Biomedical Commons^™

Image Analysis For Lung Cancer Diagnosis And Superresolution Localization Microscopy, Xia Huang

Open Access Theses & Dissertations

With the development of imaging analysis techniques, flurry of applications associated with it has been hatched. In this paper, image analysis on both organ and cellular levels will be demonstrated. For organ level images, a deep learning based computer aided lung cancer diagnosis based on computer tomography images is studied. Deep learning techniques have been extensively used in computerized pulmonary nodule analysis recent years. Many reported studies still utilized hybrid methods for diagnosis, in which convolutional neural networks (CNNs) are used only as one part of the pipeline, and the whole system still needs either traditional image processing modules or …

Segmentation And Registration Based Automatic Cancer Proton Treatment Analysis, Yang Zhang

Open Access Theses & Dissertations

Due to its low side effects, proton therapy is rapidly developing around the world. However, the time and labor it takes to deliver the treatment have prevented widespread use in the clinic setting. For this reason, an automatic proton treatment analysis system is needed to improve efficiency during the treatment process.

The challenge lies in improving the accuracy and speed of the current proton treatment analysis system. The Range shifter correction factor is considered the same value under any given condition in our treatment system. This approximate algorithm limits the accuracy of the proton treatment analysis system. In addition, medical …

Synthesis, Characterization And Antibacterial Properties Of Silver(I) N-(4-Pyridyl) Benzamide Complexes With Varying Conterions, Mauro J. Ruiz

Open Access Theses & Dissertations

Organic semiconductor materials composed of - stacking aromatic compounds have been under intense investigation for their potential uses in flexible electronics and other advanced technologies. Herein we report a new family of seven - stacking compounds of Silver(I) N-(4-pyridyl) Benzamide with varying counterions, namely [Ag(NPBA)2]X, where NPBA is N-(4-pyridyl) Benzamine, X = NO3- (1), ClO4- (2), CF3SO3- (3), PF6- (4), BF4- (5), CH3PhSO3- (6), and PhSO3- (7), which form extended - stacking networks in one-dimensional (1D), 2D and 3D directions in the crystalline solid-state via the phenyl moiety, with average inter-ring distances of 3.823 Å. Interestingly, the counterions that contain …

Bioprinted Mcf7 Breast Cancer Cells, An In Vitro Model For Drug Discovery, Aleli Campbell

Open Access Theses & Dissertations

Current breast cancer treatments are successful in eradicating this disease in the majority of patients, though there are quite a few cases where relapse or recurrence follow, which may lead to continued cancer therapy or death. Thermal inkjet bioprinting (BP) is a novel technique that is used to bioprint biomaterials or diverse cellular organisms to engineer tissue or organ models in vitro. In this Dissertation, we investigated the molecular effect of BP MCF7 breast cancer cells (BCC), cell survival of the cells when exposed to FDA approved systemic therapy alone and in combination with radiation and lastly, the ability of …

Raman Computational And Experimental Studies On Label-Free Biological Investigations, John Ciubuc

Open Access Theses & Dissertations

Raman spectroscopy is an optical technique that allows for label-free biological investigations to take place. This approach presents both new perspectives and a means for visualizing investigations. This thesis confronts two biological cases: dopamine (DA) detection at physiological levels and assessment of renal osteodystrophy (ROD). We employed surface-enhanced Raman spectroscopy on silver nanoparticles recording DA concentrations as low as 10−11 molar. Quantum chemical density functional calculations were carried out using Gaussian-09 analytical suite software. Good agreement between the simulated and experimentally determined results indicates the existence of distinct DA molecular forms, such as uncharged DA±, anionic DA−, and dopaminequinone. Disappearance …

Formulation Of Nanoparticle Systems For Drug Delivery Application In Biomedical Sciences, Victor Alfredo Rodriguez

Open Access Theses & Dissertations

Antibiotic-resistant strains of bacteria may result in serious infections which are difficult to treat. In addition, the poor antibiotic pipeline has also contributed to the crisis. Recently, the complex of furosemide and silver (Ag-FSE) has been reported as a potential antibacterial agent. However, its poor aqueous solubility is limiting its activity as an effective antibacterial agent. The purpose of this study was to encapsulate Ag-FSE into chitosan nanoparticles (CSNPs) and evaluate antibacterial efficacy. Ag-FSE CSNPs were prepared using ionic gelation technique. The particle size, polydispersity index and zeta potential of Ag-FSE CSNPs were determined using dynamic light scattering (DLS) technique. …

Implementation Of Magnesium Alloy Az91d On Wire And Arc Additive Manufacturing, David Adrian Martinez Holguin

Open Access Theses & Dissertations

As progress on Additive Manufacturing (AM) techniques focusing on ceramics and polymers evolve, metals continue to be a challenging material to manipulate when fabricating products. Current methods, such as Selective Laser Sintering (SLS) and Electron Beam Melting (EBM) face many intrinsic limitations due to the nature of their processes. Material selection, elevated cost and low deposition rates are some of the barriers to consider when one of these methods is to be used for the fabrication of engineering products. The research here presented demonstrates the use of a Wire and Arc Additive Manufacturing (WAAM) system for the creation of metallic …

Redesign Of A Volume Adjustable Transtibial Prosthetic Socket, Samuel Terrazas Quezada

Open Access Theses & Dissertations

Recent research and development in prosthetics have aimed at improving socket designs and components to mimic more efficiently the human body. One such innovation is the Aperture Socket, a low-cost volume adjustable prosthetic socket. During the validation stage of its development, the Aperture Socket successfully demonstrated that it could compensate for volume changes, but various improvements on use and comfort were identified. This project develops and tests a redesign of the Aperture Socket previously developed for amputees in developing countries and subsequently patented and licensed to LIMBS International, Inc.

The first phase of this study was the creation of various …

Optimization Of Collagen Microneedle Using Taguchi Method, Abhilash Aditya

Open Access Theses & Dissertations

Research is conducted to create dissolving collagen microneedles and to optimize the parameters for close to perfect dimension microneedles. A collagen microneedle patch has been developed with a micro-manufacturing process (micro-molding process). The collagen microneedles, varying in length from 300 to 600-μm may reach different targeted layers of the skin depending on the application. As the microneedles penetrate the skin they dissolve, delivering collagen through the epidermis. Such addition of collagen directly to the dermis layers allows it to be absorbed, increasing skin's strength and resilience, since it is one of the natural components of the younger looking skin. This …

Label-Free Raman Imaging To Monitor Breast Tumor Signatures, John Ciubuc

Open Access Theses & Dissertations

Methods built on Raman spectroscopy have shown major potential in describing and discriminating between malignant and benign specimens. Accurate, real-time medical diagnosis benefits in substantial improvements through this vibrational optical method. Not only is acquisition of data possible in milliseconds and analysis in minutes, Raman allows concurrent detection and monitoring of all biological components. Besides validating a significant Raman signature distinction between non-tumorigenic (MCF-10A) and tumorigenic (MCF-7) breast epithelial cells, this study reveals a label-free method to assess overexpression of epidermal growth factor receptors (EGFR) in tumor cells. EGFR overexpression sires Raman features associated with phosphorylated threonine and serine, and …

Production And Functionality Of Melanocytes For Use In 3d-Printed Pigment-Capable Skin Tissue, Corinne Nicole Wittmann

Open Access Theses & Dissertations

Skin grafts are used in a variety of medical procedures including burn treatment, skin cancer removal, chronic wound/ulcer treatment, skin infections and diseases, large wound closure and in elective plastic surgeries. Ideally, skin grafts are harvested directly from the patient. However, in some cases, direct harvesting of skin grafts is not possible. In these situations, an equivalent skin substitute obtained through another source is utilized. There will always be a greater risk of rejection in such cases and therefore is only intended to be a temporary treatment. A possible solution to lessen the risks and issues associated with skin grafts …

Process-Structure-Property Relationship In Magnesium-Based Biodegradable Alloy For Biomedical Applications, Pramanshu Trivedi

Open Access Theses & Dissertations

Magnesium alloys are considered to be the next generation of biomaterials because of their ability to degrade in the physiological environment. We elucidate here the impact of multiaxial forging of Mg-2Zn-2Gd alloy on grain refinement to sub-micron regime and relate the structure to mechanical properties and biological functionality. As-cast and annealed samples were multiaxial forged (MAF) for a total number of two passes with a true strain of ~2/pass. Considering that the microstructure governs the biological response of materials, we studied the constituents of the microstructure in conjunction with the mechanical behavior. The antimicrobial behavior in a Mg-2Zn-2Gd alloy with …

On Demand 3d Printed Hybrid Scaffolds For Tissue Engineering Applications, Ivan D. Hernandez

Open Access Theses & Dissertations

A composite 3D printed polymer scaffold with inbuilt porosity and filled with a hydrogel can provide an ideal support system for cell growth, proliferation, and vascularization. Therefore, a hybrid system of 3D printed polycaprolactone (PCL) scaffold and a hydroxyapatite-based hydrogel was developed for application in the reconstruction of bone defects, which are inherently difficult to repair without any guided therapies. In the present study, a 3D printed gyroid structure of PCL allowed the loading of a higher amount of hydrogel as compared to conventionally used 3D printed mesh structure of the same volume and strut thickness. The hydrogel was composed …

Implementation Of New System For Oxygen Generation And Carbon Dioxide Removal, Angelo Peter Karavolos

Open Access Theses & Dissertations

This research effort develops an integrated system for CO2 removal and O2 production. A unique material, dodeca-tungsto-phosphoric acid (H3PO4W12O3; henceforth referred to as DTPA) is mixed with tetra-ethyl-ortho-silicate Si(OC2H5)4 or TEOS. This mixture exhibits unique properties of heat absorption and high electrical conductivity. In the system described herein, the DTPA resides within a cross linked arrangement of TEOS. The DTPA furnishes a source of O2, while the TEOS furnishes structural support for the large DTPA crystals. In addition, the large amount of H2O within the crystal also adsorbs CO2. It can also be cross-linked with other polymers such as polycarbonate, …

Validation Of An Error Sonification Auditory Feedback Training Program On Proper Sagittal Plane Squat Technique, Rena Hale

Open Access Theses & Dissertations

Osteoarthritis (OA) is one of the most common degenerative joint diseases that hinders an individual's quality of life. A large portion of knee OA instances can be correlated to previous anterior cruciate ligament (ACL) injury. Knee joint injury leading to OA is most prevalent in males aged 20-55 years old and can be caused by improper form during execution of a given task or lack of neuromuscular control. Screening protocols are used to assess deficits of an athlete, with the goal of reducing the risk of injury during both training and in competition. Neuromuscular training programs have been created to …

Stem Cell Induction Via Inkjet-Mediated Gene Transfection, Gilbert Paquian Jr.

Open Access Theses & Dissertations

In 2009 and 2011, it was shown that micropores in the cell membrane that form during inkjet cell printing are a potential vector for gene transfection1,2. These papers showed that porcine aortic endothelial cells and Chinese hamster ovary cells were coprinted with green fluorescent protein-coding (GFP) plasmids onto collagen or gelatin "biopaper" substrates. Printed cells showed a viability of ~90% with transfection efficiencies ranging from 2-30%1,2. Using inkjet-mediated gene transfection (IMGT) to insert a plasmid coding for the Yamanaka stem cell induction factors, it may be possible to offset common drawbacks of the induction process, such as low efficiency, throughput, …

Vascularization In Interconnected 3d Printed Ti-6al-4v Foams With Hydrogel Matrix For Biomedical Bone Replacement Implants, Victor Correa

Open Access Theses & Dissertations

Abstract:

Vascularization or angiogenesis on newly implanted metal orthopedic implants has remained a challenge in the field of tissue engineering. In this research, an interconnected foam structure of Ti-6Al-4V was micro-fabricated by Electron Beam Melting (EBM) technique. The foam in question has a density of 1.77g/cm3 with 60% porosity and a tensile strength of 18GPa. An Extracellular Matrix based hydrogel was added as an aqueous matrix to the foam in question. Hypoxia mimetic stress has been closely related to many wound healing biomedical applications as it increases survival and proliferation molecular signals. To that end, increased expression of Hypoxia-Inducible Factor-1α …

The Viability Of High-Frequency Oscillation Analysis In Eeg Signals For Seizure Prediction, Bryan David Kern

Open Access Theses & Dissertations

Seizure prediction is a decades-old research problem that has yet to reach any satisfying conclusions. Many studies have tackled the problem with varying results, but there has yet to be any major breakthroughs that define the direction of all future research. However, a promising, new predictor may have presented itself in recent years in the form of high frequency oscillations (HFOs). With the discovery of HFOs (80 - 800 Hz) as a biomarker for epilepsy, new interest has been placed in studying the high frequency content of EEGs to find a possible link between epilepsy and HFOs. In this paper, …

Development And Initial Testing Of A Low-Cost, Electronic, Microprocessor-Controlled Prosthetic Knee, Lucas Jonathan Galey

Open Access Theses & Dissertations

Cost-effective lower-limb prostheses have been successful in restoring mobility, independence, and a way of life to millions of global amputees who do not have the means to afford more sophisticated prosthetics. Comprehensively, the current above knee (AK) prosthetic market is segmented into two extremes â?? very affordable relief style knees that offer basic functionality with high risk of accident due to falls, and very expensive styles that offer electronic microprocessor stumble control and adaptive cadence. There remains a gap for a middle-ground system that provides stumble control and greater stability within an achievable price bracket for the developing world. This …

Wettability Of Magnesium Based Alloys, Victor Manuel Ornelas

Open Access Theses & Dissertations

The premise of this project was to determine the wettability behavior of Mg-based alloys using three different liquids. Contact angle measurements were carried out along with utilizing the Zisman method for obtaining values for the critical surface tension. Adhesion energy values were also found through the use of the Young-Dupre equation. This project utilized the Mg-based alloy Mg-2Zn-2Gd with supplemented α-Minimum Essential Medium (MEM), Phosphate Buffer Saline solution (PBS), and distilled water. These three liquids are commonly used in cell cultivation and protein adsorption studies. Supplemented α-MEM consisted of α-MEM, fetal bovine serum, and penicillin-streptomycin. Mg-2Zn-2Gd was used because of …

A Methodology For Physically-Based Contact And Meniscus Properties In Rigid-Body Computational Knee Modeling, Stephen Wilson

Open Access Theses & Dissertations

Determining natural inner knee mechanics is a longstanding goal for researchers with applications to prevention and treatment of knee trauma and osteoarthritis. Physical testing has only provided limited information of knee mechanics due to technical challenges and cost. Modeling has been used for decades to obtain some of this otherwise inaccessible information, and recently finite element analysis (FEA) has become a popular means to this end. However, FEA requires time intensive mesh-creation and has large computational requirements. Ideally, model creation should be easy and simulations should be fast to allow for sensitivity analysis. Although allowing easier model creation and offering …

Design And Development Of Implantable And Remote Controlled Distraction Osteogenesis Device For Limb Lengthening Practice In Children, Mario Eduardo Rodriguez De La O

Open Access Theses & Dissertations

Recent technology improvements have been positively affecting medical industry in recent years since procedures and equipment are more precise and reliable. Nevertheless, there are still surgical procedures and medical devices that not fully address specific needs according to medical experts. One of those necessities is focused on options available for children patients when subjected to a surgical procedure named distraction osteogenesis. In general, distraction osteogenesis is performed when skeletal deformities need to be corrected or when bone lengthening is required, typically a mechanism is utilized to elongate bone at a controlled rate. The existing osteodistraction methods for limb lengthening and …

Use Of Cosine Modulated Filter Bank To Quantify Human Muscle Fatigue Using Electromyography Signals Obtained During Isometric Voluntary Contractions, Liza Stephanie Rodriguez

Open Access Theses & Dissertations

As technology continues to advance, there continues to be an interest in applying engineering theories to solve medical problems. Technology has allowed researchers to investigate the properties and characteristics of the human body in hopes of emulating their complexities. The rising interest in the study of biopotentials for use in prosthetic limbs, exoskeletons and machine interfacing has led to a necessity to validate that the understanding of these signals is accurate. The study of biopotentials generated by muscles via a method known as electromyography (EMG) has improved the understanding of effects of rehabilitative treatments, assisted in diagnosing diseases, control of …

Examining The Role Of Attention In Steering Using A Dual Task Paradigm, Venkata Naga Pradeep Ambati

Open Access Theses & Dissertations

Changing the direction of locomotion, often referred to as "steering", is an integral component of human locomotion. Steering requires maintaining dynamic balance while translating and rotating the body in the new travel direction. Given the level of sensation thought to be involved in sub serving goal directed modifications in steering, it is highly likely that steering control may require attention. Since attention resources decline with increasing age, we may see the influence of age on steering performance when attention resources are limited. Therefore, this study sought to investigate the role of attention in steering using a dual task paradigm in …

Inkjet Bioprinting Of Solid Peroxides For Constructing Oxygen Generating Scaffolds To Improve Cells Viability And Growth Under Hypoxic Environment, Daniel Reyna Soriano

Open Access Theses & Dissertations

Tissue engineering has emerged as an interdisciplinary field to overcome current challenges for tissue repair or replacement in the human body. In essence, it proposes new medical therapies customized to match the biology of specific patients. The potential benefits offered by tissue engineering have driven scientific inquiry to make it a clinical reality.

One of the current challenges in tissue engineering is to provide oxygen supply to thick tissues as oxygen diffusion is limited to 100 - 200 µm layer of viable tissue. Engineered vascular conduits are applied in vitro, providing pre-vascularization to tissues; however, host anastomosis is still a …

Cell Releasing System Using Light Responsive Photovoltaic Devices, Mohammod Khairul Kabir Bhuyan

Open Access Theses & Dissertations

Tissue and organ regeneration via transplantation of cell bodies in-situ has become an emerging strategy in regenerative medicine. Injected or implanted cells must be available in large enough numbers and suitable delivery methods must be found especially when implantation into the affected tissue is not possible. In addition, better understanding of how to mitigate the inflammatory reactions and how to degrade the cell carriers are needed. Current cell-based therapies are limited to injection or implantation of cell suspensions or implantation of cell sheets. Development of alternative systems to obtain cell sheets or other functional cellular structures are required. We are …

Optimized Integrated Software Package For Classification Of Small Airway Dysfunction Using Genetic Algorithms, Elias Estrada

Open Access Theses & Dissertations

Due to the similarity in the symptoms of respiratory disorders, an accurate diagnosis could be a difficult task. Regarding asthma as the main focus of this research, early detection of small airway impairment could represent a better opportunity for timely diagnosis. An integrated software package (ISP) based on the impulse oscillometry technique, has been developed to serve as an important tool for clinicians during classification of asthma severities on children [1]. The current version of the ISP was tested with data obtained during several years by Dr. Homer Nazeran and Dr. Michael Goldman from 110 Hispanic children [2], providing an …

Manufacturing Nerve Guidance Conduits By Stereolithography For Use In Peripheral Nerve Regeneration, Mireya Aidee Perez

Open Access Theses & Dissertations

Nerve regeneration techniques have been studied in great depth in recent years. Peripheral nerve injuries, in particular, can be caused by accidents, falls, athletic injuries, etc. Current methods of repair include direct suturing of the 2 injured nerve ends or the use of autografts, when a nerve section is taken from another area of the body. Both methods have a series of limitations which have led researchers to study alternative methods of repair. Nerve guidance conduits may provide a viable solution because they can be modified and adapted to the patient's needs. Some conduits already exist on the market and …

Inkjet Based Personalized Screening Platform For Cancer Therapy, Jorge Ivan Rodriguez

Open Access Theses & Dissertations

The new paradigm of personalized medicine is beginning to affect clinical practice. In particular, many of the advances in genomics and proteomics have made personalized screening and therapeutic inventions possible. On chip, cellomics approaches to screening and intervention are becoming more commonplace. Cancer therapies may benefit from the rise in `-omics' technologies. In addition, the availability of rapid screening data is crucial to mitigate cancer propagation and increase the possibility of patient recovery. This study is an endeavor to develop a cellomic anticancer drug screening process based on inkjet printing. Previous research has demonstrated that inkjet based screening can reliably …

Printable Biodegradable Hydrogel For Skin Wound Dressing Using Inkjet Printing Technology, Maria G. Yanez

Open Access Theses & Dissertations

Chronic wounds are becoming more frequent. Foot ulcers affect approximately 10% - 15% of patients with diabetes throughout their lifetimes, and by 2025, it is estimated the prevalence of diabetes will be 250 million people in the worldwide. There is increased potential for patients with peripheral neuropathy and peripheral vascular disease to suffer more foot injuries. These conditions reduce the normal pain sensations and healing of minor traumas, allowing the development of chronic non-healing ulcers, often preceding lower-extremity amputation. These types of wounds are very difficult to treat and sometimes take months or even years to heal because of many …