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University of Nebraska - Lincoln

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Full-Text Articles in Environmental Engineering

Nebraska Water Center Annual Report 2024 Jan 2024

Nebraska Water Center Annual Report 2024

Nebraska Water Center: Administrative Materials

The report's highlights updates including ongoing research, know your well, and the Nebraska master irrigator launch.


Classification Of Sow Postures Using Convolutional Neural Network And Depth Images, Md Towfiqur Rahman, Tami M. Brown-Brandl, Gary A. Rohrer, Sudhendu R. Sharma, Yeyin Shi Jan 2024

Classification Of Sow Postures Using Convolutional Neural Network And Depth Images, Md Towfiqur Rahman, Tami M. Brown-Brandl, Gary A. Rohrer, Sudhendu R. Sharma, Yeyin Shi

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The United States swine industry reports an average preweaning mortality of approximately 16% where approximately 6% of them are attributed to piglets overlayed by sows. Detecting postural transitions and estimating sows’ time budgets for different postures are valuable information for breeders and engineering design of farrowing facilities to eventually reduce piglet death. Computer vision tools can help monitor changes in animal posture accurately and efficiently. To create a more robust system and eliminate varying lighting issues within a day including daytime/ nighttime differences, there is an advantage to using depth cameras over digital cameras. In this study, a computer vision …


Stage And Discharge Prediction From Documentary Time-Lapse Imagery, Kenneth W. Chapman, Troy E. Gilmore, Mehrube Mehrubeoglu, Christian D. Chapman, Aaron R. Mittelstet, John E. Stranzl Jr. Jan 2024

Stage And Discharge Prediction From Documentary Time-Lapse Imagery, Kenneth W. Chapman, Troy E. Gilmore, Mehrube Mehrubeoglu, Christian D. Chapman, Aaron R. Mittelstet, John E. Stranzl Jr.

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Imagery from fixed, ground-based cameras is rich in qualitative and quantitative information that can improve stream discharge monitoring. For instance, time-lapse imagery may be valuable for filling data gaps when sensors fail and/or during lapses in funding for monitoring programs. In this study, we used a large image archive (> 40,000 images from 2012 to 2019) from a fixed, ground-based camera that is part of a documentary watershed imaging project (https://plattebasintimelapse.com/). Scalar image features were extracted from daylight images taken at one-hour intervals. The image features were fused with United States Geological Survey stage and discharge data as …


Life Cycle Greenhouse Gas Emissions In Maize No-Till Agroecosystems In Southern Brazil Based On A Long-Term Experiment, Guilherme Rosa Da Silva, Adam J. Liska, Cimelio Bayer Jan 2024

Life Cycle Greenhouse Gas Emissions In Maize No-Till Agroecosystems In Southern Brazil Based On A Long-Term Experiment, Guilherme Rosa Da Silva, Adam J. Liska, Cimelio Bayer

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Brazilian agriculture is constantly questioned concerning its environmental impacts, particularly greenhouse gas (GHG) emissions. This research study used data from a 34-year field experiment to estimate the life cycle GHG emissions intensity of maize production for grain in farming systems under no-tillage (NT) and conventional tillage (CT) combined with Gramineae (oat) and legume (vetch) cover crops in southern Brazil. We applied the Feedstock Carbon Intensity Calculator for modeling the “field-to-farm gate” emissions with measured annual soil N2O and CH4 emissions data. For net CO2 emissions, increases in soil organic C (SOC) were applied as a proxy, …


Student Use Of Anchors And Metacognitive Strategies In Reflection, Anu Singh, Heidi A. Diefes-Dux Jan 2024

Student Use Of Anchors And Metacognitive Strategies In Reflection, Anu Singh, Heidi A. Diefes-Dux

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Context: Self-regulation, a skillset involving taking charge of one’s own learning processes, is crucial for workplace success. Learners develop self-regulation skills through reflection where they recognize weaknesses and strengths by employing metacognitive strategies: planning, monitoring, and evaluating. Use of anchors assists learners’ engagement in reflection. Purpose or Goal: The purpose of this work was to gain insight into students’ use of anchors when reflecting on their learning. The two research questions: (1) To what extent do students link their self-evaluation and learning objective (LO) self-ratings to their reflections? and (2) What dimensions and level of metacognitive strategies do students use …


Classification Of Sow Postures Using Convolutional Neural Network And Depth Images, Md Towfiqur Rahman, Tami M. Brown-Brandl, Gary A. Rohrer, Sudhendu R. Sharma, Yeyin Shi Jan 2024

Classification Of Sow Postures Using Convolutional Neural Network And Depth Images, Md Towfiqur Rahman, Tami M. Brown-Brandl, Gary A. Rohrer, Sudhendu R. Sharma, Yeyin Shi

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The United States swine industry reports an average preweaning mortality of approximately 16% where approximately 6% of them are attributed to piglets overlayed by sows. Detecting postural transitions and estimating sows’ time budgets for different postures are valuable information for breeders and engineering design of farrowing facilities to eventually reduce piglet death. Computer vision tools can help monitor changes in animal posture accurately and efficiently. To create a more robust system and eliminate varying lighting issues within a day including daytime/ nighttime differences, there is an advantage to using depth cameras over digital cameras. In this study, a computer vision …


Machine Learning-Based Disease Classification In Tomato (Solanum Lycopersicum) Plants = Klasifikasi Penyakit Berbasis Pembelajaran Mesin Pada Tanaman Tomat (Solanum Lycopersicum), Md Towfiqur Rahman, Sudipto Dhar Dipto, Israt Jahan June, Abdul Momin, Muhammad Rashed Al Mamun Jan 2024

Machine Learning-Based Disease Classification In Tomato (Solanum Lycopersicum) Plants = Klasifikasi Penyakit Berbasis Pembelajaran Mesin Pada Tanaman Tomat (Solanum Lycopersicum), Md Towfiqur Rahman, Sudipto Dhar Dipto, Israt Jahan June, Abdul Momin, Muhammad Rashed Al Mamun

Department of Agricultural and Biological Systems Engineering: Faculty Publications

English abstract

In Bangladesh, tomato cultivation faces significant challenges due to its susceptibility to various microorganisms, parasites, and bacterial infections. Typically, the early symptoms of these diseases first appear in roots and leaves, complicating timely detection. This study addresses the challenge of timely and accurate detection of diseases in tomato plants, crucial for effective plant protection management. Conventional manual inspection methods are time-consuming and subjective, resulting in delays in implementing necessary protection measures. Therefore, an image processing technique and machine learning algorithms were used for rapid and robust detection of diseases in tomato plant leaves, aiming to streamline the detection …


A Validation Of Wepp Water Quality Routines In Uniform And Nonuniform Agricultural Hillslopes, Ryan P. Mcgehee, Dennis C. Flanagan, Bernard A. Engel, John E. Gilley Jan 2024

A Validation Of Wepp Water Quality Routines In Uniform And Nonuniform Agricultural Hillslopes, Ryan P. Mcgehee, Dennis C. Flanagan, Bernard A. Engel, John E. Gilley

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Nutrients in agricultural runoff may cause offsite environmental impacts. The objective of this investigation was to examine nutrient transport by overland sheet flow on sites containing swine slurry. Data examined in this study was collected during field rainfall simulation tests conducted on cropland sites in southeast Nebraska, USA. Inflow was added to the top of experimental plots in four successive increments to simulate runoff rates occurring at greater downslope distances. Runoff rates on the experimental sites ranged from 2.3 to 21.2 L min 1 and maximum equivalent downslope distances varied from 5 to 108 m. Phosphorus (P) and nitrogen (N) …


Effects Of Crate Size On Mortality And Postural Behavior In Post-Farrowing Sows, Md Towfiqur Rahman, Tami M. Brown-Brandl, Gary A. Rohrer, Sudhendu R. Sharma, Yeyin Shi Jan 2024

Effects Of Crate Size On Mortality And Postural Behavior In Post-Farrowing Sows, Md Towfiqur Rahman, Tami M. Brown-Brandl, Gary A. Rohrer, Sudhendu R. Sharma, Yeyin Shi

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Preweaning mortality (PWM) is a economic and animal well-being issue for swine producers in the US. On average, producers face about a 16% pre-weaning mortality. A significant portion of this, around 6%, is because sows accidentally overlay their piglets in farrowing crates. The posture behavior of sow plays a vital role in overlaying piglets and this behavior has a significant effect on farrowing crate dimensions. This study aims to explore the interplay between farrowing crate size, mortality rates, and postural behavior in post-farrowing sows. This study employed three farrowing stalls: Traditional (T), Expanded creep area (C), and Expanded sow area …


Red Cabbage Juice-Mediated Gut Microbiota Modulation Improves Intestinal Epithelial Homeostasis And Ameliorates Colitis, Emily Jean Wilson, Nagabhishek Sirpu Natesh, Parsa Ghadermazi, Ramesh Pothuraju, Dipakkumar R. Prajapati, Sanjit Pandey, Jussuf T. Kaifi, John R. Dodam, Jeffrey Bryan, Christian L. Lorson, Aude A. Watrelot, Jason M. Foster, Thomas J. Mansell, Siu Hung Joshua Chan, Surinder K. Batra, Jeyamkondan Subbiah, Satyanarayana Rachagani Dec 2023

Red Cabbage Juice-Mediated Gut Microbiota Modulation Improves Intestinal Epithelial Homeostasis And Ameliorates Colitis, Emily Jean Wilson, Nagabhishek Sirpu Natesh, Parsa Ghadermazi, Ramesh Pothuraju, Dipakkumar R. Prajapati, Sanjit Pandey, Jussuf T. Kaifi, John R. Dodam, Jeffrey Bryan, Christian L. Lorson, Aude A. Watrelot, Jason M. Foster, Thomas J. Mansell, Siu Hung Joshua Chan, Surinder K. Batra, Jeyamkondan Subbiah, Satyanarayana Rachagani

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Gut microbiota plays a crucial role in inflammatory bowel diseases (IBD) and can potentially prevent IBD through microbial-derived metabolites, making it a promising therapeutic avenue. Recent evidence suggests that despite an unclear underlying mechanism, red cabbage juice (RCJ) alleviates Dextran Sodium Sulfate (DSS)-induced colitis in mice. Thus, the study aims to unravel the molecular mechanism by which RCJ modulates the gut microbiota to alleviate DSS-induced colitis in mice. Using C57BL/6J mice, we evaluated RCJ’s protective role in DSS-induced colitis through two cycles of 3% DSS. Mice were daily gavaged with PBS or RCJ until the endpoint, and gut microbiota composition …


Determining The Presence And Size Of Shoulder Lesions In Sows Using Computer Vision, Shubham Bery, Tami M. Brown-Bandl, Bradley T. Jones, Gary A. Rohrer, Sudhendu Raj Sharma Dec 2023

Determining The Presence And Size Of Shoulder Lesions In Sows Using Computer Vision, Shubham Bery, Tami M. Brown-Bandl, Bradley T. Jones, Gary A. Rohrer, Sudhendu Raj Sharma

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Shoulder sores predominantly arise in breeding sows and often result in untimely culling. Reported prevalence rates vary significantly, spanning between 5% and 50% depending upon the type of crate flooring inside a farm, the animal’s body condition, or an existing injury that causes lameness. These lesions represent not only a welfare concern but also have an economic impact due to the labor needed for treatment and medication. The objective of this study was to evaluate the use of computer vision techniques in detecting and determining the size of shoulder lesions. A Microsoft Kinect V2 camera captured the top-down depth and …


Deep Learning Models To Predict Finishing Pig Weight Using Point Clouds, Shiva Paudel, Rafael Vieira De Sousa, Sudhendu Raj Sharma, Tami M. Brown-Bandl Dec 2023

Deep Learning Models To Predict Finishing Pig Weight Using Point Clouds, Shiva Paudel, Rafael Vieira De Sousa, Sudhendu Raj Sharma, Tami M. Brown-Bandl

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The selection of animals to be marketed is largely completed by their visual assessment, solely relying on the skill level of the animal caretaker. Real-time monitoring of the weight of farm animals would provide important information for not only marketing, but also for the assessment of health and well-being issues. The objective of this study was to develop and evaluate a method based on 3D Convolutional Neural Network to predict weight from point clouds. Intel Real Sense D435 stereo depth camera placed at 2.7 m height was used to capture the 3D videos of a single finishing pig freely walking …


Deep Learning Models To Predict Finishing Pig Weight Using Point Clouds, Shiva Paudel, Rafael Vieira De Sousa, Sudhendu Raj Sharma, Tami M. Brown-Bandl Dec 2023

Deep Learning Models To Predict Finishing Pig Weight Using Point Clouds, Shiva Paudel, Rafael Vieira De Sousa, Sudhendu Raj Sharma, Tami M. Brown-Bandl

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The selection of animals to be marketed is largely completed by their visual assessment, solely relying on the skill level of the animal caretaker. Real-time monitoring of the weight of farm animals would provide important information for not only marketing, but also for the assessment of health and well-being issues. The objective of this study was to develop and evaluate a method based on 3D Convolutional Neural Network to predict weight from point clouds. Intel Real Sense D435 stereo depth camera placed at 2.7 m height was used to capture the 3D videos of a single finishing pig freely walking …


Impact Of Irrigation On Vulnerability Of Winter Wheat Under Extreme Climate Change Scenario: A Case Study Of North China Plain, Yulian Gao, Lin Wang, Yaojie Yue Dec 2023

Impact Of Irrigation On Vulnerability Of Winter Wheat Under Extreme Climate Change Scenario: A Case Study Of North China Plain, Yulian Gao, Lin Wang, Yaojie Yue

Department of Agricultural and Biological Systems Engineering: Faculty Publications

An inadequate understanding of the impacts of adaptation countermeasures tends to exaggerate the adverse e􀀀ects of climate change on agricultural systems. Motivated by proposing reasonable climate change adaptation countermeasures, the present study applied the EPIC model to quantify the impacts of climate change and irrigation changes with future socioeconomic development on agricultural production. Winter wheat yield losses using dynamic irrigation parameters in the North China Plain (NCP) from 2010 to 2099 under a scenario coupling climate change and future socioeconomic development (RCP8.5-SSP3), and those under an extreme climate change scenario (RCP8.5), were simulated. Results show that EPIC model demonstrates superior …


Systematic Comparison Of Nonviral Gene Delivery Strategies For Efficient Co-Expression Of Two Transgenes In Human Mesenchymal Stem Cells, Tyler Kozisek, Luke Samuelson, Andrew Hamann, Angela K. Pannier Dec 2023

Systematic Comparison Of Nonviral Gene Delivery Strategies For Efficient Co-Expression Of Two Transgenes In Human Mesenchymal Stem Cells, Tyler Kozisek, Luke Samuelson, Andrew Hamann, Angela K. Pannier

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Background Human mesenchymal stem cells (hMSCs) are being researched for cell-based therapies due to a host of unique properties, however, genetic modification of hMSCs, accomplished through nonviral gene delivery, could greatly advance their therapeutic potential. Furthermore, expression of multiple transgenes in hMSCs could greatly advance their clinical significance for treatment of multifaceted diseases, as individual transgenes could be expressed that target separate pathogenic drivers of complex diseases. Expressing multiple transgenes can be accomplished by delivering multiple DNA vectors encoding for each transgene, or by delivering a single poly-cistronic vector that encodes for each transgene and accomplishes expression through either use …


Co2 Storage Capacity And Injectivity Of Stacked Carbonates Of The Pennsylvanian And Permian In Western Nebraska, Lateef Lawal Dec 2023

Co2 Storage Capacity And Injectivity Of Stacked Carbonates Of The Pennsylvanian And Permian In Western Nebraska, Lateef Lawal

Department of Civil and Environmental Engineering: Dissertations, Theses, and Student Research

Geological carbon storage (GCS) is a critical aspect of carbon capture and storage (CCS) in which captured CO2 from power plants and industrial processes is injected and stored securely underground. Potential subsurface rock formations include saline aquifers, depleted oil and gas reservoirs, unmineable coal seams and volcanic rocks. GCS technology has been proven in the United States and many other parts of the world as a net-zero carbon emission strategy to mitigate the current climate crisis of our planet. Unlike other states such as Wyoming, GCS projects are still in the early phases in Nebraska. The goal of this …


Aicropcam: Deploying Classification, Segmentation, Detection, And Counting Deep-Learning Models For Crop Monitoring On The Edge, Nipuna Chamara, Geng (Frank) Bai, Yufeng Ge Dec 2023

Aicropcam: Deploying Classification, Segmentation, Detection, And Counting Deep-Learning Models For Crop Monitoring On The Edge, Nipuna Chamara, Geng (Frank) Bai, Yufeng Ge

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Precision Agriculture (PA) promises to meet the future demands for food, feed, fiber, and fuel while keeping their production sustainable and environmentally friendly. PA relies heavily on sensing technologies to inform site-specific decision supports for planting, irrigation, fertilization, spraying, and harvesting. Traditional point-based sensors enjoy small data sizes but are limited in their capacity to measure plant and canopy parameters. On the other hand, imaging sensors can be powerful in measuring a wide range of these parameters, especially when coupled with Artificial Intelligence. The challenge, however, is the lack of computing, electric power, and connectivity infrastructure in agricultural fields, preventing …


Determining The Presence And Size Of Shoulder Lesions In Sows Using Computer Vision, Shubham Bery, Tami M. Brown-Brandl, Bradley T. Jones, Gary A. Rohrer, Sudhendu Raj Sharma Dec 2023

Determining The Presence And Size Of Shoulder Lesions In Sows Using Computer Vision, Shubham Bery, Tami M. Brown-Brandl, Bradley T. Jones, Gary A. Rohrer, Sudhendu Raj Sharma

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Shoulder sores predominantly arise in breeding sows and often result in untimely culling. Reported prevalence rates vary significantly, spanning between 5% and 50% depending upon the type of crate flooring inside a farm, the animal’s body condition, or an existing injury that causes lameness. These lesions represent not only a welfare concern but also have an economic impact due to the labor needed for treatment and medication. The objective of this study was to evaluate the use of computer vision techniques in detecting and determining the size of shoulder lesions. A Microsoft Kinect V2 camera captured the top-down depth and …


Environmental Sustainability Of Small Wastewater Treatment Systems And Pathways For Improvement, Matthew James Thompson Nov 2023

Environmental Sustainability Of Small Wastewater Treatment Systems And Pathways For Improvement, Matthew James Thompson

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Wastewater treatment protects society and the environment by reducing pollutants generated from communities prior to discharge into local water bodies. Small water resource recovery facilities (WRRFs) represent the majority of centralized wastewater treatment systems, are resource intensive, and often lack resources needed to evaluate sustainability improvements. The goal of this dissertation was to identify primary sources and drivers of environmental impacts in small WRRFs and exploration of pathways to improve their environmental sustainability.

Case study data collected from small WRRFs in Nebraska was analyzed using environmental life cycle assessment (LCA) to quantify the environmental impact of facilities and existing opportunities. …


A Text Analytics Model For Agricultural Knowledge Discovery And Sustainable Food Production: A Case Study From Oklahoma Panhandle, Ali Bagheri, Saleh Taghvaeian, Dursun Delen Oct 2023

A Text Analytics Model For Agricultural Knowledge Discovery And Sustainable Food Production: A Case Study From Oklahoma Panhandle, Ali Bagheri, Saleh Taghvaeian, Dursun Delen

Department of Agricultural and Biological Systems Engineering: Faculty Publications

With recent increases in the use of social media in agricultural communities, many farmers are showing more and more interest in participating in social media and sharing different aspects of their profession with peers and policymakers. However, researchers have not explored this valuable data source well enough to help improve agribusiness decision-making. This study aims to investigate the potential capability and richness of social media for agricultural knowledge discovery, which can help monitor, detect, and predict critical agricultural events and activities and develop more sustainable food production and agricultural economy. This research utilizes text-mining tools and techniques to collect, process, …


Statistical And Machine Learning Approaches To Describe Factors Affecting Preweaning Mortality Of Piglets, Md Towfiqur Rahman, Tami M. Brown-Brandl, Gary A. Rohrer, Sudhendu R. Sharma, Vamsi Manthena, Yeyin Shi Oct 2023

Statistical And Machine Learning Approaches To Describe Factors Affecting Preweaning Mortality Of Piglets, Md Towfiqur Rahman, Tami M. Brown-Brandl, Gary A. Rohrer, Sudhendu R. Sharma, Vamsi Manthena, Yeyin Shi

Department of Agricultural and Biological Systems Engineering: Faculty Publications

High preweaning mortality (PWM) rates for piglets are a significant concern for the worldwide pork industries, causing economic loss and well-being issues. This study focused on identifying the factors affecting PWM, overlays, and predicting PWM using historical production data with statistical and machine learning models. Data were collected from 1,982 litters from the United States Meat Animal Research Center, Nebraska, over the years 2016 to 2021. Sows were housed in a farrowing building with three rooms, each with 20 farrowing crates, and taken care of by well-trained animal caretakers. A generalized linear model was used to analyze the various sow, …


Statistical And Machine Learning Approaches To Describe Factors Affecting Preweaning Mortality Of Piglets, Md Towfiqur Rahman, Tami M. Brown-Bandl, Gary A. Rohrer, Sudhendu R. Sharma, Vamsi Manthena, Yeyin Shi Oct 2023

Statistical And Machine Learning Approaches To Describe Factors Affecting Preweaning Mortality Of Piglets, Md Towfiqur Rahman, Tami M. Brown-Bandl, Gary A. Rohrer, Sudhendu R. Sharma, Vamsi Manthena, Yeyin Shi

Department of Agricultural and Biological Systems Engineering: Faculty Publications

High preweaning mortality (PWM) rates for piglets are a significant concern for the worldwide pork industries, causing economic loss and well-being issues. This study focused on identifying the factors affecting PWM, overlays, and predicting PWM using historical production data with statistical and machine learning models. Data were collected from 1,982 litters from the U.S. Meat Animal Research Center, Nebraska, over the years 2016 to 2021. Sows were housed in a farrowing building with three rooms, each with 20 farrowing crates, and taken care of by well-trained animal caretakers. A generalized linear model was used to analyze the various sow, litter, …


Statistical And Machine Learning Approaches To Describe Factors Affecting Preweaning Mortality Of Piglets, Md Towfiqur Rahman, Tami M. Brown-Bandl, Gary A. Rohrer, Sudhendu R. Sharma, Vamsi Manthena, Yeyin Shi Oct 2023

Statistical And Machine Learning Approaches To Describe Factors Affecting Preweaning Mortality Of Piglets, Md Towfiqur Rahman, Tami M. Brown-Bandl, Gary A. Rohrer, Sudhendu R. Sharma, Vamsi Manthena, Yeyin Shi

Department of Agricultural and Biological Systems Engineering: Faculty Publications

High preweaning mortality (PWM) rates for piglets are a significant concern for the worldwide pork industries, causing economic loss and well-being issues. This study focused on identifying the factors affecting PWM, overlays, and predicting PWM using historical production data with statistical and machine learning models. Data were collected from 1,982 litters from the U.S. Meat Animal Research Center, Nebraska, over the years 2016 to 2021. Sows were housed in a farrowing building with three rooms, each with 20 farrowing crates, and taken care of by well-trained animal caretakers. A generalized linear model was used to analyze the various sow, litter, …


Upscaling Wetland Methane Emissions From The Fluxnet-Ch4 Eddy Covariance Network (Upch4 V1.0): Model Development, Network Assessment, And Budget Comparison, Gavin Mcnicol, Etienne Fluet-Chouinard, Zutao Ouyang, Sara Knox, Zhen Zhang, Tuula Aalto, Sheel Bansal, Kuang Yu Chang, Min Chen, Kyle Delwiche, Sarah Feron, Mathias Goeckede, Jinxun Liu, Avni Malhotra, Joe R. Melton, William Riley, Rodrigo Vargas, Kunxiaojia Yuan, Qing Ying, Qing Zhu, Pavel Alekseychik, Mika Aurela, David Billesbach, David I. Campbell, Jiquan Chen, Housen Chu, Ankur R. Desai, Eugenie Euskirchen, Jordan Goodrich, Timothy Griffis, Manuel Helbig, Takashi Hirano, Hiroki Iwata, Gerald Jurasinski, John King, Franziska Koebsch, Randall Kolka, Ken Krauss, Annalea Lohila, Ivan Mammarella Oct 2023

Upscaling Wetland Methane Emissions From The Fluxnet-Ch4 Eddy Covariance Network (Upch4 V1.0): Model Development, Network Assessment, And Budget Comparison, Gavin Mcnicol, Etienne Fluet-Chouinard, Zutao Ouyang, Sara Knox, Zhen Zhang, Tuula Aalto, Sheel Bansal, Kuang Yu Chang, Min Chen, Kyle Delwiche, Sarah Feron, Mathias Goeckede, Jinxun Liu, Avni Malhotra, Joe R. Melton, William Riley, Rodrigo Vargas, Kunxiaojia Yuan, Qing Ying, Qing Zhu, Pavel Alekseychik, Mika Aurela, David Billesbach, David I. Campbell, Jiquan Chen, Housen Chu, Ankur R. Desai, Eugenie Euskirchen, Jordan Goodrich, Timothy Griffis, Manuel Helbig, Takashi Hirano, Hiroki Iwata, Gerald Jurasinski, John King, Franziska Koebsch, Randall Kolka, Ken Krauss, Annalea Lohila, Ivan Mammarella

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Wetlands are responsible for 20%–31% of global methane (CH4) emissions and account for a large source of uncertainty in the global CH4 budget. Data-driven upscaling of CH4 fluxes from eddy covariance measurements can provide new and independent bottom-up estimates of wetland CH4 emissions. Here, we develop a six-predictor random forest upscaling model (UpCH4), trained on 119 site-years of eddy covariance CH4 flux data from 43 freshwater wetland sites in the FLUXNET-CH4 Community Product. Network patterns in site-level annual means and mean seasonal cycles of CH4 fluxes were reproduced accurately in tundra, boreal, and temperate regions (Nash-Sutcliffe Efficiency ∼0.52–0.63 and 0.53). …


Resilin Distribution And Abundance In Apis Mellifera Across Biological Age Classes And Castes, Audrey Anderson, Noah Keime, Chandler Fong, Andrew Kraemer, Carol Fassbinder-Orth Sep 2023

Resilin Distribution And Abundance In Apis Mellifera Across Biological Age Classes And Castes, Audrey Anderson, Noah Keime, Chandler Fong, Andrew Kraemer, Carol Fassbinder-Orth

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The presence of resilin, an elastomeric protein, in insect vein joints provides the flexible, passive deformations that are crucial to flapping flight. This study investigated the resilin gene expression and autofluorescence dynamics among Apis mellifera (honey bee) worker age classes and drone honey bees. Resilin gene expression was determined via ddPCR on whole honey bees and resilin autofluorescence was measured in the 1m-cu, 2m-cu, Cu-V, and Cu2-V joints on the forewing and the Cu-V joint of the hindwing. Resilin gene expression varied significantly with age, with resilin activity being highest in the pupae. Autofluorescence of the 1m-cu and the Cu-V …


Influence Of Ultrasound Machine Settings On Quantitative Measures Derived From Spatial Frequency Analysis Of Muscle Tissue, Scott K. Crawford, Stephanie A. Kliethermes, Bryan C. Heiderscheit, Greg Bashford Aug 2023

Influence Of Ultrasound Machine Settings On Quantitative Measures Derived From Spatial Frequency Analysis Of Muscle Tissue, Scott K. Crawford, Stephanie A. Kliethermes, Bryan C. Heiderscheit, Greg Bashford

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Background Ultrasound is a powerful tool for diagnostic purposes and provides insight into both normal and pathologic tissue structure. Spatial frequency analysis (SFA) methods characterize musculoskeletal tissue organization from ultrasound images. Both sonographers in clinical imaging and researchers may alter a minimized range of ultrasound settings to optimize image quality, and it is important to know how these small adjustments of these settings affect SFA parameters. The purpose of this study was to investigate the effects of making small adjustments in a typical default ultrasound machine setting on extracted spatial frequency parameters (peak spatial frequency radius (PSFR), Mmax, Mmax%, and …


Prairie Protector: Student Development Of Systems Thinking Habits In The Context Of Agroecosystems, Erin Ingram, Jennifer Keshwani Aug 2023

Prairie Protector: Student Development Of Systems Thinking Habits In The Context Of Agroecosystems, Erin Ingram, Jennifer Keshwani

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Introduction: The Great Plains ecosystem offers an opportunity for young people to gain knowledge about intricate systems through practical learning. The spread of woody plants into grasslands, known as the “Green Glacier,” poses a risk to biodiversity and animal production. Although effective management strategies exist, some land managers are reluctant to use them. It is critical to cultivate a scientifically literate population that can think systematically and make informed decisions based on STEM principles to address such complex agroecosystem problems.

Methods: In this study, semi-structured focus group discussions with high school students were analyzed to determine whether Prairie …


Assessing The Impact Of Spatial Resolution Of Uas-Based Remote Sensing And Spectral Resolution Of Proximal Sensing On Crop Nitrogen Retrieval Accuracy, Kianoosh Hassani, Hamed Gholizadeh, Saleh Taghvaeian, Victoria Natalie, Jonathan Carpenter, Jamey Jacob Jul 2023

Assessing The Impact Of Spatial Resolution Of Uas-Based Remote Sensing And Spectral Resolution Of Proximal Sensing On Crop Nitrogen Retrieval Accuracy, Kianoosh Hassani, Hamed Gholizadeh, Saleh Taghvaeian, Victoria Natalie, Jonathan Carpenter, Jamey Jacob

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Foliar nitrogen (N) plays a central role in photosynthetic machinery of plants, regulating their growth rates. However, field-based methods for monitoring plant N concentration are costly and limited in their ability to cover large spatial extents. In this study, we had two objectives: (1) assess the capability of unoccupied aerial system (UAS) and non-imaging spectroscopic data in estimating sorghum and corn N concentration and (2) determine the impact of spatial and spectral resolution of reflectance data on estimating sorghum and corn N concentration. We used a UAS and an ASD spectroradiometer to collect canopy- and leaf-level spectral data from sorghum …


Exploring The Determinants Of Organic Matter Bioavailability Through Substrate-Explicit Thermodynamic Modeling, Firnaaz Ahamed, Yaqi You, Amy Burgin, James C. Stegen, Timothy D. Scheibe, Hyun-Seob Song Jul 2023

Exploring The Determinants Of Organic Matter Bioavailability Through Substrate-Explicit Thermodynamic Modeling, Firnaaz Ahamed, Yaqi You, Amy Burgin, James C. Stegen, Timothy D. Scheibe, Hyun-Seob Song

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Microbial decomposition of organic matter (OM) in river corridors is a major driver of nutrient and energy cycles in natural ecosystems. Recent advances in omics technologies enabled high-throughput generation of molecular data that could be used to inform biogeochemical models. With ultrahigh-resolution OM data becoming more readily available, in particular, the substrate-explicit thermodynamic modeling (SXTM) has emerged as a promising approach due to its ability to predict OM degradation and respiration rates from chemical formulae of compounds. This model implicitly assumes that all detected organic compounds are bioavailable, and that aerobic respiration is driven solely by thermodynamics. Despite promising demonstrations …


Maize Nitrogen Uptake, Grain Nitrogen Concentration And Root-Zone Residual Nitrate Nitrogen Response Under Center Pivot, Subsurface Drip And Surface (Furrow) Irrigation, Suat Irmak, Ali T. Mohammed, Matthew Drudik Jun 2023

Maize Nitrogen Uptake, Grain Nitrogen Concentration And Root-Zone Residual Nitrate Nitrogen Response Under Center Pivot, Subsurface Drip And Surface (Furrow) Irrigation, Suat Irmak, Ali T. Mohammed, Matthew Drudik

Department of Agricultural and Biological Systems Engineering: Faculty Publications

While the impact(s) of irrigation and nitrogen (N) levels on crop yields have been investigated separately, research lacks about how different irrigation methods coupled with different N application timing strategies under full and limited irrigation levels effect yield, soil nitrate nitrogen (NO3-N) residual and stover N uptake. Knowledge of these dynamics can help to establish effective water and N management guidelines for the same crop under different irrigation methods and irrigation levels. This research investigated maize (Zea mays L.) residual soil NO3-N concentration and stover and grain N uptake response to water under different irrigation …