Life Sciences Commons^™

Draining Chicago’S Food Swamps: Legal Approaches, Sofia Fernandez

DePaul Journal of Health Care Law

Public health is a collective responsibility of society to improve the health and wellbeing of communities, focusing on preventing disease and promoting health as opposed to providing medical care for those already ill.1 The law consists of rules issued and enforced by government entities “through which populations organize their governments, regulate social and economic interactions, and guide behavior.”2 Public health law exists at the intersection of these two fields, comprising “the legal powers and duties of the state to identify, prevent, and ameliorate risks to the health of populations, as well as the study of legal structures that have a …

Depaul Digest

DePaul Magazine

College of Education Professor Jason Goulah fosters hope, happiness and global citizenship through DePaul’s Institute for Daisaku Ikeda Studies in Education. Associate Journalism Professor Jill Hopke shares how to talk about climate change. News briefs from DePaul’s 10 colleges and schools: Occupational Therapy Standardized Patient Program, Financial Planning Certificate program, Business Education in Technology and Analytics Hub, Racial Justice Initiative, Teacher Quality Partnership grant, Intimate Partner Violence and Brain Injury collaboration, School of Music Career Closet, Sports Photojournalism course, DePaul Migration Collaborative’s Solutions Lab, Inclusive Screenwriting courses. New appointments: School of Music Dean John Milbauer, College of Education Dean Jennifer …

Impact Of Retinoic Acid Receptor Alpha Conditional Knockout On Ovarian Follicle Development In The Mouse, Zlata Bogin

College of Science and Health Theses and Dissertations

When there is abnormal endocrine signaling in the follicles, infertility, and ovarian diseases such as polycystic ovarian syndrome (PCOS), premature ovarian failure (POF), and different types of ovarian cancers may occur. Retinoic acid (RA), a biologically active derivative of vitamin A, is a critical signaling molecule that plays a vital role in various physiological processes, including embryonic development, tissue differentiation, and reproductive function. RA has been observed to influence granulosa cell proliferation through a cell signaling cascade involving Retinoic Acid Receptors (RARs), which have three isoforms alpha, beta, and gamma. We characterized a new retinoic acid receptor alpha (RARA) conditional …

Investigating The Salinity Tolerance Of The Swordtail (Xiphophorus Hellerii), Alexandra Megan Krak

College of Science and Health Theses and Dissertations

The swordtail, Xiphophorus hellerii, is a freshwater fish species native to Mexico and Central America and is commonly used in the tropical aquarium trade. Swordtails have been shown to have limited survival in 6 ‰ salinity (Nanda et al., 2016), suggesting they may have a greater salinity tolerance than previously expected. Using a gradual acclimation method, we examined the salinity tolerance and swim performance of this species. Freshwater-reared female swordtails were housed in 29-gallon aquaria. A control group was held in freshwater throughout the experiment. For the experimental group, the salinity was increased by 2 ‰ every week until 30 …

Characterization Of The Immune Deficiency Pathway During Female Meiosis In Drosophila Melanogaster, Sarah Mashburn

College of Science and Health Theses and Dissertations

Organisms can defend against pathogens by significantly increasing the diversity of their progeny, so that some progeny are more likely to survive infection. This led to the prediction that infection should cause an increase in recombination rates which was seen in a previous study. However, the mechanism that regulates recombination rates in response to infection is not understood and in that study they did not provide a mechanism for how that can occur. In an RNAi screen, our lab found the gene mustard (mtd) is required for normal recombination rates. This gene was previously shown to be part of the …

Observations Of 25 Ghz Methanol Masers In W51a, Peter Wagstaff

College of Science and Health Theses and Dissertations

High mass stars are important because they alone are responsible for creating the heavy elements in the Universe. The observation of high mass star formation remains a challenging problem in astronomy because high mass stars form in densely clustered environments at large distances from us. Therefore, high angular resolution observations are required to unravel the action taking place in these dense environments. Masers can be used to observe distant regions with high angular resolution because masers are compact and bright sources. Class I methanol masers are believed to form in outflows from protostars where the shock generated by the outflowing …

Comparisons Of Above- And Below-Ground Carbon Storage In A Northeastern Illinois Urban Forest Following Rhamnus Cathartica And Fraxinus Spp. Removal, River Sanchez-Dudik, Elene Drosos

DePaul Discoveries

This study focused on quantifying potential differences in ecosystem services (carbon storage, soil organic matter, macroarthropod density) in a small, partially restored urban forest in order to determine if common buckthorn and standing dead ash removal effects can be detected while restoration is on-going. We calculated aboveground carbon storage (tons/total area) using whole tree biomass equations and compared this to i-Tree Canopy estimations. We collected SOM through loss-on-ignition and collected macroinvertebrates by pitfall trapping to determine differences along transects. Aboveground carbon storage, soil organic matter, and macroinvertebrate total results for this study were found to be statistically not significant, indicating …

The Influence Of Vehicular Traffic And Land Use Typology On The Spatial Patterns And Concentrations Of Soil Lead (Pb) In The Uptown Community Area Of Chicago, Andreas 'Dre' Harris

DePaul Discoveries

Lead (Pb) is a harmful element whose presence threatens the well-being of living organisms and their environments. There are higher concentrations and an increased risk of Pb exposure in areas that provide fewer natural pathways for Pb to accumulate into. In urban areas, the soil is one of the most common and available environmental sinks for Pb accumulation. This study examines the total soil Pb concentrations in relation to land-use types and average daily traffic volumes (cars/day) in each census tract in the Uptown Community Area of Chicago. This study provides insight into how land use and traffic volume may …

Understanding The Effect Of Ranching On Quercus Brandegeei Recruitment In The Sierra La Laguna Biosphere Reserve, Xavier O. Espinoza

DePaul Discoveries

In this study, we attempt to deepen our understanding of the mechanisms responsible for Quercus brandegeei’s observed lack of regeneration by identifying which animal species (wild and domesticated) most frequently were observed eating, passing by, or searching for seeds and seedlings. We established 10 paired plots (10 enclosed and 10 immediately outside enclosures) and positioned one motion-activated camera in each plot to observe animal visitations to Quercus brandegeei individuals over the course of several months (October 2019 – March 2020). No seeds and seedlings survived outside of enclosed areas at the end of the study based on their absence. Very …

Depaul Discoveries Volume 12 Cover Art, Katherine Petralia

DePaul Discoveries

No abstract provided.

An Analysis Of Lichen Presence On Quercus And Non-Quercus In Chicagoland Area, Shelby Johnson

DePaul Discoveries

Both anthropogenic change and the spread of invasive species have led to changes in urban and forest tree diversity. Oak rust, acute oak decline, and emerald ash borer have all had a detrimental effect on tree species in the Chicagoland area. Quercus species are well known habitats for lichen species including Physcia millegrana, Physcia stellaris, Punctelia rudecta, Flavoparmelia caperata, Xanthomendosa, and Candeleria concolor. Due to the decrease in the traditional Quercus habitats for lichen and the increase in nonnative and nontraditional tree species being introduced, particularly in cities, this study aimed to compare the number and diversity of …

Development Of A 16s Reference Library For Edna Metabarcoding The Freshwater Fishes Of Western Ecuador., Hannah M. Willis, Olivia G. Schweikart, Windsor E. Aguirre

DePaul Discoveries

This project examines the use of the 16S locus to amplify neotropical freshwater fishes native to Western Ecuador in a newly created 16S reference library for DNA barcoding and eDNA metabarcoding applications. Among the orders Characiformes, Siluriformes, Cichliformes, Gobiiformes, Cryprinodontiformes, Gymnotiformes, and Perciformes, a compendium of 105 specimens were sequenced, with 43 representing new 16S sequences previously unavailable on Genbank.

Monitoring Personal Exposure To Air Quality Gradients While Biking On An Elevated Urban Trail, Gavin D. Salas

DePaul Discoveries

Air pollution is a major global health concern, specifically as it relates to the human exposome. The EPA criteria pollutants, including particulate matter (PM), carbon monoxide (CO), carbon dioxide (CO₂), and NO_x can have severe impacts on respiratory and cardiovascular health, particularly in populations with chronic illnesses such as asthma, those facing economic hardships and individuals who frequently spend time outdoors, such as bicyclists and runners. To understand the impact of air pollution on human health, it is essential to assess personal exposure. This study aimed to investigate personal exposure to air pollution levels while biking along …

Attention Visual, Baris Dingil

College of Computing and Digital Media Dissertations

This research presents an innovative approach to improving visual-spatial attention using a research tool based on the web. Recognizing the significant role visual-spatial attention plays in everyday life and cognitive function for humans, this research was undertaken with the aim of developing a user-friendly, accessible web-based tool called Attention Visual (attentionvisual.com) to enhance this crucial cognitive skill. This tool also facilitates data collection, potentially accelerating the pace and enhancing the quality of related research. Both qualitative and quantitative methods were utilized for data collection and analysis. In order to stimulate improvements in visual-spatial attention, the tool’s algorithm was structured to …

Spatiotemporal Dynamics Of Ticks And Tick-Borne Disease At Neon Sites Across A Sub-Continental Scale, Ana Sofia Rivera

College of Science and Health Theses and Dissertations

Tick-borne diseases in humans such as Lyme disease cases in the United States have doubled between 2004 and 2016. Understanding the dynamics of infectious diseases has long been of interest for ecologists. Tick and tick-borne diseases are influenced by temperature and precipitation at local scales, indirectly through mast seeding in forest trees which increases the abundance of tick hosts (e.g., small mammals), as well as direct effects on survival. Most tick studies occur at local scales that comprise only a small part of their range. The aim of my thesis is to characterize spatiotemporal dynamics of ticks and tick-borne diseases …

Temperature Effects On The Development Of The Axial Skeleton And Body Shape In Astyanax Mexicanus (Teleostei: Characidae), Joseph David Forberg

College of Science and Health Theses and Dissertations

Humans are causing large-scale changes in environmental conditions across the planet including in temperature. Changes in the environmental conditions can lead to phenotypic changes in ectotherms that affect adaptively important traits like body shape and the axial skeleton. Previous studies have shown that temperature changes during development significantly affects body shape and vertebral number in the Mexican tetra Astyanax mexicanus. How these changes arise early in development is not clear. In this study, I examine how changes in developmental temperature affect body shape in larval and juvenile fish, the order of ossification of elements of the axial skeleton, the size …

Characterization Of A Stenotrophomonas Maltophilia Bacteriophage, Edward Eshoo

College of Science and Health Theses and Dissertations

Stenotrophomonas maltophilia is a ubiquitous Gram-negative, multidrug resistant, opportunistic bacterial pathogen that causes various infections in humans. Recently, the use of bacteriophages as therapeutic agents, has gained interest as an alternative to traditional antibiotics. This thesis describes the isolation, purification, and characterization of S. maltophilia bacteriophage Bfi2 and discusses its activity against related, and often co-isolated, bacterial pathogens. Amplification of the phage resulted in clear, well-defined plaques and a titer of 1.73 ± 0.38 x 1011 PFU/ml. Bfi2 demonstrated the ability to lyse 55% of the S. maltophilia strains tested, suggesting that it has a moderate host range. However, the …

Niche Overlap In Sympatric Rocio (Teleostei: Cichlidae) Of Guatemala, Cesar Estuardo Fuentes Montejo

College of Science and Health Theses and Dissertations

Rocio is a small genus of Neotropical freshwater fishes that is distributed in Atlantic drainages of northern Middle America. Two species in the genus exhibit sympatry in the Río Dulce basin (in Izabal, Guatemala), where one species is endemic (R. spinosissima), while the other only includes this area as part of a larger geographic range (R. octofasciata). Unfortunately, the ecology of these species has been poorly studied. This study sought to determine the ecological and morphological differences between these two closely related sympatric freshwater fishes. We hypothesized that R. octofasciata would exhibit greater ecological and morphological …

Stratospheric Effects On Uv, Speed Of Sound, Pressure, And Temperature, Joshua V. Chis, Joana Diaz, Brianna E. Ortiz, Imani G. Robertson, Jelani A. Shadd

DePaul Discoveries

The atmosphere is composed of several layers, each with its own distinct environment varying in temperature, pressure, and levels of UV radiation. Quantifying these varying parameters proves to be useful in understanding atmospheric composition in greater detail. Variance in the composition of the atmosphere allows for the study of the evolution of physical phenomena at different altitudes. Our group quantified this variance using a high-altitude weather balloon and designed an experimental method to observe the nature of sound propagation through varying altitudes. The goal was to develop an altitude-dependent model of the speed of sound by using an open-air, microcontroller-based …

What's In Your Soil? A Comparative Assessment Of Total Lead In Soils In Southwest Side And North Side Chicago Communities, Jennifer Garcia

DePaul Discoveries

In Chicago, city officials continue to locate polluting industries in predominately Black and Hispanic/Latinx neighborhoods. Lower income families are disproportionately exposed to greater amounts of toxic chemicals such as lead (Pb). While the City of Chicago focuses its effort in removing industrial sites from the North Side, a predominately white community area, sources of industrial pollution are more likely to be found in communities of color. Due to the prevalent sources of Pb on the Southwest side, residential soil is often highly disturbed and contaminated. Pb is a serious neurotoxin, and ingestion or inhalation of Pb contaminated soil and dust …

Effects Of Elevated Co2 Concentrations And Elevated Temperatures On Isoprene Emissions Of Rhamnus Cathartica (European Buckthorn), Quercus Rubra (Red Oak) And Quercus Michauxii (Swamp Chestnut Oak), Janet G. Núñez

DePaul Discoveries

Tropospheric ozone is a ground-level pollutant and is produced from primary air pollutants like nitrogen oxides and volatile organic compounds (VOCs). While many VOCs are anthropogenic, isoprene is emitted from certain species of plants and reacts with nitrogen oxides to form ozone. Previous studies have found that isoprene can be suppressed by CO₂, but such suppression can be reduced under conditions of increased temperature. However, this pattern is not seen in all plants capable of emitting isoprene. The focus of this is study is to determine if similar patterns are present in the invasive tree species of buckthorn …

Atmospheric Phosphorus Deposition Into A Fresh Water Wetland: Prairie Wolf Slough Restored Wetland, Isaac B. Daitzchman

DePaul Discoveries

Phosphorus is a major element needed for plant growth. Excess phosphorus from agricultural runoff and urban stormwater can enter waterways, resulting in growth of toxic algal blooms that are deleterious to local fauna. One way to remove phosphorus is by diverting agricultural and urban runoff into wetlands. One such wetland is Prairie Wolf Slough (PWS), located in north suburban Chicago, IL. Stormwater enters PWS through an inlet channel and exits through an outlet pipe into the Chicago River. A 16-year study documented that a significantly greater mass of phosphorus leaves PWS than enters through the inlet. This study accounted for …

Synthesis Of Triaminopyrimidine Derivatives For Inhibition Of Inflammatory Caspases, Marianna C. Haddad, Caitlin Karver

DePaul Discoveries

Caspases are cysteine-dependent aspartic proteases whose functions are connected to different mechanisms of cell death and inflammation. As caspase-1 plays a significant role in the immune response, its activity has been of interest as a target for inhibitor development as its inhibition will reduce the levels of pro-inflammatory cytokines in inflammatory diseases, thus minimizing the symptoms that arise and serving as a possible therapeutic approach. Prior work discovered a family of potent inhibitors of caspase-1 with a common triaminopyrimidine scaffold. To further explore structure-activity relationship profiles of potential inhibitors of caspase-1, two different syntheses were attempted to create two new …

Optimization Of Dye Molecules For Use In Studying Inflammatory Caspase Enzymes, Josiah D. Stewart, Phasu Sirinit

DePaul Discoveries

Inflammatory caspases are important enzymes in the initial immune response to pathogens. A common method of studying caspase activity is through the use of fluorogenic assays, in which the cleavage of a substrate by an enzyme results in the emission of fluorescence. Fluorogenic assays require the use of fluorophores: molecules that will fluoresce upon the cleavage of a substrate. Different fluorophores have different characteristics, and these characteristics can be analyzed in order to determine which fluorophores will be most suitable for activity assays. Two commercially available fluorophores were compared for use in fluorogenic assays of inflammatory caspases: MCA and EDANS. …

Depaul Discoveries Volume 11 Cover Art, Dina Khdair

DePaul Discoveries

No abstract provided.

Hiding Behind The Title: Bridging The Gap Between Identity And Leadership Through Neuroscience, Emotional Intelligence And Ethical Management, Alicia S. Huddleston

College of Education Theses and Dissertations

Leadership is the key determinant in the success of any organization, and leaders have an immeasurable impact on the lives and performances of those they have been entrusted to develop, support and lead. School principals are an integral part of the leadership tapestry within society and many people have been impacted by a school principal. Often enough, there are individuals who lead with or behind their title versus understanding first who they are intrinsically, and then working through those dynamics to effectively lead their own lives. When leaders are able to do this, then and only then are they equipped …

The Effects Of Triaminopyrimidine Analogs And Gold(I) Chloride Compounds On Cell Proliferation And Apoptosis In Mda-Mb-231 Human Breast Cancer Cells, Robin Redline

College of Science and Health Theses and Dissertations

Breast cancer is a common disease that affects both women and men all over the world. Triple negative breast cancer is an aggressive subtype of breast cancer with poor survival statistics and few available treatment options. Uncontrolled cell proliferation and the ability to avoid programmed cell death, apoptosis, are two shared hallmarks of cancers. Previous research has shown a group of heterocyclic molecules called triaminopyrimidines, not tested in this study, may be effective antiproliferative agents. Previous research has also shown that some gold(I) complexes not tested in this study, may be promising anticancer agents. In this study, a few chemicals …

Phylogenomics And Population History Of Cichlid And Live-Bearing Fish Species In Lowland Neotropical Rivers, Konrad Taube

College of Science and Health Theses and Dissertations

Within Middle America, cichlids and poeciliids account for more than half of the fish biodiversity. This richness in fish fauna highlights the complexity of Middle American biogeography: no other continental area on earth contains within its range the unparalleled abundance of secondary freshwater fish species (fish that can tolerate both saltwater and freshwater). Research into the biogeography of widely distributed Middle American freshwater fish is essential to understanding this unique region.

Three species of freshwater fishes (Belonesox belizanus – Pike killifish, Vieja maculicauda – Black belt cichlid, and Gambusia nicaraguensis – Nicaraguan mosquitofish) are widely distributed across rivers on …

Patterns Of Torso Morphology In Extant Quadrupedal Amniotes And Their Paleontological Applications, Myles M.A. Walsh

College of Science and Health Theses and Dissertations

The relationship between form and function is an overarching theme in the field of biology. Specifically, body size and shape are important factors when considering the biology of an organism. This study examined the torso morphology of a diverse set of 124 extant terrestrial and semi-aquatic amniote taxa using a novel approach to construct approximated torso shape groupings. My study shows the presence of 10 distinct torso shapes within the examined amniotes, and these torso shape groupings were used to evaluate hypotheses associated with diet and limb bone length as well as explore potential evolutionary patterns. Herbivores had a more …

Triangulation And Finite Element Method For A Variational Problem Inspired By Medical Imaging, Tim Komperda, Enrico Au-Yeung

DePaul Discoveries

We implement the finite element method to solve a variational problem that is inspired by medical imaging. In our application, the domain of the image does not need to be a rectangle and can contain a cavity in the middle. The standard approach to solve a variational problem involves formulating the problem as a partial differential equation. Instead, we solve the variational problem directly, using only techniques available to anyone familiar with vector calculus. As part of the computation, we also explore how triangulation is a useful tool in the process.