Chemical Engineering Commons^™

Cloning, Fed-Batch Expression And Purification Of A Novel Anti-Candida Peptide And Development Of A Cleavage Resistant Variant Of Green Fluorescence Protein, Rudra Palash Mukherjee

Graduate Theses and Dissertations

This work illustrates that the intelligent design of a bioprocess for the production of peptides of various length is possible by having a prior knowledge of desired product, cell line, fermentation conditions, and choices for downstream recovery. Cloning, expression, and recovery of a novel 12-mer anti-Candida peptide served as an illustrative case for a proposed Escherichia coli platform. The antifungal peptide, expressed as a fusion to GFPUV during high call density fed-batch, was recovered from cell lysate, concentrated using ion exchange chromatography, and finally cleaved with cyanogen bromide. The platform was capable of producing active peptide capable of arresting the …

Efficiency And Particulate Matter Emissions Testing Of Wood Burning Heating Units, Collin W. Michael

Chemical Engineering Undergraduate Honors Theses

The University of Arkansas StoveHOGS team developed a method for efficiency and particle emissions testing of wood fired heaters. The EPA currently regulates the particulate emissions of wood burning stoves, and the goal of this project was to develop a cheaper, easier method for small manufacturers to test the efficiency and particulate emissions of wood burning stoves without sending them to a testing facility. The team used EPA and CSA testing standards to design and test a method that could accomplish the same task in a simpler and more cost effective manner.

Micellular Electrokinetic Chromatography For Studying Amyloid Beta Oligomer Membrane Affinity, Andrew Bryson

Biomedical Engineering Undergraduate Honors Theses

Amyloid Beta (Aβ) was the major focus of this study. It is a peptide that is present in the brain with a high tendency to self-aggregate. When this protein aggregates, it forms oligomers and protofibrils which in turn are deposited as senile plaques in the brain. The reason for the concern with these plaques is their association with the neurological disorder Alzheimer’s disease. It has been found that the most dangerous oligomers are formed in a portion of the plasma membrane known as lipid rafts. The purpose of this study was to understand how micelles affect the aggregation properties of …

Rapid, Low-Cost Biosensor For Water-Borne Pathogens In Low-Resource Environments, Kimberly Cribbs

Chemical Engineering Undergraduate Honors Theses

When testing water quality, “microbiological results typically require a minimum of 24 hours to complete” due to reliance on the traditional and inexpensive cultivation method. In 2000, an isothermal DNA amplification method termed loop-mediated isothermal amplification (LAMP) was invented allowing for microbiological assessments to be performed in less than one hour without the need for an expensive thermocycler. In 2013, the World Health Organization reported LAMP as an “attractive diagnostic platform for resource-poor settings: it is fast [15-40 min], isothermal [requiring only a heat block], robust to inhibitors and reaction conditions that usually adversely affect PCR methods, and it generates …

Particle Image Velocimetry Design & Installation, Zach Ritchie

Mechanical Engineering Undergraduate Honors Theses

This work will mainly focus on the design, construction, and installation of the Particle Image Velocimetry (PIV) system in the Chemical Hazards Research Center wind tunnel. The PIV system utilizes a Class IV (double pulsed) laser, optics to produce a light sheet, timing circuitry, and a high-resolution camera (with buffered output) to measure a system’s velocity (two-dimensional) field by determining the displacement of particles over the time between laser pulses. For maximum mobility and functionality, the PIV system was installed in the center of the tunnel on a moveable cart with the laser and camera mounted to an adjustable support. …

Local Delivery Of Ctla-4 Blockade Inhibits Growth Of Pancreatic Tumors, Jack Baltz

Biomedical Engineering Undergraduate Honors Theses

Immune checkpoint blockade has demonstrated great potential in activating antitumor immunity. Ipilimumab is a monoclonal antibody which targets cytotoxic T-lymphocyte antigen-4. CTLA-4 belongs to the CD28 class of receptors and is found on the surface of CD4⁺ and CD8⁺ T cells. CTLA-4 acts to suppress the immune system when bound to CD80 and CD86 receptors on antigen presenting cells. Ipilimumab, or anti-CTLA-4, has shown to be effective in significantly extending the survival of patients with metastatic melanoma. However, systemic delivery of Ipilimumab also induces significant side effects such as: colitis, dermatitis, uveitis, and hypophysitis. In order to minimize …

Targeted Drug Delivery Using Peptoid Based Nanospheres, Kaylee J. Smith

Chemical Engineering Undergraduate Honors Theses

While medicine has improved greatly in the last couple of decades, there are negative side effects that accompany many drugs. Undesirable side effects could be greatly reduced if non-systemic drug delivery systems were used because the medicine would harm diseased cells at a much higher rate than it does healthy cells. One possible non-systemic drug delivery system is peptoid nanospheres. These nanospheres will then be linked to another peptoid that is engineered to attach almost exclusively to diseased cells.

This research project is focused on designing peptoids that will form nanospheres in solution. Four specific peptoids were synthesized and tested …

Efficiency And Particulate Matter Emissions Testing Of Wood Burning Heating Units, Andrew J. Casey

Chemical Engineering Undergraduate Honors Theses

For the 2016 WERC/IEE competition, our project regarded the efficiency and particulate matter emissions testing of wood burning heating units. The purpose of the project was to develop a cheap and effective testing method for combustion units in order to decrease manufacturers’ research and development costs. This would ultimately lower the entry barrier to the market and increase the number of manufacturers on the market. This would lead to more efficient stoves being designed and the stoves would be cheaper as a result of the increased competitive market. This would have many benefits on society; the primary benefit being that …

Development Of A Simple Handheld Biosensor For Waterborne Pathogens, Bryce C. Jones

Chemical Engineering Undergraduate Honors Theses

Current methods of detecting waterborne pathogens involve testing strips which take 24-48 hours to yield results, or require expensive equipment in order to function. In minimalist environments, these two technologies are not always applicable to test water quality. With the emergence of a new method of PCR, named LAMP PCR, it is possible to quickly and accurately detect pathogen DNA in a water sample. In order to scale this technique into a simple device, the aspects of the reaction must be accommodated, and a visual detection method chosen. A handheld device which keeps the isothermal LAMP PCR stable for the …

Haul Truck Tires Recycling, Marina E. Lee

Chemical Engineering Undergraduate Honors Theses

The Ball Hogs competed in Task 2 - Haul Truck Tires in the 2016 Waste-Management Education and Research Consortium (WERC) International Environmental Design Contest. This task required designing a solution to recycle discarded haul truck tires from mining sites. Our solution was to use the treads of these haul truck tires to construct liners for ball mills. Recycling haul truck tires in this manner would save the mining companies a substantial amount of money and would result in a decrease of carbon emissions.

Wastewater Reuse, Zachary J. Bare

Chemical Engineering Undergraduate Honors Theses

Approximately 1.2 billion people around the world live in areas of physical water scarcity. This could increase to half of the world’s population by 2030 and could displace 24 to 700 million people unless steps are taken to ensure adequate water supply. Water scarcity is an escalating issue within the United States, specifically in Western inland states with arid climates. This scarcity is encouraging communities to investigate tertiary level municipal wastewater treatment, allowing for reuse of wastewater. Unfortunately, wastewater contains numerous contaminants that are not regulated by the Environmental Protection Agency (EPA) under the Safe Drinking Water Act (SDWA). Many …

Efficiency And Particulate Matter Emissions Testing Of Wood Burning Heating Units, Lindsey Mayo

Chemical Engineering Undergraduate Honors Theses

The performance and use of wood-burning stoves as a heating source is carefully regulated by the Environmental Protection Agency (EPA). The EPA requires a rigorous and exhaustive testing protocol be conducted on each unit before it can be sold commercially in order to ensure that the stove in question will not have a detrimental effect on the surrounding environment. However, this testing routine is incredibly time intensive and costly, resulting in a 90% decrease in the number of stove manufacturers since 1988. This decreased competition has ultimately fostered an industry free from competition and motivation to produce clean and efficient …

Efficiency And Particulate Matter Emissions Testing Of Wood Burning Heating Units, Elisabeth E. Westcott

Chemical Engineering Undergraduate Honors Theses

The Environmental Protection Agency (EPA) is continually revising the regulations on wood-burning units to reduce the particulate matter emissions in the United States. These revisions have caused a large decline in wood-burning stove manufacturers as they bring the need for research and development on current units and small manufacturers cannot burden the large costs. The StoveHogs became aware of this manufacturer decline in the industry and saw an opportunity to help small manufacturers, backyard inventors, and the stove industry as a whole. In order to reduce the costs of research and development on stoves, the StoveHogs designed and tested a …

Investigating The Modulation Of Aggregating Amyloid Beta 40, Marlee J. Motes

Chemical Engineering Undergraduate Honors Theses

Amyloid beta protein has been linked to the formation of Alzheimer’s disease in patients.¹ Plaques form from amyloid beta fibrils. The formation of these plaques between neural connections in the brain are associated with Alzheimer’s disease.² The reduction of the formation of fibrils can be linked to utilizing protein mimics. The protocols that are used to reproduce the simulation of amyloid beta in the brain can be very important. Also, the structure of the protein mimic that is being used to inhibit the formation of fibrils can determine how the amyloid beta plaques are reduced.

The structure of sequence KLLFFLFFLLK …

Peptoid Morphology Studies And Its Performance In Inhibiting Islet Amyloid Polypeptide, Dongwon Park

Chemical Engineering Undergraduate Honors Theses

Abstract 1

Proteins have various arrays of functions in human bodies. The bio-functions of proteins are depend on their amino acid sequences and folding processes that affect protein structure. While most of proteins fold in their own pathways, some of them misfold and aggregate due to mutations caused by various reasons. These aggregations are believed to be main causes of protein conformation disorders like Alzheimer's disease, Type II diabetes, Huntington's disease, and prion disease. An aggregated form of amyloid beta is considered as a hallmark of Alzheimer's disease. Amyloid beta develops from oligomer into a fibril as the aggregation process …

Werc Task #1 - Efficiency And Particulate Matter Emissions Testing Of Wood Burning Heating Units, Jonathan A. Shumaker

Chemical Engineering Undergraduate Honors Theses

A design of a method for calculating the efficiency and particulate matter emission rates was developed for use on wood stoves. The project was completed for the WERC competition which is an international design contest. The prevalence of wood burning as a form of heating, current EPA regulations, and current market conditions were major factors in forming the necessity of this testing method. Design was not limited to outlining the design specifications, the apparatus was built and run. Optimization of the method continued until completion of the project. If the method would continue to be improved then it would be …

Werc Task #1 - Open: Efficiency And Particulate Matter Emissions Testing Of Wood Burning Heating Units, Teni R. Butler

Chemical Engineering Undergraduate Honors Theses

Wood burning has significant environmental and health impacts. This research focused on creating low-cost, reliable test methods for identifying particulate matter emissions to the atmosphere, while obtaining essential data for efficiency calculations of wood combustion.

Field Amplified Sample Stacking On Amyloid Beta (1-42) Oligomers Using Capillary Electrophoresis, Sadia Ali Paracha

Graduate Theses and Dissertations

According to recent literature, it is believed that the oligomeric form of amyloid beta (Aβ) is the leading cause of Alzheimer’s disease (1; 8; 10; 12-18). Additionally, recent studies have eluded to the impact of Alzheimer’s disease (AD) both economically and Socially in today’s society where an increase of about 71% of AD related deaths were recorded between 2000 and 2013 (7). Since the oligomeric forms of Aβ vary in size, shape and some believe conformation, it is vital to utilize a separation technique, such as capilllary electrophoresis (CE) to further understand Aβ aggregation. By understanding Aβ aggregation, treatment of …

Production Of Ethanol From Cereal Food Fines Using Dilute-Acid Hydrolysis, Andrew Edward Arnett

Graduate Theses and Dissertations

Cereal food fines are a leftover by-product from breakfast cereal processing that is typically sold as animal feed or used as a pet food ingredient; however this product could be of greater value as a feedstock for the production of fuel ethanol via fermentation. In order for this material to be fermented it has to be broken down in to simple sugars using hydrolysis. One method of hydrolysis is called dilute-acid hydrolysis, whereby low concentrations of acid are added to the feedstock to facilitate the breaking of chemical bonds. This study investigates the effect of different concentrations of acid to …

Evapoporometry: An Effective Analytical Technique For Membrane Pore Size Characterization Of Hollow Fiber Membranes, Alex J. Moix

Chemical Engineering Undergraduate Honors Theses

A new analytical technique called evapoporometry has shown to be an effective and inexpensive method for membrane pore size characterization. This technique is based on the correlation between vapor pressure and pore size as described by the Kelvin equation. Evapoporometry has many advantages over tradition pore size characterization techniques. This technique allows for large sample sizes, uses minimal equipment, is capable of analyzing membranes within a wide range of pore sizes, and provides a highly descriptive representation of the pore distribution. This research looks at the application of evapoporometry as a technique for characterization of hollow fiber membranes. Using the …

Separation Of Oil From A Brackish Water Stream, Kayli A. Quinton

Chemical Engineering Undergraduate Honors Theses

In the past 40 years, a variety of enhanced oil recovery (EOR) methods have been developed and applied to mature and mostly depleted oil reservoirs. Chemical and sonic stimulation are two enhanced oil recovery methods in which emulsions are created either as a primary or secondary effect. The resulting emulsion viscosity is considerably lower than that of dry crude thus increasing permeability of and recovery from pay zones. During Chemical enhanced oil recovery, caustic or preformed surfactants are injected into oil reservoirs, which results in flooding and periodic breakthrough of stable oil-water emulsions. The emulsions from chemical enhanced oil recovery …

Effects Of Magnetically Induced Micro-Mixing On Nanofiltration Performance, Guanghui Song

Graduate Theses and Dissertations

Nanofiltration (NF) is a relatively new membrane separation process mainly used for removing low molecular weight species from aqueous and non-aqueous solutions. NF membranes suffer from concentration polarization leading to membrane fouling thus compromised membrane performance. Magnetically responsive nanofiltration (NF) membranes functionalized with superparamagnetic nanoparticles (SPNs) attached to the chain ends of grafted polymer nanolayers have been shown to be effective in breaking concentration polarization at the membrane-liquid interface under an appropriate external oscillating magnetic field. Under an oscillating magnetic field, the movement of the polymer chains acts as micro-mixer leading to the suppression of concentration polarization and improved filtration …

Modified Polysulfone Nanofiltration Membrane Synthesis For Hydraulic Fracturing Water Recycle, Blake Alexander Johnson

Graduate Theses and Dissertations

The use of hydraulic fracturing has resulted in significant increases in the yield of oil and natural gas, as water pumped into wells at high pressure cracks the formations and releases the hydrocarbons that are locked in the rocks. This process has created large volumes of brackish water that is very difficult to process and is often disposed of into injection wells. Suspended solids and some dissolved solids are more readily removed, but the multivalent ions found in certain salts can precipitate in a well and complicate the reuse of flowback in future hydraulic fracturing operations.

Nanofiltration, a membrane separation …

Eicosapentaenoic Acid (Epa) From Porphyridium Cruentum: Increasing Growth And Productivity Of The Microalgae For Pharmaceutical Products, Maryam Asgharpour

Graduate Theses and Dissertations

One of the major nutritional requirements in our diet is an adequate intake of omega-3 specially eicosapentaenoic acid (EPA). In the present study, the effects of two temperatures (16°C & 20˚C) and light intensities (140 & 180µE/M2.S) and four nitrate levels (0.075, 0.3, 0.5 and 0.7g/L) on the cell growth and lipid productivity of Porphyridium cruentum, one of the most promising oil-rich species of microalgae, were investigated. A growth comparison was carried out using pure CO2 and 5% CO2/air. Additionally, the ratio of the fatty acids with omega-3 and omega-6 groups at various growth conditions were compared, since an appropriate …

Swelling-Etching Characterization Of Copper (I) Oxide - Pdms For The Development Of Micro/Nano - Particles Composite Mems Corrosion Sensor, Abdoul Kader Maiga

Graduate Theses and Dissertations

The primary objective for this thesis is to contribute to the understanding of the oxide removal process for a corrosion sensing device. The goal for designing such a device is for monitoring corrosion on metallic structures. The sensing material (6.35mm x 1mm discs) of the device is composed of copper (I) oxide particles mixed in some polydimethylsiloxane (PDMS). The PDMS, “housing,” is meant for controlling the oxidation rate through the sensing material. A solvent was used to facilitate the etchant diffusion through the PDMS matrix. Toluene and acetic acid were the ideal solvent and etchant, respectively, for carrying out the …

Peptoid-Based Klvff Mimics: A Unique Approach To Alzheimer's Disease, James Phillip Turner

Graduate Theses and Dissertations

Alzheimer’s disease (AD) is the leading form of dementia worldwide. AD patients experience a slow, gradual cognitive decline that includes loss of memory and behavioral stability as the disease progresses. Surprisingly, AD is the sixth leading cause of death in the United States and has had a profound impact on the U.S. economy. Though there are medications to help improve the quality of life of diagnosed patients for a period of time, there is still no cure for AD. AD is characterized by the build-up of amyloid plaques that develop from the aggregation of the amyloid beta protein (Aβ) in …

Using Peptoids To Build Robust, Efficient Microarray Systems, Dhaval Sunil Shah

Graduate Theses and Dissertations

Recent studies have shown microarrays to be indispensable for various biological applications, allowing for high-throughput processing and screening of biological samples such as RNA, DNA, proteins and peptides using a small sample volume (< 1 µL). Peptoids (poly-N-substituted glycine oligomers) can be used as a substitute for antibodies as capture molecules, as well as coatings for slides in antibody microarrays. The ease of synthesis of peptoids, high customizability with desired bioactivity, and speed of synthesis allows us to build a diagnostic system with a large dynamic range that can detect biomolecules from a minimal sample size. In this study, peptoid-based antibody mimics are designed to have both structural and functional features similar to those of antibodies, including a stable constant region (scaffolding) and a variable region for protein recognition. Peptoids previously screened via combinatorial library synthesis to be specific to bind Mdm-2 (mouse double minute 2 homolog) and GST (gluthathione S-transferase), have been synthesized. The protein recognition peptoids have been conjugated to PEG (polyethylene glycol) molecules with modified end groups; an amine group on one end that allows for immobilization and orientation on the slide, and an azide group on the other end that will allow for attachment to the peptoid through “click chemistry”. The number of capture molecules printed on the slides can be increased by making the available surface area of the slide larger via coating with microspheres. We have determined that partially water soluble peptoids that are also helical, can self-assemble into microspheres. Sequences have been developed that can consistently produce uniform microsphere coatings on slides that increase the overall surface area. A high surface area corresponds to a higher number of binding sites, and therefore a more sensitive system. The work done has shown that slides may be successfully coated in order to potentially improve the detection system.

A Computational Study Of The Potential For Lng Tanker Polystyrene Foam Insulation Failure Under Fire Exposure, Jeffrey David Martinez

Graduate Theses and Dissertations

Liquefied natural gas is shipped across the oceans in large marine carriers. The carriers house the LNG using several different insulation systems. One of these systems involves large aluminum spheres insulated with polystyrene foam. Polystyrene foam is very susceptible to heat degradation. This raised issues as to the extent of possible insulation failure caused by a large ship fire. Experiments were done investigating the nature of polystyrene’s thermal degradation, notably by Brauman, Chen, and Matzinger and Butler. A large scale investigation was also performed by Sandia National Laboratory. However, computational modeling of the degradation was lacking. This work set out …

Comparison Of Low-Temperature Co-Fired Ceramic And Direct Bonded Copper For Single Ended Primary Inductance Topology, Kristopher Cody Johnson

Electrical Engineering Undergraduate Honors Theses

This work examines the thermal dissipation characteristics of Low-Temperature Co-fired Ceramic (LTCC) and Direct Bonded Copper (DBC) with the implementation of a Single Ended Primary Inductance Converter (SEPIC) topology. The advantages and disadvantages of the two substrates will be explored in addition to a description of the design and control of the SEPIC. It will be shown that the DBC implementation is superior with regards to thermal dissipation, but that LTCC has advantages in high- density packaging, RF applications, and embedded components. These substrates and converters provide many advantages in industrial applications that include automotive and grid level implementations. Additional …

Characterization Of Nano-Porous Si-Cu Composites To Enhance Lubricant Retention Impacting The Tribological Properties Of Sliding Surfaces, Julius Sheldon Morehead

Graduate Theses and Dissertations

As the expectations for modern machinery's tribological and thermal performances continue to rise, the retention of lubricant on the contact surfaces of their sliding components becomes an increasingly important issue. Friction and wear cause heat-related failures which lead to catastrophic damage to machinery. Evaporation of a lubricant's volatile constituents as well as lubricant migration leads not only to a reduction in lubricant quantity but also in its quality, thus facilitating component failures. In order to enhance component reliability, the surface should incorporate features that actively retain lubricants. The unique properties of nano-porous topographies such as their high surface area-to-volume ratio …