Computer Engineering Commons^™

Queueing Theory Model Of Pentose Phosphate Pathway, Sylwester M. Kloska, Krzysztof Pałczyński, Tomasz Marciniak, Tomasz Talaśka, Marissa Miller, Beata J. Wysocki, Paul H. Davis, Tadeusz A. Wysocki

Department of Electrical and Computer Engineering: Faculty Publications

Due to its role in maintaining the proper functioning of the cell, the pentose phosphate pathway (PPP) is one of the most important metabolic pathways. It is responsible for regulating the concentration of simple sugars and provides precursors for the synthesis of amino acids and nucleotides. In addition, it plays a critical role in maintaining an adequate level of NADPH, which is necessary for the cell to fight oxidative stress. These reasons prompted the authors to develop a computational model, based on queueing theory, capable of simulating changes in PPP metabolites’ concentrations. The model has been validated with empirical data …

A Precise Dispenser Design For Canine Cognition Research, Walker Arce, Jeffrey R. Stevens

Department of Electrical and Computer Engineering: Faculty Publications

Some forms of canine cognition research require a dispenser that can accurately dispense precise quantities of treats. When using off-the-shelf or retrofitted dispensers, there is no guarantee that a precise number of treats will be dispensed. Often, they will over-dispense treats, which may not be acceptable for some tasks. Here we describe a 3D-printed precise treat dispenser with a 59-treat capacity driven by a stepper motor drive and controlled by an integrated Raspberry Pi. The dispenser can be built for less than 200 USD and is fully 3D printable. While off-the-shelf dispensers can result in an error rate of 20–30%, …

Nanomechanical Resonators: Toward Atomic Scale, Bo Xu, Pengcheng Zhang, Jiankai Zhu, Zuheng Liu, Alexander Eichler, Xu-Qian Zheng, Jaesung Lee, Aneesh Dash, Swapnil More, Song Wu, Yanan Yanan, Hao Jia, Akshay Naik, Adrian Bachtold, Rui Yang, Philip X.-L. Feng, Zenghui Wang

Department of Electrical and Computer Engineering: Faculty Publications

The quest for realizing and manipulating ever smaller man-made movable structures and dynamical machines has spurred tremendous endeavors, led to important discoveries, and inspired researchers to venture to new grounds. Scientific feats and technological milestones of miniaturization of mechanical structures have been widely accomplished by advances in machining and sculpturing ever shrinking features out of bulk materials such as silicon. With the flourishing multidisciplinary field of low-dimensional nanomaterials, including one-dimensional (1D) nanowires/nanotubes, and two-dimensional (2D) atomic layers such as graphene/phosphorene, growing interests and sustained efforts have been devoted to creating mechanical devices toward the ultimate limit of miniaturization— genuinely down …

Exploring 3d Data Reuse And Repurposing Through Procedural Modeling, Rachel Opitz, Heather Richards-Rissetto, Karin Dalziel, Jessica Dussault, Greg Tunink

Department of Anthropology: Faculty Publications

Most contemporary 3D data used in archaeological research and heritage management have been created through ‘reality capture,’ the recording of the physical features of extant archaeological objects, structures, and landscapes using technologies such as laser scanning and photogrammetry (Garstki 2020, ch.2; Magnani et al. 2020). A smaller quantity of data are generated by Computer Aided Design (CAD) and Building Information Modeling (BIM) projects, and even fewer data are generated through procedural modeling, the rapid prototyping of multi-component threedimensional (3D) models from a set of rules (Figure 8.1.). It is unsurprising therefore that in archaeology and heritage, efforts around digital 3D …

Data Science Applied To Discover Ancient Minoan-Indus Valley Trade Routes Implied By Commonweight Measures, Peter Revesz

School of Computing: Conference and Workshop Papers

This paper applies data mining of weight measures to discover possible long-distance trade routes among Bronze Age civilizations from the Mediterranean area to India. As a result, a new northern route via the Black Sea is discovered between the Minoan and the Indus Valley civilizations. This discovery enhances the growing set of evidence for a strong and vibrant connection among Bronze Age civilizations.

Serum Protein Signatures Using Aptamer-Based Proteomics For Minimal Change Disease And Membranous Nephropathy, Daniel A. Muruve, Hanna Debiec, Simon T. Dillon, Xuesong Gu, Emmanuelle Plaisier, Handan Can, Hasan H. Otu, Towia A. Libermann, Pierre Ronco

Department of Electrical and Computer Engineering: Faculty Publications

Introduction: Minimal change disease (MCD) and membranous nephropathy (MN) are glomerular diseases (glomerulonephritis [GN]) that present with the nephrotic syndrome. Although circulating PLA2R antibodies have been validated as a biomarker for MN, the diagnosis of MCD and PLA2R-negative MN still relies on the results of kidney biopsy or empirical corticosteroids in children. We aimed to identify serum protein biomarker signatures associated with MCD and MN pathogenesis using aptamer-based proteomics.

Methods: Quantitative SOMAscan proteomics was applied to the serum of adult patients with MCD (n = 15) and MN(n = 37) and healthy controls (n = …

Computational Solutions To Exosomal Microrna Biomarker Detection In Pancreatic Cancer, Thuy T. An

School of Computing: Dissertations, Theses, and Student Research

Pancreatic cancer is the fourth leading cause of cancer death in the United States and the 5-year survival rate is only 5% to 10%. There are only a few non-specific symptoms associated with the early-stage cancer, therefore most patients are diagnosed in a late stage. Due to the lack of effective treatments and the fact that the early stage has a 39% 5-year survival rate, the biggest hope to control this disease is early detection. Therefore, discovery of effective and reliable non-invasive biomarkers for early detection of pancreatic cancer has been a major topic. Very recently, exosomal microRNAs have become …

Semantically Meaningful Sentence Embeddings, Rojina Deuja

School of Computing: Dissertations, Theses, and Student Research

Text embedding is an approach used in Natural Language Processing (NLP) to represent words, phrases, sentences, and documents. It is the process of obtaining numeric representations of text to feed into machine learning models as vectors (arrays of numbers). One of the biggest challenges in text embedding is representing longer text segments like sentences. These representations should capture the meaning of the segment and the semantic relationship between its constituents. Such representations are known as semantically meaningful embeddings. In this thesis, we seek to improve upon the quality of sentence embeddings that capture semantic information.

The current state-of-the-art models are …

Risk-Based Machine Learning Approaches For Probabilistic Transient Stability, Umair Shahzad

Department of Electrical and Computer Engineering: Dissertations, Theses, and Student Research

Power systems are getting more complex than ever and are consequently operating close to their limit of stability. Moreover, with the increasing demand of renewable wind generation, and the requirement to maintain a secure power system, the importance of transient stability cannot be overestimated. Considering its significance in power system security, it is important to propose a different approach for enhancing the transient stability, considering uncertainties. Current deterministic industry practices of transient stability assessment ignore the probabilistic nature of variables (fault type, fault location, fault clearing time, etc.). These approaches typically provide a conservative criterion and can result in expensive …

Comparative Analysis Of Kmer Counting And Estimation Tools, Ankitha Vejandla

School of Computing: Dissertations, Theses, and Student Research

The rapid development of next-generation sequencing (NGS) technologies for determining the sequence of DNA has revolutionized genome research in recent years. De novo assemblers are the most commonly used tools to perform genome assembly. Most of the assemblers use de Bruijn graphs that break the sequenced reads into smaller sequences (sub-strings), called kmers, where k denotes the length of the sub-strings. The kmer counting and analysis of kmer frequency distribution are important in genome assembly. The main goal of this research is to provide a detailed analysis of the performance of different kmer counting and estimation tools that are currently …

Multilayer Lateral Heterostructures Of Van Der Waals Crystals With Sharp, Carrier–Transparent Interfaces, Eli A. Sutter, Raymond R. Unocic, Juan-Carlos Idrobo, Peter Sutter

Department of Electrical and Computer Engineering: Faculty Publications

Research on engineered materials that integrate different 2D crystals has largely focused on two prototypical heterostructures: Vertical van der Waals stacks and lateral heterostructures of covalently stitched monolayers. Extending lateral integration to few layer or even multilayer van der Waals crystals could enable architectures that combine the superior light absorption and photonic properties of thicker crystals with close proximity to interfaces and efficient carrier separation within the layers, potentially benefiting applications such as photovoltaics. Here, the realization of multilayer heterstructures of the van der Waals semiconductors SnS and GeS with lateral interfaces spanning up to several hundred individual layers is …

Cybert: Cybersecurity Claim Classification By Fine-Tuning The Bert Language Model, Kimia Ameri, Michael Hempel, Hamid Sharif, Juan Lopez Jr., Kalyan Perumalla

Department of Electrical and Computer Engineering: Faculty Publications

We introduce CyBERT, a cybersecurity feature claims classifier based on bidirectional encoder representations from transformers and a key component in our semi-automated cybersecurity vetting for industrial control systems (ICS). To train CyBERT, we created a corpus of labeled sequences from ICS device documentation collected across a wide range of vendors and devices. This corpus provides the foundation for fine-tuning BERT’s language model, including a prediction-guided relabeling process. We propose an approach to obtain optimal hyperparameters, including the learning rate, the number of dense layers, and their configuration, to increase the accuracy of our classifier. Fine-tuning all hyperparameters of the resulting …

Use Of Average Mutual Information And Derived Measures To Find Coding Regions, Garin Newcomb, Khalid Sayood

Department of Electrical and Computer Engineering: Faculty Publications

One of the important steps in the annotation of genomes is the identification of regions in the genome which code for proteins. One of the tools used by most annotation approaches is the use of signals extracted from genomic regions that can be used to identify whether the region is a protein coding region. Motivated by the fact that these regions are information bearing structures we propose signals based on measures motivated by the average mutual information for use in this task. We show that these signals can be used to identify coding and noncoding sequences with high accuracy. We …

Near-Field Imaging Of Plasmonic Nanopatch Antennas With Integrated Semiconductor Quantum Dots, Vasudevan Iyer, Yoong Sheng Phang, Andrew Butler, Jiyang Chen, Brian Lerner, Christos Argyropoulos, Thang Hoang, Benjamin Lawrie

Department of Electrical and Computer Engineering: Faculty Publications

Plasmonic nanopatch antennas that incorporate dielectric gaps hundreds of picometers to several nanometers thick have drawn increasing attention over the past decade because they confine electromagnetic fields to grossly sub-diffraction-limited volumes. Substantial control over the optical properties of excitons and color centers confined within these plasmonic cavities has already been demonstrated with far-field optical spectroscopies, but near-field optical spectroscopies are essential for an improved understanding of the plasmon–emitter interaction at the nanoscale. Here, we characterize the intensity and phase-resolved plasmonic response of isolated nanopatch antennas by cathodoluminescence microscopy. Furthermore, we explore the distinction between optical and electron beam spectroscopies of …

Crest Or Trough? How Research Libraries Used Emerging Technologies To Survive The Pandemic, So Far, Scout Calvert

University of Nebraska-Lincoln Libraries: Faculty Publications

Introduction

In the first months of the COVID-19 pandemic, it was impossible to tell if we were at the crest of a wave of new transmissions, or a trough of a much larger wave, still yet to peak. As of this writing, as colleges and universities prepare for mostly in-person fall 2021 semesters, case counts in the United States are increasing again after a decline that coincided with easier access to the COVID vaccine. Plans for a return to campus made with confidence this spring may be in doubt, as we climb the curve of what is already the second …

Hybrid Scenario Generation Method For Stochastic Virtual Bidding In Electricity Market, Dongliang Xiao,, Wei Qiao

Department of Electrical and Computer Engineering: Faculty Publications

Stochastic optimization can be used to generate optimal bidding strategies for virtual bidders in which the uncertain electricity prices are represented by using scenarios. This paper proposes a hybrid scenario generation method for electricity price using a seasonal autoregressive integrated moving average (SARIMA) model and historical data. The electricity price spikes are first identified by using an outlier detection method. Then, the historical data are decomposed into base and spike components. Next, the base and spike component scenarios are generated by using the SARIMA- and historical data-based methods, respectively. Finally, the electricity price scenarios are obtained by combining the base …

Unconventional Van Der Waals Heterostructures Beyond Stacking, Peter Sutter, Eli A. Sutter

Department of Electrical and Computer Engineering: Faculty Publications

Two-dimensional crystals provide exceptional opportunities for integrating dissimilar materials and forming interfaces where distinct properties and phenomena emerge. To date, research has focused on two basic heterostructure types: vertical van der Waals stacks and laterally joined monolayer crystals with in-plane line interfaces. Much more diverse architectures and interface configurations can be realized in the few-layer and multilayer regime, and if mechanical stacking and single-layer growth are replaced by processes taking advantage of self-organization, conversions between polymorphs, phase separation, strain effects, and shaping into the third dimension. Here, we highlight such opportunities for engineering heterostructures, focusing on group IV chalcogenides, a …

Power-Over-Tether Unmanned Aerial System Leveraged For Trajectory Influenced Atmospheric Sensing, Daniel Rico

School of Computing: Dissertations, Theses, and Student Research

The use of unmanned aerial systems (UASs) in agriculture has risen in the past decade and is helping to modernize agriculture. UASs collect and elucidate data previously difficult to obtain and are used to help increase agricultural efficiency and production. Typical commercial off-the-shelf (COTS) UASs are limited by small payloads and short flight times. Such limits inhibit their ability to provide abundant data at multiple spatiotemporal scales. In this thesis, we describe the design and construction of the tethered aircraft unmanned system (TAUS), which is a novel power-over-tether UAS configured for long-term, high throughput atmospheric monitoring with an array of …

A Real-World, Hybrid Event Sequence Generation Framework For Android Apps, Jun Sun

School of Computing: Dissertations, Theses, and Student Research

Generating meaningful inputs for Android apps is still a challenging issue that needs more research. Past research efforts have shown that random test generation is still an effective means to exercise User-Interface (UI) events to achieve high code coverage. At the same time, heuristic search approaches can effectively reach specified code targets. Our investigation shows that these approaches alone are insufficient to generate inputs that can exercise specific code locations in complex Android applications.

This thesis introduces a hybrid approach that combines two different input generation techniques--heuristic search based on genetic algorithm and random instigation of UI events, to reach …

Using Contextual Bandits To Improve Traffic Performance In Edge Network, Aziza Al Zadjali

School of Computing: Dissertations, Theses, and Student Research

Edge computing network is a great candidate to reduce latency and enhance performance of the Internet. The flexibility afforded by Edge computing to handle data creates exciting range of possibilities. However, Edge servers have some limitations since Edge computing process and analyze partial sets of information. It is challenging to allocate computing and network resources rationally to satisfy the requirement of mobile devices under uncertain wireless network, and meet the constraints of datacenter servers too. To combat these issues, this dissertation proposes smart multi armed bandit algorithms that decide the appropriate connection setup for multiple network access technologies on the …

Aerial Flight Paths For Communication, Alisha Bevins

School of Computing: Dissertations, Theses, and Student Research

This body of work presents an iterative process of refinement to understand naive perception of communication using the motion of an unmanned aerial vehicle (UAV). This includes what people believe the UAV is trying to communicate, and how they expect to respond through physical action or emotional response. Previous work in this area sought to communicate without clear definitions of the states attempting to be conveyed. In an attempt to present more concrete states and better understand specific motion perception, this work goes through multiple iterations of state elicitation and label assignment. The lessons learned in this work will be …

Distributed Neural Network Based Architecture For Dddos Detection In Vehicular Communication Systems, Nicholas Jaton

Department of Electrical and Computer Engineering: Dissertations, Theses, and Student Research

With the continued development of modern vehicular communication systems, there is an ever growing need for cutting edge security in these systems. A misbehavior detection systems (MDS) is a tool developed to determine if a vehicle is being attacked so that the vehicle can take steps to mitigate harm from the attacker. Some attacks such as distributed denial of service (DDoS) attacks are a concern for vehicular communication systems. During a DDoS attack, multiple nodes are used to flood the target with an overwhelming amount of communication packets. In this thesis, we investigated the current MDS literature and how it …

An Efficient Multi-Message And Multi-Receiver Signcryption Scheme For Heterogeneous Smart Mobile Iot, Jianying Qiu, Kai Fan, Kuan Zhang, Qiang Pan, Hui Li, Yintang Yang

Department of Electrical and Computer Engineering: Faculty Publications

The Internet of Things (IoT) is developing towards smart and mobile Internet of Things (SM-IoT), which has made great progress. Due to the inherent heterogeneity, distribution, intensive communication, and resource constraints of SM-IoT, efficient security and privacy communication protocols become a particularly critical challenge. Signcryption has received considerable attention. Various signcryption schemes have been proposed to solve secure communication. However, most of them are low in efficiency, without the consideration of characteristics of the SM-IoT. In this paper, we propose a signcryption scheme to achieve efficient secure multi-message and multi-receiver communication for the heterogeneous and distributed SM-IoT. We develop Identity-based …

Modernization Of Scienttific Mathematics Formula In Technology, Iwasan D. Kejawa Ed.D, Prof. Iwasan D. Kejawa Ed.D

Department of Mathematics: Faculty Publications

Abstract
Is it true that we solve problem using techniques in form of formula? Mathematical formulas can be derived through thinking of a problem or situation. Research has shown that we can create formulas by applying theoretical, technical, and applied knowledge. The knowledge derives from brainstorming and actual experience can be represented by formulas. It is intended that this research article is geared by an audience of average knowledge level of solving mathematics and scientific intricacies. This work details an introductory level of simple, at times complex problems in a mathematical epidermis and computability and solvability in a Computer Science. …

Using An Integrative Machine Learning Approach To Study Microrna Regulation Networks In Pancreatic Cancer Progression, Roland Madadjim

School of Computing: Dissertations, Theses, and Student Research

With advances in genomic discovery tools, recent biomedical research has produced a massive amount of genomic data on post-transcriptional regulations related to various transcript factors, microRNAs, lncRNAs, epigenetic modifications, and genetic variations. In this direction, the field of gene regulation network inference is created and aims to understand the interactome regulations between these molecules (e.g., gene-gene, miRNA-gene) that take place to build models able to capture behavioral changes in biological systems. A question of interest arises in integrating such molecules to build a network while treating each specie in its uniqueness. Given the dynamic changes of interactome in chaotic systems …

Teachability And Interpretability In Reinforcement Learning, Jeevan Rajagopal

School of Computing: Dissertations, Theses, and Student Research

There have been many recent advancements in the field of reinforcement learning, starting from the Deep Q Network playing various Atari 2600 games all the way to Google Deempind's Alphastar playing competitively in the game StarCraft. However, as the field challenges more complex environments, the current methods of training models and understanding their decision making become less effective. Currently, the problem is partially dealt with by simply adding more resources, but the need for a better solution remains.

This thesis proposes a reinforcement learning framework where a teacher or entity with domain knowledge of the task to complete can assist …

“The Revolution Will Not Be Supervised": An Investigation Of The Efficacy And Reasoning Process Of Self-Supervised Representations, Atharva Tendle

School of Computing: Dissertations, Theses, and Student Research

Transfer learning technique enables training Deep Learning (DL) models in a data-efficient way for solving computer vision tasks. It involves pretraining a DL model to learn representations from a large and general-purpose source dataset, then fine-tuning the model using the task-specific target dataset. The dominant supervised learning (SL) approach for pretraining representations suffers from some limitations that include expensive labeling and poor generalizability. Recent advancements in the self-supervised learning (SSL) approach made it possible to learn effective representations from unlabeled data. The performance of the fine-tuned DL models based on pretrained SSL representations is on par with the state-of-the-art pretrained …

Spontaneous Formation Of Multilayer Refractory Carbide Coatings In A Molten Salt Media, Loic Constantin, Lisha Fan, Mathilde Pouey, Jérôme Roger, Bai Cui, Jean-François Silvain, Yongfeng Lu

Department of Electrical and Computer Engineering: Faculty Publications

Refractory materials hold great promise to develop functional multilayer coating for extreme environments and temperature applications but require high temperature and complex synthesis to overcome their strong atomic bonding and form a multilayer structure. Here, a spontaneous reaction producing sophisticated multilayer refractory carbide coatings on carbon fiber (CF) is reported. This approach utilizes a relatively low-temperature (950 °C) moltensalt process for forming refractory carbides. The reaction of titanium (Ti), chromium (Cr), and CF yields a complex, high-quality multilayer carbide coating composed of 1) Cr carbide (Cr₃C₂), 2) Ti carbide, and 3) Cr₃C₂ layers. …

Visible-To-Thermal Transfer Learning For Facial Landmark Detection, Domenick D. Poster, Shuowen Hu, Nathan J. Short, Benjamin S. Riggan, Nasser M. Nasrabadi

Department of Electrical and Computer Engineering: Faculty Publications

There has been increasing interest in face recognition in the thermal infrared spectrum. A critical step in this process is face landmark detection. However, landmark detection in the thermal spectrum presents a unique set of challenges compared to in the visible spectrum: inherently lower spatial resolution due to longer wavelength, differences in phenomenology, and limited availability of labeled thermal face imagery for algorithm development and training. Thermal infrared imaging does have the advantage of being able to passively acquire facial heat signatures without the need for active or ambient illumination in low light and nighttime environments. In such scenarios, thermal …

Effective Gamification Within Educational Virtual Reality Environments, Adrian Pilkington

Honors Program: Senior Projects (Public)

With the advent and now widespread use of mobile phones and computers in educational settings, exploring effective and new ways of using technology in the classroom is important for educating the next generation of students. Innovative technology, like Virtual Reality, has started being discussed and researched for its potential benefits in educational settings. This paper presents a brief history of VR, game theory, and examines two VR educational games from the University of Nebraska-Lincoln College of Nursing’s (UNMC) Senior Design teams. The two games will be used to replace lecture-style classes and to go out and educate the community. We …