is a natural marine product, derived from the sea sponge, Jaspis, found in some tropical climates. Jaspine B has been shown to be an effective treatment in some cancers with an upregulation of sphingomyelin synthase. This research aimed to understand the effects of Jaspine B on synovial sarcoma, and investigate its potential to be used as targeted treatment in other cancers that have an upregulation of sphingomyelin synthase

Ivermectin Activates Striatal Cholinergic Interneurons To Enhance Dopamine Release, Tyler Love, Jordan Yorgason, Hillary Wadsworth, Alicia Warnecke, Joshua Barlow, Emma Steimle, Joakim Ronström, Pacen Williams, Christopher Galbraith, Jared Baldridge, Michael Jakowec, Daryl Davies

Library/Life Sciences Undergraduate Poster Competition 2024

• The substantia nigra compacta releases dopamine into the dorsal striatum, a brain region associated with movement and motivation

• Cholinergic interneurons in the dorsal striatum can directly cause dopamine release

• IVM is a known positive allosteric modulator of P2X4 receptors as well as nicotinic

• acetylcholine receptors

• Ivermectin is known to affect many dopamine linked behaviors, but no studies have been conducted to determine if Ivermectin is able to modulate dopamine release

Is Edna Concentration In Staphylococcus Aureus Biofilm Affected By Nanotube Coating?, Brooklyn Z. Jones, Bradford K. Berges, Lucy C. Bowden

Library/Life Sciences Undergraduate Poster Competition 2024

1st Place Oral Presentation

• ~30% of artificial joint failure is caused by infection1

• 80-100% of patients who receive external fixator pins will experience an infection2

• Most of these infections are caused by Staphylococcus aureus

• S. aureus forms biofilms (surface-associated collections of bacteria) that are extremely difficult to treat

• eDNA provides structure and protection to the biofilm

In Search Of Super-Scents For Carnivore Attraction, Megan Doxey

Library/Life Sciences Undergraduate Poster Competition 2024

Find chemical scents that are more effective at alluring North American predators than what is commercially available, then isolate the scent’s chemical structure to create better trapping lures.

Fish Tattoos: The Evolutionary Cost Of Black Spot Disease, Eric J. Morris, Jerry B. Johnson

Library/Life Sciences Undergraduate Poster Competition 2024

QUESTION

Does Black Spot Disease increase the fitness of male fishes?

HYPOTHESIS

We hypothesize that Black Spot Disease will increase the fitness of male fishes. We predict that female fishes will exhibit an association preference for infected males over healthy males when given the choice between the two. This observed preference would suggest that BSD is advantageous for male fishes

Myofiber Necrosis To Electrical Stimulation-Induced Damage: Influence Of Menstrual Cycle Phase, Collin Deshler, Brandon Pfeifer, Mohadeseh Ahmadi, Werner N. Hunter, Madeline N. Nielsen, Krista S. Shimizu, Robert D. Hyldahl

Library/Life Sciences Undergraduate Poster Competition 2024

• Estrogen plays important roles in women's overall health, including cardiovascular health, metabolism, bone, connective tissue, and skeletal muscle.
• Existing evidence, mostly based on studies with ovariectomized rodents or post-menopausal women suggests that estrogen is essential for normal muscle recovery, growth, and function.
• Evidence indicates that estrogen plays a role in facilitating skeletal muscle regeneration by activating satellite cells.
• There is a lack of research on the impact of estrogen levels on skeletal muscle damage and recovery in premenopausal populations who have fluctuating levels of estrogen throughout their menstrual cycle.
• The purpose of this study was to determine how menstrual cycle …

Using Arbuscular Mycorrhizal Fungi To Help Establish And Increase Vigor Of Plants In Mineland Soils, Melissa Burrell, Brad Geary, Shannon Nelson, Josh Moroni De Santiago Lazalde, Scott Kent, Matthew Madsen

Library/Life Sciences Undergraduate Poster Competition 2024

• Vegetation establishment in areas impacted by mining can be difficult due to a lack of beneficial soil microbes.
• The introduction of soil mutualists, such as arbuscular mycorrhizal fungi (AMF), may improve mineland revegetation efforts. AMF forms a mutually beneficial relationship with plants to aid in nutrient absorption and improve water uptake.
• Practitioners commonly need to decide where to source their AMF. Locally collected AMF requires effort to collect and process, but this source should be adapted to the restoration site. Commercial products are easy to obtain, but their strains may not be suitable for the environment they are being placed …

Understanding The Molecular Phenotype Of Obesity-Associated Clear Cell Renal Cell Carcinoma In The Context Of The Obesity Paradox, Elisa Mcrae, Joseph Wride, Carter Norton, Matthew Tufts, Connor Peterson, Badí Quinteros, Olivia Rodriguez, Alejandro Sanchez

Library/Life Sciences Undergraduate Poster Competition 2024

• Clear cell renal cell carcinoma (ccRCC) is the most prevalent histologic subtype of renal cell carcinoma in the US, constituting 85% of cases, with an estimated 69,000 new cases in 2023.
• Obese patients have an elevated risk of developing ccRCC.
• Despite the increased risk, obese patients with ccRCC paradoxically exhibit better outcomes compared to normal-weight patients, known as the “obesity paradox.”
• Understanding the molecular phenotype of obesity-associated ccRCC is the focus of this study.

The Cold Hard Truth: Cryopreserved Tissue Is Superior To Ffpe Tissue In Molecular Analysis, Delaney Anderson, Jeffrey Okojie, Mackenzie Burr, Peyton Worley, Isaac Parker, Jack Davis, Bridger Kearns, Jared Barrott

Library/Life Sciences Undergraduate Poster Competition 2024

Personalized cancer care requires molecular characterization of neoplasms. While the research community accepts frozen tissues as the gold standard analyte for molecular assays, the source of tissue for all testing of tumor tissue in clinical cancer care comes almost universally from formalin-fixed, paraffin-embedded tissue (FFPE). Specific to genomics assays, numerous studies have shown significant discordance in genetic information obtained from FFPE samples and cryopreserved or flash frozen samples. To explain the discordance between FFPE samples and cryopreserved samples, a head-to-head comparison between FFPE and cryopreserved tissues was performed to analyze the DNA yield, DNA purity and DNA quality in terms …

Valproic Acid Alters Larval Behavior And Neuronal Composition Within The Optic Tectum Of Zebrafish, Bailey J. Calder, Jacquelyne C. Howell, Michael J. Zeyer, Annalie Martin, Sierra C. Dixon, Shane M. Lilya, Jason M. Hansen, Arminda Suli

Library/Life Sciences Undergraduate Poster Competition 2024

The mammalian superior colliculus (SC) and its non-mammalian homolog–the optic tectum (OT)–are midbrain structures that integrate multimodal sensory inputs and guide involuntary movements in response to relevant environmental cues. Recent work has drawn strong connections between the functions of the SC/OT and behavioral deficits observed in autism spectrum disorder (ASD), thus implicating this structure as a possible site affected in ASD. Since fetal exposure to valproic acid (VPA) has been associated with increased prevalence of ASD in humans, and ASD-like phenotypes in animal models, we exposed embryonic zebrafish to VPA to investigate the connection between ASD and OT development. In …

The Biomechanics Of Ursine Predation: Investigating The Force Generation And Mechanical Properties Of Bear Claws And Teeth In Predatory Behavior, Katie Dooley, Megan Doxey, Josh Jewell, Tom Smith

Library/Life Sciences Undergraduate Poster Competition 2024

• Studied over 2,200 human-bear conflicts in North America and witnessed the shear force that bears can exert to access food and eliminate any threats.
• Polar bears at the Hogle Zoo in Salt Lake City punctured and bent high density polyurethane (HDPE) objects when playing with them.
• This prompted research into the force it takes bears to puncture objects with their canines and claws.

The Changing Tumor Microenvironment Of Non-Small Cell Lung Cancer, Mackenzie Hansen, Kim O'Neill, Qin Zhou, Yoko Derose, Magdalena Kovacsovics, Benjamin Brintz, Benjamin L. Witt, Siwen Hu-Lieskovan

Library/Life Sciences Undergraduate Poster Competition 2024

Lung cancer is the leading cause of cancer related death in the United States, and non-small cell (NSCLC) is the most common type. An increasingly prevalent treatment in the last few years for NSCLC has been immunotherapy. However, for immunotherapy to be the most effective, we need to have a better understanding of how the immune system interacts with cancer in all stages. Specifically, we need to know where the immune cells reside, how they interact with each other, and how these populations change as the disease progresses. To define the tumor microenvironment, we stained 27 whole tumor slides with …

The Effect Of Percussive Massage On Collagen Gene Expression In Skeletal Muscle, James Bartling, Robert D. Hyldahl, Emma Schaugaard, Mohadeseh Ahmadi

Library/Life Sciences Undergraduate Poster Competition 2024

INTRODUCTION

• Exercise is a critical aspect of healthy living due in part to its effects of muscle adaptation, which are largely regulated by alterations in gene expression

• Sedentary behavior can be required by diverse life circumstances, suggesting a need to reproduce the beneficial effects of exercise by an alternative means

• Like exercise, percussive massage introduces a mechanical strain on the muscle, which could potentially replicate a similar remodeling response of the extracellular matrix (ECM). However, this has not yet been studied

• Collagen 1,3,&4 are major components of the ECM that adapt in response to exercise, and …