Biology and Biomimetic Materials Commons^™

Molecular Dynamics Simulations Of Interaction Of Dna Nucleotides And Lignin Oligomers With Small Molecules And Interfaces, Xinjie Tong

LSU Doctoral Dissertations

Molecular dynamics (MD) simulations of interaction of DNA nucleotides with self-assembled monolayers (SAMs) provide valuable information that is critical to the development of a new DNA sequencing technique. We investigated the interactions and transport characteristics of mononucleotides moving through nanoslits with SAMs-covered surfaces. Our simulations focused on nanoslits in which the walls were composed of three different types of SAMs: methylformyl terminated, methyl terminated, and phenoxy terminated. The results demonstrated that the phenoxy terminated surfaces have the shortest required nanoslits length for nucleotides separation.

Using MD simulations, we also investigated the interaction of mono-lignin and oligo-lignols with lipid bilayers and …

Properties Of High Early-Strength Type V Cement Concrete For Rapid Repair, Nader Ghafoori, Matthew O. Maler, Meysam Najimi, Ariful Hasnat

Civil and Environmental Engineering and Construction Faculty Research

This study examines the suitability of ASTM Type V cement concrete for rapid repair applications. To this end, experimental results on transport and durability properties of high earlystrength concretes using ASTM Type V cement were compared with those of a more traditional cement used for rapid repair, i.e. Type III cement. A cement content of 445 kg/m3 (750 lb/yd3 ) was maintained for all studied concretes. The experimental program included compressive strength, absorption, rapid chloride migration, corrosion resistance, and mass loss due to freezing and thawing regimes. The results of this study revealed that use of Type III and V …

Investigation Of The Electrode Polarization Effect For Biosensor Applications, Anil Koklu

Mechanical Engineering Research Theses and Dissertations

My research focuses on electrokinetic transport. Particularly, in this dissertation, we focus on fabrication and testing of micro electrodes with nanostructured surfaces to minimize the electrode polarization (EP) effects for biosensor applications. In the first study, electrochemical deposition of gold nanoparticles on to planar gold electrodes was used to generate rough surfaces. Dendritic nanostructures that reduced EP up to two orders of magnitude was obtained by optimizing the deposition conditions. These structures also enhanced dielectrophoresis (DEP) response of our bio-chips, making them usable in physiological buffers. In further studies we discovered a universal scaling of EP in the frequency domain, …

Self-Healing Concrete Using Encapsulated Bacterial Spores In A Simulated Hot Subtropical Climate, Marwa Hassan, Jose Milla, Tyson Rupnow, Ahsennur Soysal

Publications

Bacterial concrete has become one of the most promising self-healing alternatives due to its capability to seal crack widths through microbial induced calcite precipitation (MICP). In this study, two bacterial strains were embedded at varying dosages (by weight of cement) in concrete. Beam specimens were used to identify the maximum crack-sealing efficiency, while cylinder samples were used to determine their effects on the intrinsic mechanical properties, as well as its stiffness recovery over time after inducing damage. The concrete specimens were cured in wet-dry cycles to determine their feasibility in Region 6. The results showed that the specimen groups with …

Novel Low Shear 3d Bioreactor For The Scaled Production Of High Purity Human Mesenchymal Stem Cells, Andrew Burns

KGI Theses and Dissertations

Human mesenchymal stem cells are an ideal candidate for stem cell therapies. They have been researched since the 1960’s and can differentiate into many desired functional cell types without undergoing teratogenesis. However, higher yields are needed for a marketable, successful stem cell therapy. To accomplish this, cells will have to be cultured to expand them to therapeutically relevant dosages for multiple patients. Bioreactor production is an ideal method to solve this problem.

The aim of this thesis is to test and validate a novel bioreactor for the cultivation of human mesenchymal stem cells. In this work, we investigate a novel …

Development Of A Sonically Powered Biodegradable Nanogenerator For Bone Regeneration, Avi S. Patel

University Scholar Projects

Background: Reconstruction of bone fractures and defects remains a big challenge in orthopedic surgery. While regenerative engineering has advanced the field greatly using a combination of biomaterial scaffolds and stem cells, one matter of difficulty is inducing osteogenesis in these cells. Recent works have shown electricity’s ability to promote osteogenesis in stem cell lines when seeded in bone scaffolds; however, typical electrical stimulators are either (a) externally housed and require overcomplex percutaneous wires be connected to the implanted scaffold or (b) implanted non-degradable devices which contain toxic batteries and require invasive removal surgeries.

Objective: Here, we establish a biodegradable, piezoelectric …

Development Of A Sonically Powered Biodegradable Nanogenerator For Bone Regeneration, Avi Patel

Honors Scholar Theses

Background: Reconstruction of bone fractures and defects remains a big challenge in orthopedic surgery. While regenerative engineering has advanced the field greatly using a combination of biomaterial scaffolds and stem cells, one matter of difficulty is inducing osteogenesis in these cells. Recent works have shown electricity’s ability to promote osteogenesis in stem cell lines when seeded in bone scaffolds; however, typical electrical stimulators are either (a) externally housed and require overcomplex percutaneous wires be connected to the implanted scaffold or (b) implanted non-degradable devices which contain toxic batteries and require invasive removal surgeries.

Objective: Here, we establish a biodegradable, piezoelectric …

Left Atrial Model, Borna Sobati, Sarah Porello, Tess Pate

Biomedical Engineering

The objective is to produce an electrophysiological model of an adult human left atrium. This model will be used to test mapping probe catheters used for locating cardiac arrhythmias against current technology used in practice. Dr. Chris Porterfield requested this model and other physicians or probe catheter manufacturers may also use this product in the future. Dr. Porterfield also discussed the possibility of future senior project groups using the model as a bench test for designing new catheter tips. The model will precisely simulate electrical behaviors of the heart in normal as well as arrhythmic conditions. Ideally, the model will …

The Effect Of Defects And Surface Modification On Biomolecular Assembly And Transport, Haneen Martinez

Nanoscience and Microsystems ETDs

Nanoscale transport using the kinesin-microtubule (MT) biomolecular system has been successfully used in a wide range of nanotechnological applications including self-assembly, nanofluidic transport, and biosensing. Most of these applications use the ‘gliding motility geometry’, in which surface-adhered kinesin motors attach and propel MT filaments across the surface, a process driven by ATP hydrolysis. It has been demonstrated that active assembly facilitated by these biomolecular motors results in complex, non-equilibrium nanostructures currently unattainable through conventional self-assembly methods. In particular, MTs functionalized with biotin assemble into rings and spools upon introduction of streptavidin and/or streptavidin-coated nanoparticles. Upon closer examination of these structures …

Evaluation Of Guar Gum As A Novel Adsorbent, Philicia Geiser

Theses and Dissertations

Guar gum (GG) is a promising product increasingly used in a variety of industries. It is nontoxic, inexpensive, and biodegradable. This research evaluated novel approaches using GG as an adsorbent for aromatic organic water contaminants. The application of GG demonstrated some effectiveness against all contaminants tested. Two brands of GG were tested using 5 different GG treatment strategies. Various experiments demonstrated nearly complete removal of Allura Red dye, Brilliant Blue dye, Erythrosine B dye, Methylene Blue dye, Tartrazine dye, and 2,4-dinitrotoluene; additionally, 78% adsorption was observed for Fast Green dye. GG typically removed less than 10% of toluene, which rapidly …

Optimization Of Conditions For Production Of Mechanically Strong Suckerin Protein Hydrogels, Autumn Furniss

Williams Honors College, Honors Research Projects

Hydrogels are polymer networks with a large water content. Uses include biomedical applications like drug delivery, wound dressing, and more. Current natural hydrogels lack mechanical robustness. Squid ringed teeth (completely protein) have a modulus comparable to thermoplastics; adding this to hydrogels could improve modulus while maintaining biocompatibility.

Three experiments were performed: Hofmeister solubility study, SRT powder additive, and SRT aqueous solution. The first showed that LiCl solution without acetic acid dissolved the most SRT; overall LiCl dissolved more than all others. SRT as a powder additive increased the modulus of the hydrogels, however the error in the measurements make it …

Nanoharvesting And Delivery Of Bioactive Materials Using Engineered Silica Nanoparticles, Md Arif Khan

Theses and Dissertations--Chemical and Materials Engineering

Mesoporous silica nanoparticles (MSNPs) possess large surface areas and ample pore space that can be readily modified with specific functional groups for targeted binding of bioactive materials to be transported through cellular barriers. Engineered silica nanoparticles (ESNP) have been used extensively to deliver bio-active materials to target intracellular sites, including as non-viral vectors for nucleic acid (DNA/RNA) delivery such as for siRNA induced interference. The reverse process guided by the same principles is called “nanoharvesting”, where valuable biomolecules are carried out and separated from living and functioning organisms using nano-carriers. This dissertation focuses on ESNP design principles for both applications. …