Biomedical Commons^™

Hardware-In-The-Loop Evaluation Of Sensor-Source Selection For Prosthetic Locomotion Intent Recognition, Victoria Asencio-Clemens

Master's Theses

Active lower-limb prostheses use intent-recognition systems to identify a user’s locomotion mode and select an appropriate control strategy, but sensor configurations that perform well offline may be unsuitable for resource-constrained embedded hardware. Existing sensor-selection methods generally prioritize classification accuracy without directly accounting for processing latency, memory usage, or other hardware-dependent requirements. To address this limitation, this thesis develops a hardware-in-the-loop source-selection framework for embedded classification of level walking, ramp ascent, ramp descent, stair ascent, and stair descent using multimodal biomechanical data from transtibial amputee participants. Subject-specific linear support vector machine classifiers were evaluated using trial-held-out validation, and candidate configurations from …

Explainable Machine Learning For Biomedical Diagnostics: Optical Imaging And Eeg Signal Analysis, Fozia Rajbdad

LSU Doctoral Dissertations

The growing convenience of complex biomedical data begins new roads for better disease detection and functional identification via artificial intelligence (AI). Nevertheless, conventional analysis methods often rely on basic metrics that drop sensitive biotic differences, and various AI systems are difficult to infer, limiting their clinical reliability and practical use. There is a growing need for explainable, physiologically relevant computational models that can extract key biomarkers from diverse biomedical data sources. This dissertation addresses this problem by obtaining explainable machine learning and deep learning procedures for studying biomedical signals and optical imaging data.

This dissertation is divided into two parts; …

The Neuropsychological Analysis Of The Effect Of Shame And Traumatic Memories In Paranoia: A Network Analysis, Anwesha Maitra

Clinical Psychology Dissertations

Paranoia is increasingly recognized as a multidimensional psychological phenomenon influenced by trauma-related distress, shame, maladaptive interpersonal experiences, and emotional functioning. Although these factors have been extensively associated with paranoia, their relationships with neurocognitive functioning, social cognition, and global functioning remain less well understood. The present study examined these relationships using traditional statistical analyses, network analysis, and machine-learning approaches in a non-clinical sample of 42 adults.

Participants completed self-report measures assessing trauma-related distress, childhood interpersonal experiences, shame, paranoia, depressive symptoms, fear of negative evaluation, self-esteem, and hostile attribution bias, in addition to a comprehensive neurocognitive battery, an emotion recognition task, and …

Practical Multimodal Wearable Sensing For Functional Upper Extremity Primitive Classification With Application To Stroke Rehabilitation, Nicholas Weiss

Master's Theses

Stroke often causes long-term weakness and impaired motor control in the upper extremity (UE), making everyday tasks such as reaching, grasping, and moving objects more difficult. Restoring functional arm use is therefore a central goal of post-stroke rehabilitation. Measuring affected arm use continuously and objectively is important because isolated clinical assessments may not fully capture how the affected arm is used during therapy or daily life. Wearable sensors offer a promising approach for monitoring, but raw sensor signals are difficult to interpret directly. Functional movement primitives address this issue by describing UE behavior as smaller, task-agnostic movement units.

This thesis …

Design And Parametric Testing Of A Transimpedance Amplifier For Low-Power Biomedical Applications, Stanlon Tan, William Chung, Brandon Wu

Electrical Engineering

This project developed and evaluated an optical sensing system for detecting changes associated with glucose concentration. The system combined a laser-diode, cuvette sample holder, photodiode, resistive-feedback transimpedance amplifier, high-resolution analog-to-digital converter, and microcontroller. Parametric testing evaluated the effects of input current and feedback resistance on transimpedance gain, output range, and linearity. Firmware was developed to configure the ADC, average repeated conversions, monitor measurement variation, convert raw digital counts into voltage using a source-meter calibration equation, and compare sample measurements with a water reference. A cuvette enclosure maintained alignment between the laser-diode, sample, and photodiode while reducing external optical interference. Testing …

Dot Product Engine Based Neuromorphic Hardware For Continuous-Time Biomedical Signal Classification, Sanjeev Srinivasan

Master's Theses

Accurate diagnosis of pathological conditions from biomedical signals, such as electrocardiograms (ECGs) is often performed offline, making it time-consuming, costly, and inefficient, especially when abnormal patterns are rare and long-term monitoring generates large amounts of data. To address this, this work proposes a compact, scalable, and programmable neuromorphic system designed for real-time preliminary arrhythmia detection and classification using ECG signals, that can be extended to other biomedical signals. The proposed design processes ECG signals using a delta modulation-based spike encoder, followed by classification with a dot-product engine (DPE) based spiking neural network (SNN) processor and winner-take-all (WTA) circuit. The architecture …

Visualization And Marker-Less Tracking Of User-Defined Pre-Processed Mri Articulator Data Using Deep Learning, Michael De George

Student Theses

This thesis presents a comprehensive framework for the automated tracking and visualization of articulatory movements based on magnetic resonance imaging (MRI) data. A well-known data analysis tool for markerless pose estimation, known as DeepLabCut, is investigated for this purpose. The performance of this tool is enhanced through the design and implementation of a pre-processor. DeepLabCut is a markerless pose estimation toolbox based on deep learning, which overcomes the issue of making manual annotations frame-by-frame. Limitations from manually marking the MRI images are addressed by implementing transfer learning with convolutional neural networks to achieve accurate, user-defined articulator tracking without markers. Current …

Polymer Microstructures For Advanced Biomanufacturing, Tongyao Wu

LSU Doctoral Dissertations

With the continued growth of the biopharmaceutical industry, the demand for scalable, robust, and resource-efficient platforms for large-scale mammalian cell culture is amplified. Recent developments in microfluidic technology, such as precise control of the microenvironment, showed the potential to improve the performance of cell culture systems. However, constrained by scalability and operational efficiency, applying such approaches to large-scale cell culture and biopharmaceutical production presents challenges. This dissertation addresses these challenges through three independent but conceptually related technological developments. First, a roll-to-roll (R2R) fabrication process was developed for the scalable production of hollow microcarriers (HMCs). HMCs provide three-dimensional microenvironments suitable for …

Beyond The Square Pulse: Waveform Shape, Eeg Correlates, And The Pursuit Of Natural Sensation In Tens, Jason Whitson

Honors Undergraduate Theses

This study investigates the relationship between electrical stimulus characteristics of shape and charge on evoked sensations and electroencephalogram (EEG) data during multi-waveform transcutaneous electrical nerve stimulation (TENS) of the median nerve. Neuromodulation methods have traditionally had little control over the location and quality of their associated evoked sensation (e.g., electric, vibration, touch). This experiment utilized five unique stimulus waveforms during TENS stimulation. EEG data were collected concurrently to provide an introductory objective measure of the neural responses underlying these sensory changes. Eleven participants completed three tasks (thresholding, super-threshold stimulation, two-alternative forced choice) using a two-electrode TENS approach. Stimulus waveforms were …

C. Difficile Detection Method For First Responder Glove Application, Alli N. Senedak

Williams Honors College, Honors Research Projects

Clostridioides Difficile (C. diff) is a Anaerobic Gram-positive bacillus that is capable of spore formation, making it difficult to control its spread and duration in clinical environments. This phenomenon can provide danger to first responders, healthcare workers, and patients. The goal of this project is to create a biosensor capable of detecting C. diff in a clinical setting that can be applied to a glove apparatus. The project will involve the use of C. diff aptamers activated on the surface of an electrode. Once surface activation has been verified via surface analysis, the electrodes will be exposed to C. diff …

Design And Development Of Biomimetic Hydrogel Interfaces For Enhanced Bioelectrical Signal Acquisition, Daniela Nikoloska

UNLV Theses, Dissertations, Professional Papers, and Capstones

Every second, human skin processes over one million sensory signals while maintaining properties such as electrical conductivity, mechanical adaptability, and regenerative capability that surpass all synthetic materials. Contemporary bioelectronic devices prove inadequate when contacting skin surfaces due to poor adhesion and electrical contact issues that prevent effective sensing. Despite advancements in wearable and bioelectronic technologies, current devices face major drawbacks when interfacing with human skin, particularly in maintaining firm adhesion, conformability, and low-noise electrical signal acquisition.

This research focuses on the development of a biomimetic hydrogel-based interface for bioelectronic sensing. Specifically, a hybrid hydrogel system composed of polydopamine (PDA)- doped …

Rapid Prototyping Of Low-Cost Sensor Systems Towards A Platform For Upper Limb Posture Estimation, Russell Rathbun

Electrical Engineering and Computer Science Undergraduate Honors Theses

Physical therapy requires patients to perform repeated actions to achieve meaningful results in rehabilitation. This thesis explores production methods and various sensor systems by utilizing rapid prototyping, inertial measurement units (IMUs), and capacitive sensor arrays (CSAs). CSAs can be made from a wide ar- ray of materials and techniques including 3d printing and laser ablation–to rapidly create CSAs that can be custom fit to enable proximity, force, and touch detection. IMU and CSA systems individually are able to track upper limb movements, ges- tures, and positions. This combination of sensors enables accurate upper limb pos- ture estimation of patients. This …

Unmixing In Very High Spatial Resolution Hyperspectral Images, Ana C. Chavez Lopez

Open Access Theses & Dissertations

Hyperspectral Imaging (HSI) captures hundreds of contiguous narrow wavelength bands across the optical region of the electromagnetic spectrum collecting the spectral signature of materials in the field of view of the sensor enabling detailed analysis of each pixel's spectral signature. Satellite or airborne remote sensing systems often capture imagery with low to moderate spatial resolution (LMSR). At these resolutions, the measured spectral signature is a mixture of the signatures of the materials within a single pixel. This mixing of spectral information makes analysis and material identification difficult. Hyperspectral unmixing is an analysis technique that decomposes a pixel's spectrum into constituent …

Capacity, Allocation And Update Dynamics Of Human Memory Systems, Shaoying Wang

Electronic Theses and Dissertations

Information is encoded and stored in three types of memory: sensory memory (SM), short-term memory (STM), and long-term memory (LTM). SM has a large capacity but retains information for only a brief period. When information transfers to STM, only a limited amount can be stored. Information in STM can then be transferred to LTM, which has a much larger capacity and longer retention time. STM is often conceptualized as working memory (WM) to highlight its role in active information processing. Due to the limited capacity of STM, it is commonly believed that STM serves as the bottleneck for information processing. …

Exploring Longitudinal Stability Of Spatiotemporal Sequential Patterns By Means Of Autoencoder Schemes For Eeg Based Personal Identification, Muhammed E. Oztemel

LSU Doctoral Dissertations

Robust personal identification remains a critical and challenging task in the digital era. Electroencephalography (EEG) offers a unique biometric modality that captures individual brain dynamics through complex neural signals. This dissertation proposes autoencoder (AE) based feature extraction and subject identification through these features. EEG recordings are first transformed into topographic maps to represent spatial brain activity. Consecutive topomaps are then concatenated to capture temporal transitions across frames. Convolutional autoencoders (CAEs) are used to learn spatial and temporal patterns, while domain-adaptive AEs are designed to model evoked potential based responses. Additionally, self-attention mechanism is incorporated to enhance feature representation. To analyze …

Functional Biopolymers Applied To Sustainable Technologies In The Environment And Healthcare, Fengjie He

UNLV Theses, Dissertations, Professional Papers, and Capstones

Biodegradable polymeric materials (biopolymers) are naturally derived materials known for their excellent biocompatibility, biodegradability, sustainability, and versatile chemical functionality. They have attracted increasing attention in various applications as alternative to synthetic materials ranging from food packaging to tissue engineering. Meanwhile, with intrinsic advantages, biopolymers have also emerged as promising materials in addressing contemporary challenges in both biomedical and environmental fields. Motivated by the significant potential of biopolymers and the growing need for sustainable materials, my research focuses on the design and engineering of biodegradable polymers with novel modification methods and application directions. In this work, two representative biopolymers are selected: …

Thermal Inkjet Bioprinting Of Human Fibroblasts Into Stem Cell Environment Leads To Stem-Like Gene And Protein Expression And Changes In Hippo Pathway Effectors Yap/Taz, Patricia Ablanedo Morales

Open Access Theses & Dissertations

Thermal inkjet bioprinting (TIB) has emerged as a powerful tool with many potential applications, such as organ regeneration, drug testing, and cell differentiation, among others. Despite the forces and stress that cells are subjected to during the printing process, there is little research that investigates in detail the combined effects of the TIB process and the surrounding environment on cells. Furthermore, a cell's biological environment greatly influences its behavior. Therefore, understanding the effects of bioprinting on cells in a particular environment at a genetic level can provide clues regarding changes in cell characteristics. Bioprinting could potentially be used as a …

Effects Of Environmental Stressors On Human Tissue-On-A-Chip Platforms, Andie Padilla

Open Access Theses & Dissertations

As space exploration begins to extend beyond low earth orbit, it has become increasingly critical to understand the interaction of the extreme environment of space flight with human systems. While it is known that space-travel induces a vast array of complications to cardiac, neural, musculoskeletal, and immune systems, the mechanisms by which these complications occur are poorly understood. Current research to study the effects of microgravity and radiation are limited to ground simulations, which rarely account for the multifactorial stressors experienced during spaceflight, or long duration studies aboard the International Space Station. Similarly, traditional two-dimensional (2D) models lack the ability …

A Deep Learning Approach For Semantic Segmentation And Its Application On Ctc., Samir Farag Harb

Electronic Theses and Dissertations

This dissertation explores the modeling and analysis of medical images, focusing on the intricate task of colon segmentation and subsequent 3D reconstruction, which are critical steps in Computed Tomography Colonography (CTC) systems. The primary objective of this research is to develop precise segmentation approaches to enhance the accuracy of colon identification and reconstruction from abdominal CT scans. Three distinct segmentation approaches are proposed and evaluated: a Markov Random Field (MRF)-based approach, a convolutional neural network (CNN)-based deep learning (DL) approach, and a sequential episodic training with dual contrastive learning Approach (G-SET-DCL) that has a flavor of few-shot learning (FSL). To …

A Parallel Fuzzy Logic Framework For Surgical Skill Evaluation Via Instance Segmentation And Deepsort Tracking, Mohsen M. Mohaidat

Dissertations

Manual evaluation of suturing skills during laparoscopic training is often subjective and labor-intensive, resulting in the lack of scalable and consistent feedback for trainees. This study proposes an automated framework that not only significantly reduces the need for in-person assessment by experts but also ensures scalability, thereby addressing the objectivity and cost-effectiveness limitations. While low-cost laparoscopic box trainers have become increasingly popular for residency training, performance assessment still depends on expert supervision. The proposed system aims to alleviate these limitations.

This study introduces a novel automated framework incorporating an optimized DeepSORT algorithm for classifying, localizing, and tracking surgical tools using …

The Interplay Of Accommodation And Oculomotor Vergence Within Young Adults With Binocularly Normal Vision And Typically-Occurring Convergence Insufficiency, Sebastian Fine

Dissertations

Concerted binocular coordination evoking oculomotor and refractive responses to visual stimuli are essential to daily function. Oculomotor dysfunctions can inhibit binocular responses to visually-near stimuli and have high comorbidities to accommodative dysfunctions. Three visual cues for inward (convergent) and outward (divergent) oculomotor movements, when presented concertedly create natural-viewing conditions: disparity- the binocular difference in light cast onto the fovea due to differing ocular perspectives, blur- the acuity of a visual target which stimulates accommodation, and proximal- the perceived distance of a visual stimuli based on size.

This study aims to quantitatively investigate oculomotor vergence and accommodation performances between individuals with …

Fibrin-Polycaprolactone Scaffolds For The Differentiation Of Human Neural Progenitor Cells Into Dopaminergic Neurons, Salma Paulina Ramirez

Open Access Theses & Dissertations

This project aimed to develop a tissue-on-a-chip platform for studying Parkinson's Disease (PD) using dopaminergic (DA) neurons. PD is a neurodegenerative disorder characterized by progressive loss of DA neurons, leading to involuntary movements and other symptoms. Early diagnosis and deeper understanding of PD pathogenesis are crucial for improving disease management and patient outcomes. To model PD in vitro, this research utilized human-induced pluripotent stem cell (hiPSC)-derived neural progenitor cells (NPCs) cultured on electrospun (ES) polycaprolactone (PCL) scaffolds. Given PCL's hydrophobicity, ECM-based biomaterial coatings, including Cell Basement Membrane (CBM) proteins, Matrigel, and Fibrin, were explored to enhance NPC adhesion, differentiation, and …

Optimizing And Training An Svm-Based Breast Cancer Tumor Classifier, Kevin Lopatka

Master's Theses

With advancements in technology, turning to machine learning has become a popular choice for aiding clinicians in the diagnoses of breast cancer malignancies. While the neural networking approach has been vetted thoroughly, this work aims to take advantage of traditional machine learning techniques; mainly support vector machine learning and the optimizing of feature extraction. The discrete-wavelet transform is used in the feature extraction stage of machine learning. Previous works that use this feature extraction technique are analyzed and expanded upon by utilizing a variety of different wavelets as well as other color-spaces with the goal of achieving higher result metrics …

An Automatic Colorectal Polyps Detection Approach For Ct Colonography., Mohamed Yousuf

Electronic Theses and Dissertations

Colon cancer, also known as colorectal cancer, is a significant health concern, with increasing incidence rates, particularly among individuals under 50. This rise has led experts to recommend the introduction of regular screenings at 45 years of age for adults at average risk. Early detection through such screenings can identify precancerous polyps, allowing their removal before they develop into cancer. This proactive approach has the potential to reduce colorectal cancer deaths by up to 60%. In addition, research indicates that people diagnosed before age 50 have better survival rates, which emphasizes the importance of early diagnosis. Therefore, adhering to recommended …

Toward The Application Of Natural Language Processing In Electronic Health Record Analysis For Taxonomy Development, Latoya Mcdonald

All Dissertations

Electronic health records (EHRs) are pivotal resources for nurse practice because they increase the timeliness and reliability of patient information at the point of care and support access by multiple healthcare providers and the individual patients themselves. However, it is widely recognized that data extraction from EHRs is challenging due to the variability in the language used in clinical care notes and the lack of standardized terminology across healthcare systems. The broad objective of this dissertation is to develop taxonomy-based classification models for nursing care by applying feature engineering approaches to EHRs that include nursing care of ostomy patients following …

Role Of Eye-Tracking Technology And Software Algorithms In Enhancing Adhd Detection And Diagnosis: A Systematic Literature Review, Lauren E. Perkins

Honors College Theses

This systematic literature review explores the role of eye-tracking technology and software algorithms in enhancing the detection and diagnosis of ADHD. ADHD, a neurodevelopmental disorder affecting both children and adults, is traditionally diagnosed through behavioral assessments, which may lack objectivity. Recent studies suggest that eye-tracking, specifically focusing on saccades, fixations, and blink rates, offers the potential for more accurate and objective measures of ADHD. The review examines clinical trials, observational studies, and machine learning research to assess the correlation between ADHD and eye movement patterns. Results indicate that individuals with ADHD exhibit distinct eye movement patterns, which can be quantified …

Deep Learning Applications For Predictive Modeling In Cancer Therapy And Enzyme Encoding, Mengmeng Liu

LSU Doctoral Dissertations

Predictive modeling has revolutionized computational biology and molecular bioinformatics, enabling significant advancements in cancer therapy and functional enzyme characterization. Despite considerable progress, significant challenges remain in accurately predicting combinational cancer therapies and systematically representing enzyme functions for computational applications. Traditional methods struggle with capturing the complex interactions between drugs and biological networks, as well as representing hierarchical relationships within enzyme classifications. This dissertation addresses these limitations by developing advanced deep learning models tailored to enhance predictive performance in both domains.

First, a data augmentation strategy is introduced to improve anticancer drug synergy prediction by generating pharmacologically relevant drug pairs based …

Advancing Electrical Stimulation: Full-Head Mri Segmentation For Abnormal Brain Anatomy With Tdcs, Andrew Birnbaum

Dissertations and Theses

Evaluating the effectiveness of transcranial direct current stimulation (tDCS) is essential for guiding its integration into therapeutic and performance-enhancement applications. In our laboratory, we investigate the efficacy of tDCS across multiple experimental models, including both animal and human studies. I have contributed significantly to the execution and analysis of these experiments, which include studies in rats and healthy human participants aimed at evaluating whether electrical stimulation of the motor cortex can enhance motor learning. These studies assess improvements in fine motor performance resulting from tDCS. In stroke patients, I contribute to our investigation of tDCS as a rehabilitative intervention, particularly …

Medical Ai: Solving Healthcare Challenges And Inspiring Ai Innovation, Xiaowei Yu

Computer Science and Engineering Dissertations - Archive

Artificial Intelligence (AI) is transforming healthcare by enabling large-scale analysis of medical data and integrating multimodal information for more comprehensive diagnostics. I present my work addressing fundamental and challenging problems in developing state-of-the-art AI models for medical data analysis, including multimodal brain data and other medical datasets. Additionally, I design brain-inspired AI models by integrating insights from organizational principles of brain networks. Specifically, my research tackles three critical aspects: (1) AI in Computational Neuroscience, where I design deep learning models for brain network analysis to uncover the organizational principles of brain networks; (2) Brain-Inspired AI, where I integrate superior brain …

Neurovascular Coupling Impairments In Acute Traumatic Brain Injury: An Eeg-Nirs Analysis, Zachary Armstrong

Bioengineering Theses - Archive

Traumatic brain injury (TBI) is a major cause of neurological impairment, often leading to variable recovery and uncertain prognosis in the neurocritical care setting. There is a pressing clinical need for robust, physiologically grounded biomarkers to inform prognosis and therapeutic decision-making in acute TBI. This thesis investigates neurovascular coupling (NVC), the physiological coordination between neuronal activity and cerebral blood flow, as a candidate biomarker for brain function and recovery after injury.

A prospective cohort study was performed using simultaneous electroencephalography (EEG) and near-infrared spectroscopy (NIRS) recordings in patients with moderate-to-severe TBI and healthy controls. Wavelet transform coherence (WTC) analysis was …