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Articles 121 - 150 of 332

Full-Text Articles in Chemical Engineering

Using Thermally Coupled Reactive Distillation Columns In Biodiesel Production, Nghi Nguyen, Yaşar Demirel Jan 2011

Using Thermally Coupled Reactive Distillation Columns In Biodiesel Production, Nghi Nguyen, Yaşar Demirel

Yaşar Demirel Publications

Production of ethyl dodecanoate (biodiesel) using lauric acid and methanol with a solid acid catalyst of sulfated zirconia is studied by using two distillation sequences. In the first sequence, the methanol recovery column follows the reactive distillation column. In the second sequence, the reactive distillation and methanol recovery columns are thermally coupled. Thermally coupled distillation sequences may consume less energy by allowing interconnecting vapor and liquid streams between the two columns to elminate reboiler or condenser or both. Here we study the thermally coupled side-stripper reactive distillation and eliminate the condenser of the reactive distillation column. Both the sequences are …

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An Integrated Approach For Phytate Degradation And Recovery Of Myo-Inositol And Phosphate As Valued-Added Products From The By-Products Of Corn Ethanol Industry, Jun Dang Dec 2010

An Integrated Approach For Phytate Degradation And Recovery Of Myo-Inositol And Phosphate As Valued-Added Products From The By-Products Of Corn Ethanol Industry, Jun Dang

Department of Chemical and Biomolecular Engineering: Dissertations, Theses, and Student Research

An integrated process was developed to hydrolyze the phytates in light steep water (LSW) and to simultaneously isolate inorganic phosphate (Pi) and myo-inositol products. The proposed integrated process is helpful in resolving the environmental and nutritional concerns in the use of corn gluten feed (CGF) in the animal diets. This process comprised of partial and total hydrolysis of LSW and intermediate anion exchange separation technique. The phytates in LSW were initially degraded to negatively charged myo-inositol phosphates (InsP2 - InsP5). The optimized experimental parameters for the partial hydrolysis of LSW were determined to be 2 h hydrolysis …

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Fibronectin For Use In Hemostats And Wound Stabilization In Trauma, Mohammed Halhouli Nov 2010

Fibronectin For Use In Hemostats And Wound Stabilization In Trauma, Mohammed Halhouli

Department of Chemical and Biomolecular Engineering: Dissertations, Theses, and Student Research

Exploring the phase during wound healing when fibrinogen (FBG) and fibronectin (FN) interact forming a small thin layer for cells to migrate and proliferate at the injury site is necessary for the primary building blocks and initial stages of skin recovery. The aim of this thesis is to illustrate that administrating a reasonable amount of (FN) and FBG, in a semi-organizational technique, to the wound site will encourage cell population and ECM formation, as well as, improve the wound healing process. WE hypothesized that FBG and FN interactions will configure the construction of dermal cells and their final fate to …

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Recombinant Factors For Hemostasis, Jennifer Calcaterra Jul 2010

Recombinant Factors For Hemostasis, Jennifer Calcaterra

Department of Chemical and Biomolecular Engineering: Dissertations, Theses, and Student Research

Trauma deaths are a result of hemorrhage in 37% of civilians and 47% military personnel and are the primary cause of death for individuals under 44 years of age. Current techniques used to treat hemorrhage are inadequate for severe bleeding. Preliminary research indicates that fibrin sealants (FS) alone or in combination with a dressing may be more effective; however, it has not been economically feasible for widespread use because of prohibitive costs related to procuring the proteins. To meet future demands for hemostatic therapies, FS will likely include recombinant human fibrinogen (rFI) and recombinant human Factor XIII (rFXIII). The underlying …

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Rapid Diagnosis Of Tuberculosis In A Peripheral Setting, Elsje Pienaar May 2010

Rapid Diagnosis Of Tuberculosis In A Peripheral Setting, Elsje Pienaar

Department of Chemical and Biomolecular Engineering: Dissertations, Theses, and Student Research

Tuberculosis is an ancient and worldwide epidemic affecting millions of people in mainly the developing world, killing almost 2 million people in 2008. Current diagnostic techniques are outdated and have proven insufficient to control the disease. Smear microscopy has poor sensitivity and culture is slow to yield results. Modern diagnostic techniques are making great strides in shortening time to result but are restricted by two qualities: 1) prohibitively high costs prevent implementation in resource poor areas, and 2) equipment and technician requirements limit application to centralized laboratories. There exists a divide between new technologies and the people that need them …

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Synthesis Of An Endothelial Cell Mimicking Surface Containing Thrombomodulin And Endothelial Protein C Receptor, Karl E. Kador Apr 2010

Synthesis Of An Endothelial Cell Mimicking Surface Containing Thrombomodulin And Endothelial Protein C Receptor, Karl E. Kador

Department of Chemical and Biomolecular Engineering: Dissertations, Theses, and Student Research

Synthetic materials for use in blood contacting applications have been studied for many years with limited success. One of the main areas of need for these materials is the design of synthetic vascular grafts for use in the hundreds of thousands of patients who have coronary artery bypass grafting, many without suitable veins for autologous grafts. The design of these grafts is constrained by two common modes of failure, the formation of intimal hyperplasia (IH) and thrombosis. IH formation has been previously linked to a mismatching of the mechanical properties of the graft and has been overcome by creating grafts …

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Retrofit Of Distillation Columns In Biodiesel Production Plants, Nghi Nguyen, Yaşar Demirel Jan 2010

Retrofit Of Distillation Columns In Biodiesel Production Plants, Nghi Nguyen, Yaşar Demirel

Yaşar Demirel Publications

Column grand composite curves and the exergy loss profiles produced by the Column-Targeting Tool of the Aspen Plus simulator are used to assess the performance of the existing distillation columns, and reduce the costs of operation by appropriate retrofits in a biodiesel production plant. Effectiveness of the retrofits is assessed by means of thermodynamics and economic improvements. We have considered a biodiesel plant utilizing three distillation columns to purify biodiesel (fatty acid methyl ester) and byproduct glycerol as well as reduce the waste. The assessments of the base case simulation have indicated the need for modifications for the distillation columns. …

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Nonequilibrium Thermodynamics Modeling Of Coupled Biochemical Cycles In Living Cells, Yaşar Demirel Jan 2010

Nonequilibrium Thermodynamics Modeling Of Coupled Biochemical Cycles In Living Cells, Yaşar Demirel

Yaşar Demirel Publications

Living cells represent open, nonequilibrium, self organizing, and dissipative systems maintained with the continuous supply of outside and inside material, energy, and information flows. The energy in the form of adenosine triphosphate is utilized in biochemical cycles, transport processes, protein synthesis, reproduction, and performing other biological work. The processes in molecular and cellular biological systems are stochastic in nature with varying spatial and time scales, and bounded with conservation laws, kinetic laws, and thermodynamic constraints, which should be taken into account by any approach for modeling biological systems. In component biology, this review focuses on the modeling of enzyme kinetics …

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A Kinetic Study Of In Vitro Lysis Of Mycobacterium Smegmatis , William J. Valente, Elsje Pienaar, A. Fast, A. Fluitt, Scott E. Whitney, Robert J. Fenton, Raul G. Barletta, O. Chacon, Hendrik J. Viljoen May 2009

A Kinetic Study Of In Vitro Lysis Of Mycobacterium Smegmatis , William J. Valente, Elsje Pienaar, A. Fast, A. Fluitt, Scott E. Whitney, Robert J. Fenton, Raul G. Barletta, O. Chacon, Hendrik J. Viljoen

Hendrik J. Viljoen Publications

The traditional diagnostic tests for tuberculosis consist of an acid fast stain and a culture test from a sputum sample. With the emergence of drug resistant strains of tuberculosis, nucleic acid amplification has become the diagnostic test of choice. The nucleic acid amplification test consists of four steps: sputum sample collection, lysis of bacilli to release DNA, DNA amplification by PCR and detection of PCR products. The DNA extraction step has been largely overlooked and this study describes a systematic approach to measure the kinetics of cell lysis in a Tris–EDTA buffer. Mycobacterium smegmatis is a saphorytic, fast-growing mycobacterium that …

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Thermodynamically Coupled Heat And Mass Flows In A Reaction-Transport System With External Resistances, Yaşar Demirel Mar 2009

Thermodynamically Coupled Heat And Mass Flows In A Reaction-Transport System With External Resistances, Yaşar Demirel

Yaşar Demirel Publications

Considerable work has been published on mathematically coupled nonlinear differential equations by neglecting thermodynamic coupling between heat and mass flows in reaction-transport systems. The thermodynamic coupling refers that a flow occurs without or against its primary thermodynamic driving force, which may be a gradient of temperature, or chemical potential, or reaction affinity. This study presents the modeling of thermodynamically coupled heat and mass flows of two components in a reaction-transport system with external heat and mass transfer resistances. The modeling equations are based on the linear nonequilibrium thermodynamics approach by assuming that the system is in the vicinity of global …

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Simulation Of Corn Stover And Distillers Grains Gasification With Aspen Plus, Ajay Kumar, Hossein Noureddini, Yaşar Demirel, David Jones, Milford Hanna Jan 2009

Simulation Of Corn Stover And Distillers Grains Gasification With Aspen Plus, Ajay Kumar, Hossein Noureddini, Yaşar Demirel, David Jones, Milford Hanna

Yaşar Demirel Publications

A model was developed to simulate the performance of a lab‐scale gasifier and predict the flowrate and composition of product from given biomass composition and gasifier operating conditions using Aspen Plus software. Mass balance, energy balance, and minimization of Gibbs free energy during the gasification were applied to determine the product gas composition. Carbon conversion efficiency and tar content were provided to the model as inputs as these could not be predicted by the model based on minimization of Gibbs free energy. Experiments for validation of the model were performed on a lab‐scale fluidized bed gasifier using corn stover and …

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A Fundamental Study Of The Pcr Amplification Of Gc-Rich Dna Templates, T. G. Mamedov, Elsje Pienaar, Scott E. Whitney, Joel R. Termaat, G. Carvill, R. Goliath, Anuradha Subramanian, Hendrik J. Viljoen Dec 2008

A Fundamental Study Of The Pcr Amplification Of Gc-Rich Dna Templates, T. G. Mamedov, Elsje Pienaar, Scott E. Whitney, Joel R. Termaat, G. Carvill, R. Goliath, Anuradha Subramanian, Hendrik J. Viljoen

Hendrik J. Viljoen Publications

A theoretical analysis is presented with experimental confirmation to conclusively demonstrate the critical role that annealing plays in efficient PCR amplification of GC-rich templates. The analysis is focused on the annealing of primers at alternative binding sites (competitive annealing) and the main result is a quantitative expression of the efficiency (η) of annealing as a function of temperature (TA), annealing period (tA), and template composition. The optimal efficiency lies in a narrow region of TA and tA for GC-rich templates and a much broader region for normal GC templates. To confirm the …

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Effect Of Intermittent Applications Of Continuous Ultrasound Signal On The Morphology And Cytoskeletal Organization In Chondrocytes, Anuradha Subramanian, Sandra Noriega, Gulnara Hasanova Oct 2008

Effect Of Intermittent Applications Of Continuous Ultrasound Signal On The Morphology And Cytoskeletal Organization In Chondrocytes, Anuradha Subramanian, Sandra Noriega, Gulnara Hasanova

Anuradha Subramanian Publications

The cellular component of the articular cartilage, chondrocytes, have long been recognized as strain-sensitive cells, and have the ability to sense mechanical stimulation through surface receptors and intracellular signaling pathways. In the present study, a continuous ultrasound wave for predetermined time intervals was employed, as opposed to pulsed-ultrasound used in previous studies, to stimulate chondrocytes seeded in 3D scaffolds. Chondrocytes seeded in 3D scaffolds (n = 6) were subjected to stimulation by US as follows: 1.5 MHz for 161 s, 5.0 MHz for 51 s and 8.5 MHz for 24 s and the US signal was applied twice in a …

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Importance Of Annealing Times In The Pcr Amplification Of Gc-Rich Genes, Anuradha Subramanian, Tarlan Mamedov, Elsje Pinnear, Hendrik J. Viljoen Oct 2008

Importance Of Annealing Times In The Pcr Amplification Of Gc-Rich Genes, Anuradha Subramanian, Tarlan Mamedov, Elsje Pinnear, Hendrik J. Viljoen

Anuradha Subramanian Publications

This combined theoretical and experimental study conclusively demonstrates that annealing times play a crucial role in the PCR amplification of GC-rich templates. To assist with the DNA amplification of GC-rich targets, a theory has been developed that evaluates the fraction of annealed primer/polymerase complex at the correct binding site as a function of annealing temperature and annealing period. Optimum annealing times lie in the range of 3 to 6 s, and annealing times greater than 10 s yield smeared PCR amplified products. The theory has been applied to the PCR amplification of the following human cDNA templates: ARX gene (78.2%, …

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Control On Platelet Adhesion And Activation Events By Selective And Specific Binding Of Plasma Protein On Peptide-Coupled Surface, Anuradha Subramanian, Sanjukta Guha-Thankruta Oct 2008

Control On Platelet Adhesion And Activation Events By Selective And Specific Binding Of Plasma Protein On Peptide-Coupled Surface, Anuradha Subramanian, Sanjukta Guha-Thankruta

Anuradha Subramanian Publications

Implantable material surfaces suffer from unavoidable major events of blood–biomaterial interactions leading to thrombus formation and finally foreign material rejection. An albuminated surface can minimize the platelet adhesion and activation that reduces the chance of thrombus formation. The main objective of our work was to design surfaces having maximum human serum albumin (HSA) binding capacity over other plasma proteins in blood by covalently grafting custom made peptides having selectivity and specificity towards HSA. First, silicon wafer surfaces were chemically treated to generate –NH2 terminated self-assembled monolayer (SAM). SAMs were then covalently coupled with (a) peptides using 1- ethyl-3-[3-dimethylaminopropyl]carbodiimide hydrochloride and …

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Modeling Of Thermodynamically Coupled Reaction-Transport Systems, Yaşar Demirel May 2008

Modeling Of Thermodynamically Coupled Reaction-Transport Systems, Yaşar Demirel

Yaşar Demirel Publications

Nonisothermal reaction-diffusion systems control the behavior of many transport and rate processes in physical, chemical and biological systems, such as pattern formation and chemical pumps. Considerable work has been published on mathematically coupled nonlinear differential equations by neglecting thermodynamic coupling between a chemical reaction and transport processes of mass and heat. This study presents the modeling of thermodynamically coupled system of a simple elementary chemical reaction with molecular heat and mass transport. The thermodynamic coupling refers that a flow occurs without or against its primary thermodynamic driving force, which may be a gradient of temperature or chemical potential or reaction …

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Thermodynamically Coupled Transport In Simple Catalytic Reactions, Yaşar Demirel Jan 2008

Thermodynamically Coupled Transport In Simple Catalytic Reactions, Yaşar Demirel

Yaşar Demirel Publications

Considerable work published on chemical reaction-diffusion systems investigates mainly mathematically coupled nonlinear differential equations. This study presents the modeling of a simple elementary chemical reaction with thermodynamically and mathematically coupled heat and mass transport with external mass and heat transfer resistances. The thermodynamic coupling refers that a flow occurs without or against its primary thermodynamic driving force, which may be a gradient of temperature or chemical potential. The modeling is based on the linear nonequilibrium thermodynamics approach and phenomenological equations by assuming that the system is in the vicinity of global equilibrium. This approach does not need detailed coupling mechanisms. …

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Characterization Of A Polymer Surface With Sequentially Immobilized Proteins, Anuradha Subramanian, Tarlan Mammedov, Karl E. Kador Jan 2008

Characterization Of A Polymer Surface With Sequentially Immobilized Proteins, Anuradha Subramanian, Tarlan Mammedov, Karl E. Kador

Anuradha Subramanian Publications

To overcome the procoagulant processes on the surfaces of biomaterials, surface modifications have been undertaken to achieve hemocompatability characteristics that are comparable to the native endothelium. Our immediate goal in this paper is to design and develop strategies to inhibit thrombin activation on biomaterial surfaces. We will use biodurable polyurethane (PU) as the background polymer and synthesize biomaterial surfaces containing two immobilized recombinant proteins. To attain our objective, we have first undertaken the surface modification of biodurable polyurethane (chronoflex- AR) to enable the sequential immobilization of proteins via a bi-dentate bridge, a novel modification strategy. We have verified the creation …

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The Tri-Frame Model, Elsje Pienaar, Hendrik J. Viljoen Dec 2007

The Tri-Frame Model, Elsje Pienaar, Hendrik J. Viljoen

Hendrik J. Viljoen Publications

The tri-frame model gives mathematical expression to the transcription and translation processes, and considers all three reading frames. RNA polymerases transcribe DNA in single nucleotide increments, but ribosomes translate mRNA in pairings of three (triplets or codons). The set of triplets in the mRNA, starting with the initiation codon (usually AUG) defines the open reading frame (ORF). Since ribosomes do not always translocate three nucleotide positions, two additional reading frames are accessible. The -1RF and the +1RF are triplet pairings of the mRNA which are accessed by shifting one nucleotide position in the 5’ and 3’ directions respectively. Transcription is …

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Ribosome Kinetics And Aa-Trna Competition Determine Rate And Fidelity Of Peptide Synthesis, Aaron Fluitt, Elsje Pienaar, Hendrik J. Viljoen Oct 2007

Ribosome Kinetics And Aa-Trna Competition Determine Rate And Fidelity Of Peptide Synthesis, Aaron Fluitt, Elsje Pienaar, Hendrik J. Viljoen

Hendrik J. Viljoen Publications

It is generally accepted that the translation rate depends on the availability of cognate aa-tRNAs. In this study it is shown that the key factor that determines translation rate is the competition between near-cognate and cognate aa-tRNAs. The transport mechanism in the cytoplasm is diffusion, thus the competition between cognate, near-cognate and non-cognate aa-tRNAs to bind to the ribosome is a stochastic process. Two competition measures are introduced; C (i) and R (i) (i = 1, 64) are quotients of the arrival frequencies of near-cognates vs. cognates and noncognates vs. cognates, respectively. Furthermore, the reaction …

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Rational De Novo Gene Synthesis By Rapid Polymerase Chain Assembly (Pca) And Expression Of Endothelial Protein-C And Thrombin Receptor Genes, Tarlan G. Mamedov, Nisha V. Padhye, Hendrik J. Viljoen, Anuradha Subramanian Sep 2007

Rational De Novo Gene Synthesis By Rapid Polymerase Chain Assembly (Pca) And Expression Of Endothelial Protein-C And Thrombin Receptor Genes, Tarlan G. Mamedov, Nisha V. Padhye, Hendrik J. Viljoen, Anuradha Subramanian

Anuradha Subramanian Publications

The assembly of synthetic oligonucleotides into genes and genomes is an important methodology. Several methodologies for such synthesis have been developed, but they have two drawbacks: (1) the processes are slow and (2) the error frequencies are high (typically 1–3 errors/kb of DNA). Thermal damage is a major contributor to biosynthetic errors. In this paper, we elucidate the advantages of rapid gene synthesis by polymerase chain assembly (PCA) when used in combination with smart error control strategies. We used a high-speed thermocycler (PCRJet®) to effectively minimize thermal damage and to perform rapid assembly of synthetic oligonucleotides to construct two different …

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Effect Of Hydrofluoric Acid In Oxidizing Acid Mixtures On The Hydroxylation Of Silicon Surface, Sanjukta Guhathakurta, Anuradha Subramanian Sep 2007

Effect Of Hydrofluoric Acid In Oxidizing Acid Mixtures On The Hydroxylation Of Silicon Surface, Sanjukta Guhathakurta, Anuradha Subramanian

Anuradha Subramanian Publications

Silicon (100) wafers, predipped in 1:20 (v/v) HF water, were treated separately with four different acid mixtures, viz., HNO3, H2SO4–H2O2, HNO2–HF, and H2SO4–H2O2–HF, for different time durations. Subsequent vigorous rinsing with deionized water rendered the wafer surfaces with hydroxyl termination. Synthesized surfaces were characterized by diffuse-reflectance infrared Fourier transform spectroscopy (DRIFTS), ellipsometry, contact angle and atomic force microscopy. Surfaces treated with HN03 and H2SO2–H2O2 showed increasing hydrophilicity at room temperature due to …

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Detection Of Ultrathin Biological Films Using Vacuum Ultraviolet Spectroscopic Ellipsometry, Dileep K. Goyal, Greg K. Pribil, John A. Woollam, Anuradha Subramanian Jul 2007

Detection Of Ultrathin Biological Films Using Vacuum Ultraviolet Spectroscopic Ellipsometry, Dileep K. Goyal, Greg K. Pribil, John A. Woollam, Anuradha Subramanian

Anuradha Subramanian Publications

Spectroscopic ellipsometry (SE) is a non-contact and a non-destructive optical technique used in characterization of thin films. It is widely used to determine optical constants, thickness in multilayer stacks and microstructure (voids, alloy fraction, or mixed phase composition). This paper reports on a systematic investigation of the optical properties of two different kinds of silane compounds: 3-aminopropyltriethoxysilane (APTES) and 3-glycidoxypropyltriethoxy-silane (GPS) as well as for immunoglobulin G (IgG) attached to these modified samples using vacuum ultraviolet spectroscopic ellipsometry (VUV-SE). VUV-SE is a newly developed technique and used to evaluate the strength and energy of the interband electronic excitations/transitions in these …

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Developement Of Serum-Free Media In Cho-Dg44 Cells Using A Central Composite Statistical Design, Ananth Parampalli, Kent M. Eskridge, Leonard Smith, Michael M. Meagher, M. C. Mowry, Anuradha Subramanian Jun 2007

Developement Of Serum-Free Media In Cho-Dg44 Cells Using A Central Composite Statistical Design, Ananth Parampalli, Kent M. Eskridge, Leonard Smith, Michael M. Meagher, M. C. Mowry, Anuradha Subramanian

Anuradha Subramanian Publications

A serum free medium was developed for the production of recombinant antibody against Botulinum A (BoNTA) using dihydrofolate reductase deficient Chinese Hamster Ovary Cells (CHO-DG44) in suspension culture. An initial control basal medium was prepared, which was similar in composition to HAM’s F12: IMDM (1:1) supplemented with insulin, transeferrin, selenium and a lipid mixture. The vitamin concentration of the basal medium was twice that of HAM’s F12: IMDM (1:1). CHO-DG44 cells expressing S25 antibody grew from 2 x 105 cells to maximum cell density of 1.04 x 106 cells/ml after 5 days in this control medium. A central …

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Thermoeconomics Of Seasonal Latent Heat Storage System, Yaşar Demirel, H. Hüseyin Öztürk Mar 2007

Thermoeconomics Of Seasonal Latent Heat Storage System, Yaşar Demirel, H. Hüseyin Öztürk

Papers in Thermal Mechanics

A simple thermoeconomic analysis is performed for a seasonal latent heat storage system for heating a greenhouse. The system consists of three units that are a set of 18 packed-bed solar air heaters, a latent heat storage tank with 6,000 kg of technical grade paraffin wax as phase-changing material, and a greenhouse of 180m2. The cost rate balance for the output of a unit is used to estimate the specific cost of exergy for a yearly operation. Based on the cost rate of exergy, fixed capital investment, operating cost, and economic data, approximate cash-flow diagrams have been prepared. The systems …

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Identification And Characterization Of Calcium And Manganese Transporting Atpase (Pmr1) Gene Of Pichia Pastoris, Michael P. Dux, Mehmet Inan Feb 2007

Identification And Characterization Of Calcium And Manganese Transporting Atpase (Pmr1) Gene Of Pichia Pastoris, Michael P. Dux, Mehmet Inan

Papers in Biotechnology

A gene homologous to Saccharomyces cerevisiae PMR1 has been cloned in the methylotrophic yeast Pichia pastoris.The entire P. pastoris PMR1 gene (PpPMR1 ) codes a protein of 924 amino acids. Sequence analysis of the PpPMR1 cDNA and the genomic DNA revealed that there is no intron in the coding region. The putative gene product contains all of the conserved regions observed in P-type ATPases and exhibits 66.2%, 60.3% and 50.6% identity to Pichia angusta (Hansenula polymorpha), Saccharomyces cerevisiae PMR1 and human ATP2C1 gene products, respectively. A pmr1 null mutant strain of P. pastoris exhibited growth defects in media with the …

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Cell Bank Characterization And Fermentation Optimization For Production Of Recombinant Heavy Chain C-Terminal Fragment Of Botulinum Neurotoxin Serotype E (Rbonte(HC): Antigen E) By Pichia Pastoris, Jayanta Sinha, Mehmet Inan, Sarah Fanders, Shinichi Taoka, Mark Gouthro, Todd Swanson, Rick Barent, Ardis Barthuli, Bonnie M. Loveless, Leonard A. Smith, Theresa Smith, Ian Henderson, John Ross, Michael M. Meagher Jan 2007

Cell Bank Characterization And Fermentation Optimization For Production Of Recombinant Heavy Chain C-Terminal Fragment Of Botulinum Neurotoxin Serotype E (Rbonte(HC): Antigen E) By Pichia Pastoris, Jayanta Sinha, Mehmet Inan, Sarah Fanders, Shinichi Taoka, Mark Gouthro, Todd Swanson, Rick Barent, Ardis Barthuli, Bonnie M. Loveless, Leonard A. Smith, Theresa Smith, Ian Henderson, John Ross, Michael M. Meagher

Papers in Biochemical Engineering

A process was developed for production of a candidate vaccine antigen, recombinant C-terminal heavy chain fragment of the botulinum neurotoxin serotype E, rBoNTE(Hc)in Pichia pastoris. P. pastoris strain GS115 was transformed with the rBoNTE(Hc) gene inserted into pHILD4 Escherichia coli—P. pastoris shuttle plasmid. The clone was characterized for genetic stability, copy number, and BoNTE(Hc) sequence. Expression of rBoNTE(Hc) from the Mut+ HIS4 clone was confirmed in the shake-flask, prior to developing a fed-batch fermentation process at 5 and 19 L scale. The fermentation process consists of a glycerol growth phase in …

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Protection With Recombinant Clostridium Botulinum C1 And D Binding Domain Subunit (Hc) Vaccines Against C And D Neurotoxins, Robert P. Webb, Theresa J. Smith, Patrick M. Wright, Vicki A. Montgomery, Michael M. Meagher, Leonard A. Smith Jan 2007

Protection With Recombinant Clostridium Botulinum C1 And D Binding Domain Subunit (Hc) Vaccines Against C And D Neurotoxins, Robert P. Webb, Theresa J. Smith, Patrick M. Wright, Vicki A. Montgomery, Michael M. Meagher, Leonard A. Smith

Michael Meagher Publications

Recombinant botulinum Hc (rBoNT Hc) vaccines for serotypes C1 and D were produced in the yeast Pichia pastoris and used to determine protection against four distinct BoNT C and D toxin subtypes. Mice were vaccinated with rBoNT/C1 Hc, rBoNT/D Hc, or with a combination of both vaccines and challenged with BoNT C1, D, C/D, or D/C toxin. Mice receiving monovalent vaccinations were partially or completely protected against homologous toxin and not protected against heterologous toxin. Bivalent vaccine candidates completely survived challenges from all toxins except D/C toxin. These results indicate the recombinant C1 and D Hc vaccines are not only …

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Fast And Efficient Generation Of Influenza A Virus Like Particles From Synthetic Genes, Theresa Schinko, Harutha Thaisuchat, Hendrik J. Viljoen, Nisha Padhye, Reingard Grabherr Oct 2006

Fast And Efficient Generation Of Influenza A Virus Like Particles From Synthetic Genes, Theresa Schinko, Harutha Thaisuchat, Hendrik J. Viljoen, Nisha Padhye, Reingard Grabherr

Hendrik J. Viljoen Publications

Co-transfection of bacmids resulted in the generation of influenza A virus like particles in the supernatant of Sf9 cells. VLPs were purified by means of Sucrose gradient centrifugation and the expected results were confirmed by Electron microscopy, Western Blot analysis and hemagglutination assays.

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Thermal Analysis Of The Vortex Tube Based Thermocycler For Fast Dna Amplification: Experimental And Two-Dimensional Numerical Results, V. Raghavan, Scott E. Whitney, Ryan J. Ebmeier, Nisha V. Padhye, Michael Nelson, Hendrik J. Viljoen, George Gogos Sep 2006

Thermal Analysis Of The Vortex Tube Based Thermocycler For Fast Dna Amplification: Experimental And Two-Dimensional Numerical Results, V. Raghavan, Scott E. Whitney, Ryan J. Ebmeier, Nisha V. Padhye, Michael Nelson, Hendrik J. Viljoen, George Gogos

Hendrik J. Viljoen Publications

In this article, experimental and numerical analyses to investigate the thermal control of an innovative vortex tube based polymerase chain reaction (VT-PCR) thermocycler are described. VT-PCR is capable of rapid DNA amplification and real-time optical detection. The device rapidly cycles six 20 μl 96 bp λ-DNA samples between the PCR stages (denaturation, annealing, and elongation) for 30 cycles in approximately 6 min. Two-dimensional numerical simulations have been carried out using computational fluid dynamics (CFD) software FLUENT v.6.2.16. Experiments and CFD simulations have been carried out to measure/predict the temperature variation between the samples and within each sample. Heat transfer rate …

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