Signal Processing Commons^™

Adaptive Noise Estimation And Denoising With Deep Learning For Nmr Spectroscopy, Naveen Asokan

McKelvey School of Engineering Graduate Student Theses & Dissertations

Nuclear Magnetic Resonance (NMR) spectroscopy is a powerful analytical technique widely used for molecular structure elucidation in chemistry, biology, and medicine. However, spectral accuracy is often degraded by noise—particularly in low acquisition time settings—resulting in reduced resolution and obscured chemical features. While traditional noise reduction techniques such as signal averaging can improve spectral quality, they require longer acquisition times, limiting their utility in real-time and high-throughput applications.

This thesis presents a deep learning-based denoising framework designed to enhance the quality of complex-valued NMR spectra. The proposed model, built upon a U-Net architecture, incorporates both real and imaginary components of the …

Painting Rich Six-Dimensional Pictures Using Polarized Fluorescence Microscopy, Matthew D. Lew

Electrical & Systems Engineering Publications and Presentations

No abstract provided.

Estimating And Detecting Slow-Wave Events In Eeg Signals, Zhenghao Xiong

McKelvey School of Engineering Graduate Student Theses & Dissertations

Slow wave activity (SWA) is an electroencephalogram (EEG) pattern commonly occurring during anesthesia and deep sleep, and is hence a candidate biomarker to quantify such states and understand their connection to various phenotypes. SWA consists of individual slow waves (ISW), high-amplitude deflections lasting for approximately 0.5 to 1 second, and occurring quasi-periodically. This latter fact poses a challenge for conventional power spectral density EEG analysis methods that perform best when there is persistency of oscillatory activity. In this work, we pursue a time-domain detection framework for identifying and quantifying ISWs as a metric for SWA. Our method works, in essence, …

Watch: A Distributed Clock Time Offset Estimation Tool On The Platform For Open Wireless Data-Driven Experimental Research, Cassie Jeng

McKelvey School of Engineering Graduate Student Theses & Dissertations

The synchronization of the clocks used at different devices across space is of critical importance in wireless communications networks. Each device’s local clock differs slightly, affecting the times at which packets are transmitted from different nodes in the network. This thesis provides experimentation and software development on POWDER, the Platform for Open, Wireless Data-driven Experimental Research, an open wireless testbed across the University of Utah campus. We build upon Shout, a suite of Python scripts that allow devices to iteratively transmit and receive with each other and save the collected data. We introduce WATCH, an experimental method to estimate clock …

Locating Unknown Interference Sources With Time Difference Of Arrival Estimates, Chia Ying Kuo

McKelvey School of Engineering Graduate Student Theses & Dissertations

Adaptive spectrum sharing between different systems and operators is being deployed in order to make use of the wireless spectrum more efficiently. However, when the spectrum is shared, it can create situations in which an operator is unable to determine the identity of an interferer transmitting an unknown signal. This is the situation in which the POWDER testbed found itself in, starting in late 2021. This thesis provides general-purpose tools for operators to locate an unknown signal source in real-world outdoor environments. We used cross-correlation between the signals measured at multiple time-synchronized base stations to estimate the time difference of …

Design & Analysis Of Mixed-Mode Integrated Circuit For Pulse-Shape Discrimination, Bryan Orabutt

McKelvey School of Engineering Graduate Student Theses & Dissertations

In nuclear science experiments it is usually necessary to determine the type of radiation, its energy and direction with considerable accuracy. The detection of neutrons and discriminating them from gamma rays is particularly difficult. A popular method of doing so is to measure characteristics intrinsic to the pulse shape of each radiation type in order to perform pulse-shape discrimination (PSD).

Historically, PSD capable systems have been designed with two approaches in mind: specialized analog circuitry, or digital signal processing (DSP). In this work we propose a PSD capable circuit topology using techniques from both the analog and DSP domains. We …

Nevr: Learning Continuous Neural Video Representation With Local Feature Codes For Video Interpolation, Wentao Shangguan

McKelvey School of Engineering Graduate Student Theses & Dissertations

Video frame interpolation aims to synthesis a non-exists intermediate frame guided by two successive frames. Recently, some work shows excellent results in learning continuous representation of temporally-varying 3D objects with neural field (NF), which could be used for interpolating the original video. However, these methods require several videos from different viewing angles, the information of camera poses, learning for each specific scene, and achieving sub-optimal results for video frame interpolation. To this end, we propose a new learning neural field representation-based model, Neural Video Representation (NeVR) to learn a continuous representation of videos for high-quality video interpolation. Unlike the traditional …

Robust Control Of Burst Suppression Amid Physical And Neurological Uncertainty, Stephen Ampleman, Shinung Ching

McKelvey School of Engineering Graduate Student Theses & Dissertations

Burst suppression is a clinical term describing a phenomenon in which the electroencephalogram (EEG) of a sedated patient produces behavior that switches between higher frequency and amplitude bursting to lower frequency and lower amplitude suppression. This phenomenon can be observed during general anesthesia, hypothermia, or in an otherwise induced coma state. In a clinical setting, this phenomenon is typically induced by sedation from a drug such as propofol (2,6-diisopropylphenol). The level of sedation can be quantified by something called the burst suppression ratio (BSR), which is defined as the amount of time that a patient’s EEG is in a suppressed …

Measuring Localization Confidence For Quantifying Accuracy And Heterogeneity In Single-Molecule Super-Resolution Microscopy, Hesam Mazidi, Tianben Ding, Arye Nehorai, Matthew D. Lew

Electrical & Systems Engineering Publications and Presentations

We present a computational method, termed Wasserstein-induced flux (WIF), to robustly quantify the accuracy of individual localizations within a single-molecule localization microscopy (SMLM) dataset without ground- truth knowledge of the sample. WIF relies on the observation that accurate localizations are stable with respect to an arbitrary computational perturbation. Inspired by optimal transport theory, we measure the stability of individual localizations and develop an efficient optimization algorithm to compute WIF. We demonstrate the advantage of WIF in accurately quantifying imaging artifacts in high-density reconstruction of a tubulin network. WIF represents an advance in quantifying systematic errors with unknown and complex distributions, …

Optimization Of Gpu-Accelerated Iterative Ct Reconstruction Algorithm For Clinical Use, Tao Ge

McKelvey School of Engineering Graduate Student Theses & Dissertations

In order to transition the GPU-accelerated CT reconstruction algorithm to a more clinical environment, a graphical user interface is implemented. Some optimization methods on the implementation are presented. We describe the alternating minimization (AM) algorithm as the updating algorithm, and the branchless distance-driven method for the system forward operator. We introduce a version of the Feldkamp-Davis-Kress algorithm to generate the initial image for our alternating minimization algorithm and compare it to a choice of a constant initial image. For the sake of better rate of convergence, we introduce the ordered-subsets method, find the optimal number of ordered subsets, and discuss …

A Robust Statistical Estimation (Rose) Algorithm Jointly Recovers The 3d Location And Intensity Of Single Molecules Accurately And Precisely, Hesam Mazidi, Arye Nehorai, Matthew D. Lew

Electrical & Systems Engineering Publications and Presentations

In single-molecule (SM) super-resolution microscopy, the complexity of a biological structure, high molecular density, and a low signal-to-background ratio (SBR) may lead to imaging artifacts without a robust localization algorithm. Moreover, engineered point spread functions (PSFs) for 3D imaging pose difficulties due to their intricate features. We develop a Robust Statistical Estimation algorithm, called RoSE, that enables joint estimation of the 3D location and photon counts of SMs accurately and precisely using various PSFs under conditions of high molecular density and low SBR.

Double Alternating Minimization (Dam) For Phase Retrieval In The Presence Of Poisson Noise And Pixelation, Weimin Zhou

McKelvey School of Engineering Graduate Student Theses & Dissertations

Optical detectors, such as photodiodes and CMOS cameras, can only read intensity information, and thus phase information of wavefronts is lost. Phase retrieval algorithms are used to estimate the lost phase and reconstruct an accurate effective pupil function, where the squared modulus of its Fourier transform is detected by a camera. However, current algorithms such as the Gerchberg-Saxton algorithm and Fienup-style algorithm do not consider the detector sampling rate and shot noise introduced by photon detection. If the sampling rate is low, we must interpolate the detected image in order to accurately reconstruct its pupil function. Here, we develop an …