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University of Nebraska - Lincoln

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Full-Text Articles in Environmental Engineering

Can Generative Ai Make Farming Decisions? Current Status And Future Pathways: A Case Study In Row Crop Production With Chatgpt, Nipuna Chamara, Yufeng Ge, Joe Luck, Yu Pan, Saleh Taghvaeian, Cory Walters, Christopher Proctor, Daran Rudnick, Daren Redfearn Jun 2026

Can Generative Ai Make Farming Decisions? Current Status And Future Pathways: A Case Study In Row Crop Production With Chatgpt, Nipuna Chamara, Yufeng Ge, Joe Luck, Yu Pan, Saleh Taghvaeian, Cory Walters, Christopher Proctor, Daran Rudnick, Daren Redfearn

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The agricultural decision-making process is experience-based, knowledge-dependent, time-sensitive, complex, and driven by historical data. Planting, fertilization, irrigation, and chemigation are key categories in farm decision-making, and currently there is no one-shot decision-support tool that covers all these activities. Generative Artificial Intelligence (AI) models are more advanced than traditional machine learning and deep learning models. These models have been trained on vast amounts of data from the internet, allowing them to accept unstructured data in various forms and generate human-like text, solutions to problems, and scenario predictions. Given this capability, we became interested in exploring the potential of generative AI in …


Design And Fabrication Of A Scaled Automated Dairy Farm Model: A Report, Md Towfiqur Rahman Jan 2026

Design And Fabrication Of A Scaled Automated Dairy Farm Model: A Report, Md Towfiqur Rahman

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Summary

This study investigates how ventilation systems work in dairy barns and builds a scaled model to support education and research. The project is designed to help students from the University of Nebraska–Lincoln (UNL), K-12 learners, and researchers in animal science, veterinary medicine, and engineering gain visual experience with dairy facility components and processes. Different ventilation methods were studied, leading to the design of a 1/64-scale tunnel-ventilated dairy barn meant for 60 Holstein Friesian cows. Barn dimensions were set based on real Holstein cow measurements to ensure proper cow comfort, while airflow requirements were calculated and scaled down. Miniature fans …


Deep Learning Framework For Sow Posture Classification From Depth Images: Comparison With Data Transformation Techniques, Models, And Cross-Validation, Md Towfiqur Rahman, Tami M. Brown-Brandl, Gary A. Rohrer, Sudhendu R. Sharma, Suzanne M. Leonard, Yeyin Shi Jan 2026

Deep Learning Framework For Sow Posture Classification From Depth Images: Comparison With Data Transformation Techniques, Models, And Cross-Validation, Md Towfiqur Rahman, Tami M. Brown-Brandl, Gary A. Rohrer, Sudhendu R. Sharma, Suzanne M. Leonard, Yeyin Shi

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Piglet preweaning mortality (PWM) in the United States averages ≈14–15%, with sow overlaying causing about one third proportion of these losses. This research aimed to develop and evaluate deep learning models to classify six sow postures using depth images to monitor behaviors linked to overlaying risk. Top-down depth images were captured with Kinect V2® cameras at 10 frames min-1 for five consecutive days (2 days before to 2 days after farrowing), yielding 26,506 training images from 18 sows, 17,901 testing images from 12 sows, and 4,697 additional images from three sows in diagonal stalls for external validation. Three …


Ethical Decision-Making Processes In Authentic Environmental Engineering Contexts Through Systems Thinking And Team Collaboration Lenses: An Embedded Single Case Study, Toluwalase Eniola Brower Dec 2025

Ethical Decision-Making Processes In Authentic Environmental Engineering Contexts Through Systems Thinking And Team Collaboration Lenses: An Embedded Single Case Study, Toluwalase Eniola Brower

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Ethical and professional responsibility is a critical learning outcome emphasized in ABET accreditation. However, ethics instruction in engineering education often lacks integration of system-level considerations such as economic, environmental, and societal contexts, that are essential for developing engineering solutions that ensure the safety and welfare of diverse stakeholders. This embedded single-case study investigated the integration of authentic ethics instruction within a junior-level environmental engineering course at a Midwestern U.S. university during spring 2025 and explores how civil engineering student teams within the course engage in ethical decision-making process during authentic problem-solving.

The instructional intervention consisted of four problem-based ethics modules, …


Legacy Nutrient Transport By Overland Sheet Flow, John E. Gilley, Ryan P. Mcgehee, Kenneth M. Wacha Jul 2025

Legacy Nutrient Transport By Overland Sheet Flow, John E. Gilley, Ryan P. Mcgehee, Kenneth M. Wacha

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The transport of phosphorus (P) and nitrogen (N) from sites containing varying quantities of legacy nutrients was evaluated in this investigation. The data that were examined were collected during four previously reported field hydrologic studies performed in eastern Nebraska. Additional flow was introduced to the top of the rainfall simulation plots to replicate runoff conditions occurring along a hillslope. It was observed that both P and N delivery were influenced by runoff rate on sites where beef cattle manure or inorganic fertilizer had been applied. Legacy nutrient delivery appeared to have been influenced by the quantity of nutrients released at …


Hickory Street Square Revitalization, Spencer Knight, Grace Dungan, Tim Kula, Evan Lauritsen, Lindsey Mennenga May 2025

Hickory Street Square Revitalization, Spencer Knight, Grace Dungan, Tim Kula, Evan Lauritsen, Lindsey Mennenga

Honors Program: Senior Projects (Public)

The Hickory Street Square Revitalization Project seeks to transform a central public space in Sidney, Nebraska into a dynamic, community-oriented area that supports local events, economic activity, and cultural heritage. The project addresses six core objectives: 1) convertible street design, 2) parking lot reconfiguration, 3) public amenities, 4) event flexibility, 5) lighting and signage, and 6) old electric plant renovation. A conceptual design was developed by the design team (S.T.E.E.L. Sentinel Solutions) by synthesizing the most effective features of three preliminary alternatives, shaped further through community feedback and evolving project constraints. The final project design minimizes disruption to existing activity …


Assessment Of Energy Efficiency Measures Recommended For Industrial Facilities: Environmental, Economic, And Life Cycle Perspectives, Dariush Jafari May 2025

Assessment Of Energy Efficiency Measures Recommended For Industrial Facilities: Environmental, Economic, And Life Cycle Perspectives, Dariush Jafari

Department of Civil and Environmental Engineering: Dissertations, Theses, and Student Research

This study assesses the economic, environmental, and life cycle impacts of more than 800 industrial Energy Efficiency Measures (EEMs) identified in manufacturing facilities across Nebraska. These EEMs are notable for their rapid implementation and minimal disruption to the facility’s building structure or core processes.

The research evaluates the financial viability of EEMs by analyzing utility savings, implementation costs, and payback periods. It also examines their cost-effectiveness in reducing greenhouse gas (GHG) emissions, including calculations of net cost and cost of mitigated CO₂-eq.

Key findings indicate that adding insulation to hot pipes and buildings, replacing personal fans with High-Volume, Low-Speed (HVLS) …


Nebraska Water Center Annual Report 2025 Jan 2025

Nebraska Water Center Annual Report 2025

Nebraska Water Center: Administrative Materials

Training Nebraska's future water professionals, research publications, water sciences laboratory impact and know your well curriculums and community impact


Nutrient Transport By Overland Sheet Flow On Sites Containing Swine Slurry, John E. Gilley Jan 2025

Nutrient Transport By Overland Sheet Flow On Sites Containing Swine Slurry, John E. Gilley

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Nutrients in agricultural runoff may cause offsite environmental impacts. The objective of this investigation was to examine nutrient transport by overland sheet flow on sites containing swine slurry. Data examined in this study was collected during field rainfall simulation tests conducted on cropland sites in southeast Nebraska, USA. Inflow was added to the top of experimental plots in four successive increments to simulate runoff rates occurring at greater downslope distances. Runoff rates on the experimental sites ranged from 2.3 to 21.2 L min−1 and maximum equivalent downslope distances varied from 5 to 108 m. Phosphorus (P) and nitrogen (N) …


Transport Of Nutrients By Overland Flow On Sites Containing Beef Cattle Manure, John E. Gilley, Ryan P. Mcgehee, Kenneth M. Wacha Jan 2025

Transport Of Nutrients By Overland Flow On Sites Containing Beef Cattle Manure, John E. Gilley, Ryan P. Mcgehee, Kenneth M. Wacha

Department of Agricultural and Biological Systems Engineering: Faculty Publications

In an inductive metastudy, we investigated the effects of varying rates of overland sheet flow on the transport of phosphorus (P) and nitrogen (N) from sites containing beef cattle manure. The analyzed data were collected during previously reported field rainfall simulation investigations conducted on cropland sites and a beef cattle feedlot in the US state of Nebraska. During the experiments, inflow was incrementally added to the top of the experimental plots to simulate runoff rates occurring at greater downslope distances. Runoff rates on the experimental plots ranged from 2.9 to 22.9 Lmin−1, and the maximum equivalent downslope distances …


Crop2cloud Platform: Real-Time Data Integration For Agricultural Water Monitoring, Bryan Nsoh, Abia Katimbo, Kendall Dejonge, Wei-Zhen Liang, Hongzhi N. Guo, Yufeng Ge, Derek M. Heeren, Yeyin Shi, Xin Qiao, Daran R. Rudnick, Hope Njuki Nakabuye, Birru Girma, Isa Kabenge, Joshua Wanyama Jan 2025

Crop2cloud Platform: Real-Time Data Integration For Agricultural Water Monitoring, Bryan Nsoh, Abia Katimbo, Kendall Dejonge, Wei-Zhen Liang, Hongzhi N. Guo, Yufeng Ge, Derek M. Heeren, Yeyin Shi, Xin Qiao, Daran R. Rudnick, Hope Njuki Nakabuye, Birru Girma, Isa Kabenge, Joshua Wanyama

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Efficient water management is vital for sustainable agriculture, yet integrating real-time data for precise irrigation remains a challenge. This study designed the Crop2Cloud (C2C) platform, a system that leverages advanced sensors using Internet of Things (IoT), edge and cloud computing techniques, and computed Water Stress Indices (WSIs) and machine learning models (i.e., fuzzy logic), to provide scalable and real-time irrigation decisions. The C2C platform aggregates several data including Volumetric Water Content (VWC) from TDR sensors (Acclima Inc., US) installed at four multiple depths, canopy temperatures (Tc) measured by Infrared Radiometers (IRTs) (Apogee Instruments, US), as well as weather information and …


Behavioral Insights Impacting Preweaning Mortality, Md Towfiqur Rahman, G. A. Rohrer, S. R. Sharma, Y. Shi, S. M. Leonard, Tami M. Brown-Bandl Jan 2025

Behavioral Insights Impacting Preweaning Mortality, Md Towfiqur Rahman, G. A. Rohrer, S. R. Sharma, Y. Shi, S. M. Leonard, Tami M. Brown-Bandl

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Conclusions

This study investigated the average time spent on posture behaviors (lying, kneeling, sitting, standing) of sows by analyzing the effects of time segments, farrowing crate types, parity, heat lamp configurations, and mortality groups. Sow posture behaviors were significantly influenced by mortality, parity, crate type, heat lamps, and day category. High mortality sows spent less time lying and more time standing events. Parity 1, 2, 3 sows were more active, spending more time kneeling in transitions, lying, and sitting events. Sows in TSL crate had longer lateral right lying and standing events, while ESCSL crates sows had longer sitting events. …


Firelog: An Open-Source, Low-Cost System For Temperature Logging During Wildland Fires With High Spatial And Temporal Resolution, Nipuna Chamara, Yufeng Ge, Sabrina E. Russo Jan 2025

Firelog: An Open-Source, Low-Cost System For Temperature Logging During Wildland Fires With High Spatial And Temporal Resolution, Nipuna Chamara, Yufeng Ge, Sabrina E. Russo

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Measuring flame, air, and soil temperatures during wildland fires, including wildfires and controlled burns in land management contexts, is crucial for research and applications in fire ecology, safety, and management in a wide array of ecosystems, from grasslands to forests. However, open-source and commercial systems are needed for measuring and logging flame and air temperatures that are user-friendly, economical, modular, and customizable. This paper details the design, development, and validation of the FireLog system. Laboratory validation experiments demonstrated high measurement accuracy, with a minimum coefficient of determination (R2) of 0.98 and the highest observed root mean square error (RMSE) of …


Internet Of Things-Based Automated Solutions Utilizing Machine Learning For Smart And Real-Time Irrigation Management: A Review, Bryan Nsoh, Abia Katimbo, Hongzhi Guo, Derek M. Heeren, Hope Njuki Nakabuye, Xin Qiao, Yufeng Ge, Daran R. Rudnick, Joshua Wanyama, Erion Bwambale, Shafik Kiraga Nov 2024

Internet Of Things-Based Automated Solutions Utilizing Machine Learning For Smart And Real-Time Irrigation Management: A Review, Bryan Nsoh, Abia Katimbo, Hongzhi Guo, Derek M. Heeren, Hope Njuki Nakabuye, Xin Qiao, Yufeng Ge, Daran R. Rudnick, Joshua Wanyama, Erion Bwambale, Shafik Kiraga

Department of Agricultural and Biological Systems Engineering: Faculty Publications

This systematic review critically evaluates the current state and future potential of real-time, end-to-end smart, and automated irrigation management systems, focusing on integrating the Internet of Things (IoTs) and machine learning technologies for enhanced agricultural water use efficiency and crop productivity. In this review, the automation of each component is examined in the irrigation management pipeline from data collection to application while analyzing its effectiveness, efficiency, and integration with various precision agriculture technologies. It also investigates the role of the interoperability, standardization, and cybersecurity of IoT-based automated solutions for irrigation applications. Furthermore, in this review, the existing gaps are identified …


Targeted Weed Management Of Palmer Amaranth Using Robotics And Deep Learning (Yolov7), Amlan Balabantaray, Shaswati Behera, Cheetown Liew, Nipuna Chamara, Mandeep Singh, Amit J. Jhala, Santosh Pitla Sep 2024

Targeted Weed Management Of Palmer Amaranth Using Robotics And Deep Learning (Yolov7), Amlan Balabantaray, Shaswati Behera, Cheetown Liew, Nipuna Chamara, Mandeep Singh, Amit J. Jhala, Santosh Pitla

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Effective weed management is a significant challenge in agronomic crops which necessitates innovative solutions to reduce negative environmental impacts and minimize crop damage. Traditional methods often rely on indiscriminate herbicide application, which lacks precision and sustainability. To address this critical need, this study demonstrated an AI-enabled robotic system, Weeding robot, designed for targeted weed management. Palmer amaranth (Amaranthus palmeri S. Watson) was selected as it is the most troublesome weed in Nebraska. We developed the full stack (vision, hardware, software, robotic platform, and AI model) for precision spraying using YOLOv7, a state-of-the-art object detection deep learning technique. The …


Irrigation Pumping Plants: Energy Consumption And Pumping Plant Performance [Class Handout], Derek M. Heeren, Saleh Taghvaeian, Abia Katimbo, Xin Qiao Sep 2024

Irrigation Pumping Plants: Energy Consumption And Pumping Plant Performance [Class Handout], Derek M. Heeren, Saleh Taghvaeian, Abia Katimbo, Xin Qiao

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Irrigation can be a large contributor to energy consumption on an irrigated farm. It is important to understand factors that impact irrigation energy use and to identify opportunities to reduce energy consumption. This class handout introduces a set of equations for calculating energy consumption for an irrigation pumping plant based on flow conditions and pump efficiency. It also presents typical values for motor performance (including both electric motors and internal combustion engines) in both SI and USCS units. Finally, the handout introduces the concept of a field evaluation of an irrigation pumping plant along with the Nebraska Pumping Plant Performance …


Gsp-Ai: An Ai-Powered Platform For Identifying Key Growth Stages And The Vegetative-To-Reproductive Transition In Wheat Using Trilateral Drone Imagery And Meteorological Data, Liyan Shen, Guohui Ding, Robert Jackson, Mujahid Ali, Shuchen Liu, Arthur Mitchell, Yeyin Shi, Xuqi Lu, Jie Dai, Greg Deakin, Katherine Anna Frels, Haiyan Cen, Yufeng Ge, Ji Zhou Aug 2024

Gsp-Ai: An Ai-Powered Platform For Identifying Key Growth Stages And The Vegetative-To-Reproductive Transition In Wheat Using Trilateral Drone Imagery And Meteorological Data, Liyan Shen, Guohui Ding, Robert Jackson, Mujahid Ali, Shuchen Liu, Arthur Mitchell, Yeyin Shi, Xuqi Lu, Jie Dai, Greg Deakin, Katherine Anna Frels, Haiyan Cen, Yufeng Ge, Ji Zhou

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Wheat (Triticum aestivum) is one of the most important staple crops worldwide. To ensure its global supply, the timing and duration of its growth cycle needs to be closely monitored in the field so that necessary crop management activities can be arranged in a timely manner. Also, breeders and plant researchers need to evaluate growth stages (GSs) for tens of thousands of genotypes at the plot level, at different sites and across multiple seasons. These indicate the importance of providing a reliable and scalable toolkit to address the challenge so that the plot-level assessment of GS can be …


Optimized Gadolinium-Do3a Loading In Raftpolymerized Copolymers For Superior Mr Imaging Of Aging Blood–Brain Barrier, Hunter A. Miller, Aaron Priester, Evan T. Curtis, Krista Hilmas, Ashleigh Abbott, Forrest Kievit, Anthony J. Covertine Jul 2024

Optimized Gadolinium-Do3a Loading In Raftpolymerized Copolymers For Superior Mr Imaging Of Aging Blood–Brain Barrier, Hunter A. Miller, Aaron Priester, Evan T. Curtis, Krista Hilmas, Ashleigh Abbott, Forrest Kievit, Anthony J. Covertine

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The development of gadolinium-based contrast agents (GBCAs) has been pivotal in advancing magnetic resonance imaging (MRI), offering enhanced soft tissue contrast without ionizing radiation exposure. Despite their widespread clinical use, the need for improved GBCAs has led to innovations in ligand chemistry and polymer science. We report a novel approach using methacrylate-functionalized DO3A ligands to synthesize a series of copolymers through direct reversible addition-fragmentation chain transfer (RAFT) polymerization. This technique enables precise control over the gadolinium content within the polymers, circumventing the need for subsequent conjugation and purification steps, and facilitates the addition of other components such as targeting ligands. …


Sensitization Of Europium Oxide Nanoparticles Enhances Signal-To- Noise Over Autofluorescence With Time-Gated Luminescence Detection, Hunter Miller, Jessica Q. Wallace, Hui Li, Xing-Zhong Li, Ana De Bettencourt-Dias, Forrest Kievit Jun 2024

Sensitization Of Europium Oxide Nanoparticles Enhances Signal-To- Noise Over Autofluorescence With Time-Gated Luminescence Detection, Hunter Miller, Jessica Q. Wallace, Hui Li, Xing-Zhong Li, Ana De Bettencourt-Dias, Forrest Kievit

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Clinical translation of nanoparticle-based therapeutics has been limited, and a lack of preclinical delivery characterization is partly to blame, limiting our understanding of the mechanisms of failure. The improvement of the preclinical delivery assessment requires nanoparticles with higher detectability. This work focused on the exploration of several aromatic carboxylic ligands (terephthalic acid, quinaldic acid, and kynurenic acid) for the sensitization of europium oxide nanoparticles with a long emission lifetime to overcome cellular autofluorescence, a key confounder of detection in luminescence-based bioimaging. A facile one-pot synthesis and ligand exchange process generated and sensitized ultrasmall Eu2O3 cores. As reflected …


Fabrication Of A Low-Cost Drum Seeder For Paddy, Muhammad Rashed Al Mamun, Md Rejaul Karim, Md Towfiqur Rahman, Md Janibul Alam Soeb, Md Imranul Alam Jun 2024

Fabrication Of A Low-Cost Drum Seeder For Paddy, Muhammad Rashed Al Mamun, Md Rejaul Karim, Md Towfiqur Rahman, Md Janibul Alam Soeb, Md Imranul Alam

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Rice is a staple food crop. Bangladesh produces it extensively which raised the nation into the fourth-largest rice-grower in the world. Transplanting or direct seeding is a major task in rice cultivation where the manual transplanting method requires a huge labor cost which is beyond control in a peak season. Although mechanical rice transplanters become popularization land preparation and seedling rising as a pre transplanting task is costly and labor-intensive. On the other hand, manual broadcasting and machine seeding direct method still exist due to the above method’s problem. Considering spacing accuracies for intercultural operation, drum seeders are an easy …


Investigating Small Drinking Water System Technical Capacity To Treat For Pfas, Chloe J. Yoder, Kaycie Lane May 2024

Investigating Small Drinking Water System Technical Capacity To Treat For Pfas, Chloe J. Yoder, Kaycie Lane

Department of Civil and Environmental Engineering: Faculty Publications

Per- and polyfluoroalkyl substances (PFAS) presents technical challenges in small systems where advanced drinking water treatment implementation is difficult. Publicly available data were used to examine technical treatment capacity for PFAS in the US, using Nebraska as a pilot. Of 1312 PWSs in Nebraska, 441 have technologies capable of removing PFAS from drinking water. Reverse osmosis was the most common treatment technology in Nebraska with 277 total systems using this technology with, 194 PWSs with RO serving populations of <= 100 people. Fifty-two PWSs had granular activated carbon, 47 had ion exchange and 62 had ultraviolet, with UV being primarily used for disinfection. We found PWSs had different technology deployment methods, several systems had “significant deficiencies” reported in management and operation evaluations, and age and previous water quality violations were not correlated to treatment evaluations. The developed methodology models utilizing publicly available data for contaminants across the US.


Identification Of Compounds That Cause Axonal Dieback Without Cytotoxicity In Dorsal Root Ganglia Explants And Intervertebral Disc Cells With Potential To Treat Pain Via Denervation, Fei San Lee, Uyen N. Nguyen, Eliza J. Munns, Rebecca A. Wachs May 2024

Identification Of Compounds That Cause Axonal Dieback Without Cytotoxicity In Dorsal Root Ganglia Explants And Intervertebral Disc Cells With Potential To Treat Pain Via Denervation, Fei San Lee, Uyen N. Nguyen, Eliza J. Munns, Rebecca A. Wachs

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Low back pain, knee osteoarthritis, and cancer patients suffer from chronic pain. Aberrant nerve growth into intervertebral disc, knee, and tumors, are common pathologies that lead to these chronic pain conditions. Axonal dieback induced by capsaicin (Caps) denervation has been FDA-approved to treat painful neuropathies and knee osteoarthritis but with shortterm efficacy and discomfort. Herein, we propose to evaluate pyridoxine (Pyr), vincristine sulfate (Vcr) and ionomycin (Imy) as axonal dieback compounds for denervation with potential to alleviate pain. Previous literature suggests Pyr, Vcr, and Imy can cause undesired axonal degeneration, but no previous work has evaluated axonal dieback and cytotoxicity …


Determining The Impacts Of Corn Silage Mixing Ratios On Hydrogen Production From Beef Cattle Manure, Katya Faber-Quimby May 2024

Determining The Impacts Of Corn Silage Mixing Ratios On Hydrogen Production From Beef Cattle Manure, Katya Faber-Quimby

Honors Program: Senior Projects (Public)

With global warming becoming an increasingly serious threat and a growing population requiring additional energy resources, interest in the production of clean energy from the agricultural sector has surged in popularity. Biohydrogen, also known as green hydrogen, is H2 that has been produced using renewable energy, such as from agricultural byproducts or waste materials. It presents a promising alternative to nonrenewable resources due to its high potential for energy storage and lack of carbon emissions when used. Cattle manure has been explored as a resource for the production of biohydrogen. Selecting for hydrogen-producing microbes in the manure serves the …


Kinetics-Based Inference Of Environment-Dependent Microbial Interactions And Their Dynamic Variation, Hyun-Seob Song, Na-Rae Lee, Aimee K. Kessell, Hugh C. Mccullough, Seo-Young Park, Kang Zhou, Dong-Yup Lee Apr 2024

Kinetics-Based Inference Of Environment-Dependent Microbial Interactions And Their Dynamic Variation, Hyun-Seob Song, Na-Rae Lee, Aimee K. Kessell, Hugh C. Mccullough, Seo-Young Park, Kang Zhou, Dong-Yup Lee

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Microbial communities in nature are dynamically evolving as member species change their interactions subject to environmental variations. Accounting for such context-dependent dynamic variations in interspecies interactions is critical for predictive ecological modeling. In the absence of generalizable theoretical foundations, we lack a fundamental understanding of how microbial interactions are driven by environmental factors, significantly limiting our capability to predict and engineer community dynamics and function. To address this issue, we propose a novel theoretical framework that allows us to represent interspecies interactions as an explicit function of environmental variables (such as substrate concentrations) by combining growth kinetics and a generalized …


Image Filtering To Improve Maize Tassel Detection Accuracy Using Machine Learning Algorithms, Eric Rodene, Gayara Demini Fernando, Ved Piyush, Yufeng Ge, James C. Schnable, Souparno Ghosh, Jinliang Yang Mar 2024

Image Filtering To Improve Maize Tassel Detection Accuracy Using Machine Learning Algorithms, Eric Rodene, Gayara Demini Fernando, Ved Piyush, Yufeng Ge, James C. Schnable, Souparno Ghosh, Jinliang Yang

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Unmanned aerial vehicle (UAV)-based imagery has become widely used to collect timeseries agronomic data, which are then incorporated into plant breeding programs to enhance crop improvements. To make efficient analysis possible, in this study, by leveraging an aerial photography dataset for a field trial of 233 different inbred lines from the maize diversity panel, we developed machine learning methods for obtaining automated tassel counts at the plot level. We employed both an object-based counting-by-detection (CBD) approach and a density-based counting-by-regression (CBR) approach. Using an image segmentation method that removes most of the pixels not associated with the plant tassels, the …


Composting Reduces The Risks Of Resistome In Beef Cattle Manure At The Transcriptional Level, Yuepeng Sun, Zachery R. Staley, Bryan Woodbury, Jean-Jack Riethoven, Xu Li Mar 2024

Composting Reduces The Risks Of Resistome In Beef Cattle Manure At The Transcriptional Level, Yuepeng Sun, Zachery R. Staley, Bryan Woodbury, Jean-Jack Riethoven, Xu Li

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Transcriptomic evidence is needed to determine whether composting is more effective than conventional stockpiling in mitigating the risk of resistome in livestock manure. The objective of this study is to compare composting and stockpiling for their effectiveness in reducing the risk of antibiotic resistance in beef cattle manure. Samples collected from the center and the surface of full-size manure stockpiling and composting piles were subject to metagenomic and metatranscriptomic analyses. While the distinctions in resistome between stockpiled and composted manure were not evident at the DNA level, the advantages of composting over stockpiling were evident at the transcriptomic level in …


A Systematic Review Of Fourth Industrial Revolution Technologies In Smart Irrigation: Constraints, Opportunities, And Future Prospects For Sub-Saharan Africa, Joshua Wanyama, Erion Bwambale, Shafik Kiraga, Abia Katimbo, Prossie Nakawuka, Isa Kabenge, Isaac Oluk Feb 2024

A Systematic Review Of Fourth Industrial Revolution Technologies In Smart Irrigation: Constraints, Opportunities, And Future Prospects For Sub-Saharan Africa, Joshua Wanyama, Erion Bwambale, Shafik Kiraga, Abia Katimbo, Prossie Nakawuka, Isa Kabenge, Isaac Oluk

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The adoption of Fourth Industrial Revolution (4IR) technologies has revolutionized agricultural practices worldwide. However, their application in the context of sub-Saharan Africa remains a critical challenge. This study presents a systematic review that investigates the potential of 4IR technologies in smart irrigation. Sub- Saharan Africa faces multiple agricultural challenges, exacerbated by climate change, water scarcity, and inefficient irrigation practices. The need for sustainable, water-efficient, and data-driven irrigation systems is urgent to ensure food security and economic development in the region. This study addresses a crucial knowledge gap by assessing the constraints, opportunities, and prospects of implementing 4IR technologies for smart …


Impacts Of Farrowing Pen Design, Season, And Sow Parity On Litter Performance And Piglet Mortality, Verônica Madeira Pacheco, Tami M. Brown-Bandl, Gary A. Rohrer, Rafael Vieira De Sousa, Luciane Silva Martello Jan 2024

Impacts Of Farrowing Pen Design, Season, And Sow Parity On Litter Performance And Piglet Mortality, Verônica Madeira Pacheco, Tami M. Brown-Bandl, Gary A. Rohrer, Rafael Vieira De Sousa, Luciane Silva Martello

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Piglet mortality during lactation is a significant concern in swine production, influenced by complex interactions involving sow, piglet, environmental, and management factors. While crushing by the sow may be the ultimate cause of piglet mortality, there are many factors influencing the outcome, including parity, thermal stress, and animal housing systems. New farrowing systems are continuously being developed; however, it is difficult for producers to make decisions without any scientific basis. This study aimed to assess the impact of different farrowing pen layouts on piglet performance, considering parity and season. A total of 546 sows and 9123 piglets were monitored across …


Enhancing Estimation Of Cover Crop Biomass Using Field-Based High-Throughput Phenotyping And Machine Learning Models, Geng Bai, Katja Koehler-Cole, David Scoby, Vesh R. Thapa, Andrea D. Basche, Yufeng Ge Jan 2024

Enhancing Estimation Of Cover Crop Biomass Using Field-Based High-Throughput Phenotyping And Machine Learning Models, Geng Bai, Katja Koehler-Cole, David Scoby, Vesh R. Thapa, Andrea D. Basche, Yufeng Ge

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Incorporating cover crops into cropping systems offers numerous potential benefits, including the reduction of soil erosion, suppression of weeds, decreased nitrogen requirements for subsequent crops, and increased carbon sequestration. The aboveground biomass (AGB) of cover crops strongly influences their performance in delivering these benefits. Despite the significance of AGB, a comprehensive field-based high-throughput phenotyping study to quantify AGB of multiple cover crops in the U.S. Midwest has not been found. This study presents a two-year field experiment carried out in Eastern Nebraska, USA, to estimate AGB of five different cover crop species [canola (Brassica napus L.), rye (Secale …


Converting Mass And Energy Balance Chemical Engineering Concepts Into Fundamentals Of Environmental Engineering (Enve 210), Kaycie Lane Jan 2024

Converting Mass And Energy Balance Chemical Engineering Concepts Into Fundamentals Of Environmental Engineering (Enve 210), Kaycie Lane

UNL Faculty Course Portfolios

This evaluation of teaching examined the Fall 2023 semester of ENVE 210: Fundamentals of Environmental Engineering. The purpose of this study was to change the format of the class from a lecture-based to a flipped classroom approach through the use of pre-lectures, in-class problem sets and group work activities. In addition, this study aimed to better adapt chemical engineering textbook content related to mass and energy balances to environmental engineering by creating new environmental engineering specific and sustainable development problems. The study learning outcomes proved difficult to implement and evaluate in a hybrid distance learning class and will require future …