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Articles 181 - 210 of 1677
Full-Text Articles in Computer Engineering
Rattler Notehub, Emily Medlin
Rattler Notehub, Emily Medlin
Posters - 2025
Students lack diverse and comprehensive study materials that help develop effective learning. More specifically, students at St. Mary’s may find that study material outside of class are not as effective or not relevant to what was taught in class. This leads to prolonged study sessions or completely missing information that was taught when the student was absent. Rattler NoteHub tries to accomplish giving access to students to collaborate, find supplement resources and promote efficient studying.
Rattler NoteHub is a full-stack website that was initially developed as a Software Engineering project. Since then, the website has expanded its functionality to better …
Autonomous Underwater Vehicle Planning Using Hybrid D* Lite With Ppo And Td3: Experimental Design And Performance Analysis, Matthew J. Rice
Autonomous Underwater Vehicle Planning Using Hybrid D* Lite With Ppo And Td3: Experimental Design And Performance Analysis, Matthew J. Rice
Undergraduate Theses
Autonomous Underwater Vehicles (AUVs) face significant challenges in underwater navigation, including generating smooth paths, avoiding obstacles, and adapting to complex conditions. This paper introduces a hybrid path-planning algorithm, D-RL*, that integrates the D* Lite algorithm for efficient initial pathfinding with Deep Reinforcement Learning methods to refine paths for smoother trajectories. The proposed approach addresses D* Lite's inability to produce continuous, smooth paths and baseline Reinforcement Learnings’ failures in environments requiring significant detours. Experimental results in four progressively complex environments highlight D-RL*’s ability to plan smoother paths than D* Lite while training in a shorter amount of time and generating shorter …
Web Application For Simulation Of An Agent-Based Model In Netlogo3d, Chris Davis Perumal, Abraham Nofal, Benedict J. Kolber, Rachael Miller Neilan
Web Application For Simulation Of An Agent-Based Model In Netlogo3d, Chris Davis Perumal, Abraham Nofal, Benedict J. Kolber, Rachael Miller Neilan
Spora: A Journal of Biomathematics
Agent-based models (ABMs) are computer simulation models for studying systems of autonomous agents. Modelers often use specialized software like NetLogo to develop ABMs, but this software poses barriers to researchers in other disciplines with no prior programming experience. To address this issue, we developed a web application that allows users to simulate our ABM via a web browser, eliminating the need for the user to download and use specialized software. While presented in the context of a specific ABM, our approach can be applied to other ABMs to enhance accessibility. The ABM presented here was developed in NetLogo3D. The model …
Generalized Plant Disease Detection Using Residual Networks With Eca And Senet Integration, Asmaa Aly Hagar, Marwa Reda Bastwesy, Reda Elbasiony, Mohamed Talaat Faheem
Generalized Plant Disease Detection Using Residual Networks With Eca And Senet Integration, Asmaa Aly Hagar, Marwa Reda Bastwesy, Reda Elbasiony, Mohamed Talaat Faheem
Journal of Engineering Research
Early and accurate detection of plant leaf diseases is crucial for safeguarding agricultural productivity and ensuring food security. Traditional methods of plant disease detection, which often rely on manual inspections and specialized models, encounter challenges such as limited scalability, data annotation difficulties, and task-spe-cific constraints. This paper introduces two innovative and general-ized approaches for plant disease detection by combining Residual Networks with channel attention modules. The first approach inte-grates ResNet-101, the Efficient Channel Attention (ECA) mecha-nism, and the Squeeze-and-Excitation Network (SENet), while the second combines ResNetRS-101 with the ECA mechanism. These models leverage the strengths of ResNets, the dynamic channel …
A Generalized Plant Disease Detection Technique Based On Residual Network With Efficient Channel Attention, Asmaa Aly Hagar, Marwa Reda Bastwesy, Reda Elbasiony, Mohamed Talaat Saidahmed
A Generalized Plant Disease Detection Technique Based On Residual Network With Efficient Channel Attention, Asmaa Aly Hagar, Marwa Reda Bastwesy, Reda Elbasiony, Mohamed Talaat Saidahmed
Journal of Engineering Research
The detection of plant diseases a vital task for ensuring crop health and optimizing agricultural productivity. Machine learning and computer vision have significantly advanced the automation of plant disease detection. However, traditional methods face several challenges, particularly with data annotation and the limitations of task-specific models, which often fail to generalize across different plant diseases. These methods are hindered by their reliance on models tailored to individual crops and the ongoing need for manual inspections, leading to inefficiencies and restricted scalability. This study proposes a method designed to enable the efficient and accurate identification of a broad range of plant …
Role Of Eye-Tracking Technology And Software Algorithms In Enhancing Adhd Detection And Diagnosis: A Systematic Literature Review, Lauren E. Perkins
Role Of Eye-Tracking Technology And Software Algorithms In Enhancing Adhd Detection And Diagnosis: A Systematic Literature Review, Lauren E. Perkins
Honors College Theses
This systematic literature review explores the role of eye-tracking technology and software algorithms in enhancing the detection and diagnosis of ADHD. ADHD, a neurodevelopmental disorder affecting both children and adults, is traditionally diagnosed through behavioral assessments, which may lack objectivity. Recent studies suggest that eye-tracking, specifically focusing on saccades, fixations, and blink rates, offers the potential for more accurate and objective measures of ADHD. The review examines clinical trials, observational studies, and machine learning research to assess the correlation between ADHD and eye movement patterns. Results indicate that individuals with ADHD exhibit distinct eye movement patterns, which can be quantified …
Design And Realization Of Concurrent Cryptosystem For Medical Image Privacy On Reconfigurable Hardware, Vinoth Raj R
Design And Realization Of Concurrent Cryptosystem For Medical Image Privacy On Reconfigurable Hardware, Vinoth Raj R
Theses and Dissertations
The protection of medical image privacy plays a crucial role in maintaining confidentiality for the secure storage and transmission of patient’s sensitive healthcare data. Medical images are the widely used data type in the e-healthcare sector. Traditional cryptographic algorithms have limitations when applied to large-scale medical image datasets due to their high computational requirements. The primary goal of this research work is to design and implement indigenous algorithms to provide confidentiality for grayscale and color DICOM (Digital Imaging and Communications in Medicine) images through an encryption process. The research leverages the benefits of reconfigurable hardware, namely the Field-Programmable Gate Arrays …
State Of The Grid: Cybersecurity Best Practices For The Utility Industry, Corban Garcia
State Of The Grid: Cybersecurity Best Practices For The Utility Industry, Corban Garcia
SACAD: Scholarly Activities
Developing a strong cybersecurity posture is essential for protecting critical infrastructure, especially in the utility industry. This study analyzes a multi-layered cybersecurity approach that integrates risk management, technology, governance, and workforce training. Based on an examination of industry literature, six key steps were identified. These include assessing security posture, developing policies, implementing security controls, employee training, incident response planning, and regular audits. Each step plays a vital role in mitigating cyber threats and ensuring operational resilience. A comparative analysis of cybersecurity frameworks and real-world incidents highlights the necessity of proactive security strategies. Without these foundational steps, organizations face greater risks …
Harmonicthreads – An Interface That Supports Accessibility In Musical Interaction, Ellie Nguyen, Miyuki Weldon, Franceli L. Cibrian
Harmonicthreads – An Interface That Supports Accessibility In Musical Interaction, Ellie Nguyen, Miyuki Weldon, Franceli L. Cibrian
Engineering Faculty Articles and Research
Traditional musical instruments often can create boundaries due to their cost, training, mobility, and cognitive requirements, making musical expression inaccessible. To address this challenge, we developed HarmonicThreads, a novel pervasive computing interface consisting of a responsive, flexible fabric. HarmonicThreads provides a tactile and auditory experience, allowing users to easily create and control sounds. Using embedded sensors and real-time processing, HarmonicThreads interprets the user's natural movements and interactions to create adaptable musical outputs. This enables context-aware musical interaction, demonstrating the potential of pervasive interfaces in reducing barriers and making musical expression more accessible.
Methods For Detecting Anomalies In Network Traffic Based On One-Class Svm Technology, Komil Kerimov, Sardor Kurbanov, Zarina Azizova
Methods For Detecting Anomalies In Network Traffic Based On One-Class Svm Technology, Komil Kerimov, Sardor Kurbanov, Zarina Azizova
Chemical Technology, Control and Management
This article is dedicated to the research and application of the One-Class Support Vector Machines method for detecting anomalies in network traffic. It examines the problems of detecting anomalies in network traffic and proposes a methodology for using One-Class SVM, including an overview of the main concepts and formulas of the algorithm. A discussion of the results of One-Class SVM is presented, including interpretation, advantages, limitations and possible directions for development of the proposed technique, as well as the practical significance of using the proposed method for detecting anomalies in network traffic.
Two-Key Dependent Permutation (Tkdp) And Its Applications In Information Security, Arulmani K
Two-Key Dependent Permutation (Tkdp) And Its Applications In Information Security, Arulmani K
Theses and Dissertations
Two-Key Dependent Permutation (TKDP) algorithm for generating permutation sequences of fixed sizes, TKDP based Symmetric Block Cipher (TKDPSBC) and TKDP Audio encryption are being proposed in this thesis. TKDP algorithm is capable of generating different sequences for different key pairs. This makes it suitable for constructing dynamic S-boxes and P-boxes that have more degree of randomness and non-linearity to resist cryptanalytic attacks. Rigorous statistical tests validate the efficacy of the generated permutation sequences, affirming their suitability for cryptographic applications in conjunction with Fiestel network-based block ciphers. TKDPSBC encrypts a plaintext block into a ciphertext block of the same size. TKDP …
Machine Learning And Shap Interpretability For Chronic Disease Understanding, Nnaemeka Charles Igwe, Khandaker Mamun Ahmed
Machine Learning And Shap Interpretability For Chronic Disease Understanding, Nnaemeka Charles Igwe, Khandaker Mamun Ahmed
SDSU Data Science Symposium
Non-communicable diseases (NCDs), such as diabetes, are major global health concerns influenced by various health parameters and lifestyle choices. Traditional methods struggle to efficiently predict and manage these conditions due to the complexity and diversity of medical data. There is a need to leverage machine learning algorithms and modern computational tools to accurately predict diabetes, improve diagnosis, and provide actionable insights for better healthcare outcomes. In this project we study the application of machine learning methods for predicting NCDs such as diabetes. Moreover, we leverage hyperparameter tuning techniques for model development and SHapley Additive exPlanation (SHAP) for results interpretations and …
Correlations Between Song Popularity And Their Audio Features Using Machine Learning, Rong Chen
Correlations Between Song Popularity And Their Audio Features Using Machine Learning, Rong Chen
Dissertations, Theses, and Capstone Projects
This project is an interactive visual project that explores the relationship between audio features and song popularity on Spotify using machine learning techniques. Through the collection of nearly half a million songs and implementation of seven different machine learning models, including Linear Regression, Random Forest, Decision Trees, and Gradient Boosting, I investigated how audio characteristics correlate with a song's popularity ranking. The project utilized MongoDB for data storage, Spotipy for API integration, and Streamlit with Plotly for visualization. This work provides insights into the practical challenges of large-scale music analysis and the relationship between technical audio characteristics and commercial success, …
Assessment Of Risk Factor Prediction Using Machine Learning Techniques And Hybrid Approach Based On Soft Sets, Menaga A
Theses and Dissertations
Cardiovascular diseases (CVDs) are the leading cause of mortality worldwide, and India reports a significantly high death rate due to its large population base and the increasing prevalence of non-communicable diseases. National statistics indicate that 20–27% of deaths in India are attributed to CVDs, with the proportion steadily rising over the years. Recognizing the urgency of early detection and risk prevention, the World Health Organization (WHO) introduced “The Global Action Plan for the Prevention and Control of Non-Communicable Diseases (2013–2020),” emphasizing early identification, risk reduction, and timely treatment. In this context, decision-making applications have gained importance across domains especially healthcare …
Cyber Crimes And Mechanisms To Confront Them - The United Arab Emirates As À Model, Aicha Kada Benabdallah, Mohammed Samir Ayad
Cyber Crimes And Mechanisms To Confront Them - The United Arab Emirates As À Model, Aicha Kada Benabdallah, Mohammed Samir Ayad
Journal of Police and Legal Sciences
The technological factor is a double-edged sword; It is a factor of strength for the state as a result of the development it achieves through exploiting modern technologies and information system, and a factor of weakness for it through exploiting modern technology against it to achieve special interests aimed at destabilizing the security and stability of states.
This research paper attempts to shed light on cybercrimes' various forms and characteristics. Today's crimes are different from yesterday's crimes. Considering that it is rapidly spreading and more complex; This is what puts countries in constant search for ways out and …
Feasibility And Acceptability Of The Mazi Umntanakho Digital Tool In South African Settings: A Qualitative Evaluation, Catherine E. Draper, Caylee J. Cook, Elizabeth A. Ankrah, Jesus A. Beltran, Franceli L. Cibrian, Kimberley D. Lakes, Hanna Mofid, Lucretia Williams, Gillian R. Hayes
Feasibility And Acceptability Of The Mazi Umntanakho Digital Tool In South African Settings: A Qualitative Evaluation, Catherine E. Draper, Caylee J. Cook, Elizabeth A. Ankrah, Jesus A. Beltran, Franceli L. Cibrian, Kimberley D. Lakes, Hanna Mofid, Lucretia Williams, Gillian R. Hayes
Engineering Faculty Articles and Research
To address the need for interventions targeting social emotional development and mental health of young children in South Africa, the Mazi Umntanakho (‘know your child’) digital tool was co-designed, and piloted with caregivers and 3–5-year-old children involved in home visiting programmes promoting early childhood development. The aim of this study was to qualitatively evaluate the feasibility and acceptability of this tool in four urban and four rural low-income communities, from the perspective of home visitors and caregivers. Focus groups were conducted with home visitors (n = 117) and caregivers (n = 72). Issues relating to the feasibility of …
Indoor Localization With Ensemble Machine Learning Via Visible Light Communication Channels, Alzahraa M. Ghonim, Wessam M. Salama
Indoor Localization With Ensemble Machine Learning Via Visible Light Communication Channels, Alzahraa M. Ghonim, Wessam M. Salama
Journal of Engineering Research
An indoor localization system based on received signal strength, visible light communication (VLC) and several machine learning approaches is proposed in this paper. Our proposed framework is divided into two strategies. The first one is consisting of gathering our dataset based on MATLAB software to create indoor VLC channel model. While the second phase is depending on training the gained dataset using ensemble machine learning models. Specifically, random forest, decision tree and gradient boosting models. In order to evaluate the robustness of the proposed framework, several evaluation metrics are applied, specifically, training time, testing time, classification accuracy (CA), area under …
Sentiment Analysis For Stock Market Prediction Using Machine Learning Techniques, Rajendiran P
Sentiment Analysis For Stock Market Prediction Using Machine Learning Techniques, Rajendiran P
Theses and Dissertations
Sentiment analysis has become one of the most important procedures to predict the stock market behaviour according to the customer reviews about a particular topic such as news, movie, event, and remarks related to the product. Due to the huge number of reviews generated from the customer, for analyzing information in an accurate manner. In order to detect general view of product, sentiment analysis technique is performed. Lately, the majority of research works is designed for Sentiment analysis by application of an organization and ranking techniques. But it suffers less exactness of the accurate classification of the customer reviews.
The …
Interfaces Gráficas Y Género: Impacto En Discursos Normativos, Marco V. Ferruzca, Paulo C. Portilla, Juan Villegas, Román A. Mora
Interfaces Gráficas Y Género: Impacto En Discursos Normativos, Marco V. Ferruzca, Paulo C. Portilla, Juan Villegas, Román A. Mora
GDI. Revista de investigación de Género, Diseño e Innovación
El diseño de interfaces gráficas de usuario generalmente considera una reflexión sobre propiedades vinculadas a aspectos visuales como el color, las imágenes, la tipografía, etc. Asimismo, algunos aspectos del usuario se ponen también a consideración como su edad, cultura, experiencia, género, entre otros. Sin embargo, la noción de género sólo se reduce a un binarismo para definir si la interfaz gráfica encaja en la categoría mujer u hombre. Muy pocos investigadores se han detenido a profundizar en el discurso heteronormativo que puede desprenderse de la interpretación de significado de una interfaz gráfica como consecuencia de la interrelación entre usuariogénerocomputadora. El …
Event-Based Histogram Of Gradients For Lane Detection, Ganesh Gupta
Event-Based Histogram Of Gradients For Lane Detection, Ganesh Gupta
Computer Science and Engineering Theses - Archive
In the rapidly evolving landscape of autonomous driving technology, lane detection systems stand as fundamental guardians of vehicular safety. The National Highway Traffic Safety Administration identifies unintentional lane departures as responsible for approximately one-third of all road accidents—a sobering statistic that underscores the critical importance of robust lane detection methodologies. This thesis embarks on an academic exploration at the intersection of neuromorphic engineering and computer vision, examining how the distinctive properties of event-based cameras might be harnessed to enhance lane detection capabilities under challenging environmental conditions. Unlike conventional frame-based imaging sensors that capture entire scenes at fixed intervals, event-based cameras …
Exploring Instruction Generation For Uavs: Dataset Adaptation, Model Behavior, And Diagnostic Insights, Seyedarman Vaziri Bozorg
Exploring Instruction Generation For Uavs: Dataset Adaptation, Model Behavior, And Diagnostic Insights, Seyedarman Vaziri Bozorg
Computer Science and Engineering Theses - Archive
This thesis explores the development of an answering agent capable of generating natural language instructions for unmanned aerial vehicles (UAVs), grounded in a limited, real-world dialogue dataset. The objective is to adapt a static dataset into a training pipeline that can support instruction generation and serve as a foundation for future interactive systems involving question-asking agents and internal dialogue. A hybrid architecture is implemented using a semantic teacher model (MPNet) and a T5-base encoder-decoder trained with contrastive and supervised objectives. The adapted training process yields statistically acceptable performance across standard evaluation metrics. However, qualitative analysis reveals a mismatch between metric …
Training Data Privacy In Machine Learning: A Systematization Of Attacks And Defenses, Mohammad Sufyaan Saeed
Training Data Privacy In Machine Learning: A Systematization Of Attacks And Defenses, Mohammad Sufyaan Saeed
Computer Science and Engineering Theses - Archive
Training and deploying Machine Learning (ML) models introduce significant data confidentiality risks, as modern models can inadvertently memorize and leak information about their training data. While attacks such as membership inference and model inversion are well studied, the literature remains fragmented, with inconsistent threat models and unclear relationships across attack classes and defenses. This work presents a Systematization of Knowledge (SoK) that unifies the landscape of training-data privacy attacks and defenses, aligning them with the NIST Adversarial Machine Learning (AML) taxonomy to enable standardized threat modeling and comparison. Our analysis shows that, despite significant progress in characterizing attack vectors, defenses …
Transformer And Recurrent Architectures For Dynamics Prediction And Policy Learning On Long-Horizon Tasks, Vinal Jitendrabhai Gadhiya
Transformer And Recurrent Architectures For Dynamics Prediction And Policy Learning On Long-Horizon Tasks, Vinal Jitendrabhai Gadhiya
Computer Science and Engineering Theses - Archive
Model-based reinforcement learning promises improved sample efficiency by learning environment dynamics and using them for planning or policy improvement. However, the choice of neural architecture for dynamics prediction significantly impacts the model's ability to capture temporal dependencies and maintain long-term context, capabilities crucial for complex, open-world environments.
This thesis investigates three neural architectures for learning world models: Transformer-based, GRU-based, and a hybrid Transformer+GRU approach. We evaluate these architectures on Crafter, a 2D open-world survival environment that requires long-horizon planning and sequential task completion. In Crafter, agents must perform hierarchical sequences of actions, such as collecting wood, placing a table, and …
Multi-Modal Model-Based Optical Flow Estimation For Event-Based Vision, Pritam Karmokar
Multi-Modal Model-Based Optical Flow Estimation For Event-Based Vision, Pritam Karmokar
Computer Science and Engineering Dissertations - Archive
Event cameras offer a fundamentally different sensing paradigm by asynchronously capturing brightness changes at high temporal resolution, directly encoding motion in the scene. However, their sparse and non-traditional data format poses significant challenges for dense motion estimation, particularly in the context of optical flow. Contrast Maximization (CM) has emerged as a powerful model-based framework for estimating optical flow from event data by optimizing the sharpness of motion-compensated event representations. This dissertation builds upon and significantly advances the CM framework through two complementary contributions.
First, we propose Edge-Informed Contrast Maximization (EINCM), a hybrid approach that augments the traditional events-only CM framework …
Deep Neural Network Models For Heatsink Performance Prediction And Optimization In Single Phase Immersion Cooling: Framework For Future Design Tools And Digital Twin Integration, Braxton J. Smith
Mechanical and Aerospace Engineering Theses - Archive
The rapidly rising computational power of modern computing components combined with the advanced packaging techniques being implemented has resulted in exponentially increasing thermal design powers (TDP) from CPUs and GPUs. Traditional air-cooling methods are approaching their effective cooling limits for many of these components, requiring lower supply air temperatures, higher supply air flowrates, and much larger heatsinks to remain feasible. Transitioning from air-cooling to single-phase immersion cooling offers numerous benefits in thermal performance, data-center size reduction, and energy efficiency. To leverage the merits of immersion cooling, the performance of a given heatsink must be predicted and optimized for best performance …
Medical Ai: Solving Healthcare Challenges And Inspiring Ai Innovation, Xiaowei Yu
Medical Ai: Solving Healthcare Challenges And Inspiring Ai Innovation, Xiaowei Yu
Computer Science and Engineering Dissertations - Archive
Artificial Intelligence (AI) is transforming healthcare by enabling large-scale analysis of medical data and integrating multimodal information for more comprehensive diagnostics. I present my work addressing fundamental and challenging problems in developing state-of-the-art AI models for medical data analysis, including multimodal brain data and other medical datasets. Additionally, I design brain-inspired AI models by integrating insights from organizational principles of brain networks. Specifically, my research tackles three critical aspects: (1) AI in Computational Neuroscience, where I design deep learning models for brain network analysis to uncover the organizational principles of brain networks; (2) Brain-Inspired AI, where I integrate superior brain …
Immersive Executive Functions Assessment System (Iexec): Integrating Embodied Cognition And Virtual Reality, Hamza Reza Pavel
Immersive Executive Functions Assessment System (Iexec): Integrating Embodied Cognition And Virtual Reality, Hamza Reza Pavel
Computer Science and Engineering Dissertations - Archive
Executive functions (EFs) are higher-order cognitive processes that include working memory, inhibitory control, and cognitive flexibility. These higher-order processes facilitate the achievement of goal-directed behavior and enable both adaptive decision-making and emotional regulation. Traditional EF assessment tools depend on static pen-and-paper tasks or basic computer-based tasks, which fail to capture real-world cognitive complexity and dynamics. Some of these assessment tools are specifically geared towards children or older adults, while others are more generic and designed to be used for people of all ages. This dissertation addresses these limitations by introducing iExec: The Immersive Executive Functions Assessment System, which functions as …
Enabling Energy And Water Sustainability Through Out-Of-Band Emi Sensing And Infrastructure Modeling, Pranjol Sen Gupta
Enabling Energy And Water Sustainability Through Out-Of-Band Emi Sensing And Infrastructure Modeling, Pranjol Sen Gupta
Computer Science and Engineering Dissertations - Archive
As demand for Internet and cloud services surges, data centers have emerged as critical infrastructure—but they are also among theworld’s most energy- andwater-intensive facilities. Effective power management, particularly at the server level, is essential for improving efficiency, reliability, and sustainability. However, server-level power monitoring remains uncommon due to the high cost of hardware instrumentation and the intrusiveness of software-based solutions, especially in shared colocation environments. My research introduces a novel, low-cost, and non-intrusive method for server-level power monitoring using conducted electromagnetic interference (EMI). By analyzing EMI signals captured from higher levels in the power distribution network, this approach estimates individual …
Identifying Red Sponges On Arms Plates By Preprocessing Images Using Histogram Equalization, Barry Ng
Identifying Red Sponges On Arms Plates By Preprocessing Images Using Histogram Equalization, Barry Ng
Master's Projects
Sponges play a vital role in marine ecosystems, being the only organisms capable of converting dissolved organic matter (DOM) into particulate organic matter (POM). They provide nutrients for coral reefs to thrive in oligotrophic waters. Autonomous reef monitoring structures (ARMS) are used to measure the biodiversity of coral reefs by simulating the complex cavities inside reef structures. Organisms settle on them and scientists can retrieve them after a period of time for analysis. Images are taken of ARMS plates after they are retrieved. Human analysis is unsuitable for the analysis of ARMS plates due to the huge number of images. …
Introducing Catalizer: A Framework For Prototyping Models Of Biological Systems, Andy M. Day
Introducing Catalizer: A Framework For Prototyping Models Of Biological Systems, Andy M. Day
Honors Theses
Modeling the light response system of Nannochloropsis oceanica brings
a set of challenges that make modeling difficult. Notably, potential models
may contain a large number of chemical species. A large number of
species creates a quadratic explosion in the number of potential pathways.
In addition, mathematically defining these pathways is error prone, yet
follows a surprising simple set of rules. We seek to create a domain specific
language which can precisely define these chemical reaction networks.
Once the networks have been defined, they can be exported as procedures
defined in popular programming languages for further analysis.