Biomedical Engineering and Bioengineering Commons^™

Growth Plate Regeneration Using Polymer-Based Scaffolds Releasing Growth Factor, Amanda Clark

Theses and Dissertations--Biomedical Engineering

Currently growth plate fractures account for nearly 18.5% of fractures in children and can lead to stunted bone growth or angular deformation. If the body is unable to heal itself a bony bar forms, preventing normal bone growth. Clinical treatment involves removing the bony bar and replacing it with a filler substance, which causes poor results 60% of the time.

Using primarily poly(lactic-co-glycolic acid) (PLGA) as the scaffold material, the goal was to develop an implant that would support to the implant site, allow for cell ingrowth, and degrade away over time. Porous scaffolds were fabricated from PLGA microspheres using …

Induction Of Cell Death Mechanisms And Apoptosis By Nanosecond Pulsed Electric Fields (Nspefs), Stephen J. Beebe, Nova M. Sain, Wei Ren

Bioelectrics Publications

Pulse power technology using nanosecond pulsed electric fields (nsPEFs) offers a new stimulus to modulate cell functions or induce cell death for cancer cell ablation. New data and a literature review demonstrate fundamental and basic cellular mechanisms when nsPEFs interact with cellular targets. NsPEFs supra-electroporate cells creating large numbers of nanopores in all cell membranes. While nsPEFs have multiple cellular targets, these studies show that nsPEF-induced dissipation of DeltaPsim closely parallels deterioration in cell viability. Increases in intracellular Ca2+ alone were not sufficient for cell death; however, cell death depended of the presence of Ca2+. When both events occur, cell …

A Dna Computer For Glioblastoma Multiforme Diagnosis And Drug Delivery, Sumaiya F. Hashmi

CMC Senior Theses

Glioblastoma multiforme (GBM) is a debilitating malignant brain tumor with expected patient survival of less than a year and limited responsiveness to most treatments, often requiring biopsy for diagnosis and invasive surgery for treatment. We propose a DNA computer system, consisting of input, computation, and output components, for diagnosis and treatment. The input component will detect the presence of three GBM biomarkers: vascular endothelial growth factor (VEGF), caveolin-1α (CAV), and B2 receptors. The computation component will include indicator segments for each of these genes, and ensure that output is only released if all the biomarkers are present. The output component …

Recovering Local Neural Tract Directions And Reconstructing Neural Pathways In High Angular Resolution Diffusion Mri, Ning Cao

Theses and Dissertations--Computer Science

Magnetic resonance imaging (MRI) is an imaging technique to visualize internal structures of the body. Diffusion MRI is an MRI modality that measures overall diffusion effect of molecules in vivo and non-invasively. Diffusion tensor imaging (DTI) is an extended technique of diffusion MRI. The major application of DTI is to measure the location, orientation and anisotropy of fiber tracts in white matter. It enables non-invasive investigation of major neural pathways of human brain, namely tractography. As spatial resolution of MRI is limited, it is possible that there are multiple fiber bundles within the same voxel. However, diffusion tensor model is …

Investigation Of Nanoparticle Delivery To Cancer Cells By Conjugation With Various Targeting Moieties, Leila Hossein Rashidi

Bioengineering Theses - Archive

Recently, mapping and profiling of specific tumor biomarkers characterizing cancer cells, followed by understanding of signal cascades involved in the pathogenesis of tumors (targeted therapy), as well as diagnosis in early stages, have become promising topics in cancer research. Since, the most considerable limitations of conventional therapies and diagnostic modalities are associated with nonspecific targeting; designing intelligent new anti-cancer nanocarries improved by targeting biomolecules could enhance therapeutic efficiencies as well as diagnosis in early stage of cancer. Active targeting which is based on the surface accessibility and the high level of expression of specific cancer antigens has attracted much attention …

Effect Of Body Mass Index On The Biomechanical Properties Of Anterior Vaginal Wall Tissue Of Prolapsed Patients, Sandra Gabriela Ochoa Lopez

Bioengineering Theses - Archive

Anterior Vaginal Wall (AVW) prolapse is a bothersome condition that affects thousands of women. Its onset and progression is not well understood but is thought to be multifactorial. Biomechanical properties of AVW tissue from prolapsed patients have been measured in-vitro using excised tissue specimens with great variability found in results, possibly from differences in tissue preparation, setting, preservation time, temperature, hydration, etc. In-vivo test using a BTC-2000TM cutometer-like device has recently been developed that measures the tissue uplift under suction pressure load. In this study, a systematical analysis of biomechanical property measurements from AVW tissues was done, including both in-vitro …

Measurement Of Transverse Relaxation Times Of Cerebral Metabolites In Brain Tumors, Akshay Madan

Bioengineering Theses - Archive

Proton (¹H) magnetic resonance spectroscopy (MRS) provides a non-invasive means of assessing metabolite concentration for a range of biologically important cerebral compounds in vivo. To extract quantitative information, additional data regarding proton spin relaxation phenomena is critical. Transverse relaxation times (T₂) of cellular metabolites depend on the local molecular environment in which they reside. Several neurological diseases alter the molecular environment, which may be reflected in the changes of the T₂ relaxation times. Therefore alterations in T₂ in tumors may provide important information about the local environment and a potential non-invasive diagnostic tool. Thirty-seven adult patients with gliomas and 11 …

Microfluidic Chip-Based Fabrication Of Hollow Alginate Microfiber For Enzyme Entrapment And Reaction, Uyen Hoang Thao Pham

Bioengineering Theses - Archive

This thesis demonstrates a simple process to generate alginate hollow microfibers by using a non-lithographic PDMS microfluidic device. The microfluidic device was fabricated by a novel template method in a wet lab without the support of any conventional lithography techniques. The relationships of the flow rate and the diameter of hollow alginate fibers were characterized. It was found that the outer diameter of the alginate hollow fiber was independent of the flow rate, but the core flow and sheath flow played an important role to control the internal diameter and the wall thickness of the alginate hollow microfiber. At a …

Design, Fabrication And Evaluation Of A Novel Microfluidic Based In Vitro Cell Migration Assay, Sai Sirisha Dhavala

Bioengineering Theses - Archive

Microfabrication and microfluidic devices have been recognized as potential platforms for cell-based and drug screening studies. Human glioblastoma multiforme (hGBM) cells migrate inside the central nervous system (CNS) in narrow space constrictions and rarely metastasize through bloodstream. Hence, microfluidic devices consisting of narrow channels are considered as suitable models to study cell migration in vitro. Further the migratory capability of each individual cell could be easily obtained and quantified using such system. This effort presents the design and development of an alternative microfluidic system that provides an integrated array of channels for screening multiple drugs simultaneously. This system is an …

Reliable Frontal Cortex Activity For An Oral Stroop Task Using Functional Near Infrared Spectroscopy, Matthew Allen Cloud

Bioengineering Theses - Archive

Analysis tools such as HomER and NIRS-SPM for functional Near-Infrared systems are commercially or freely available; however, they are difficult for clinicians to use as an assessment tool. One barrier to their use is the reliability of a given functional test. Intraclass correlation coefficients (ICC) provide a measure of group and individual reliability. NIRS-SPM was extended with ICC to assess a two part modified Stroop task. The protocol was repeated once every two weeks over a period of one month. Changes in neural activity attributed to inhibition of distraction, show significant covariance to the protocol with moderate to strong reliability …

Rf Breast Cancer Detection Employing A Non-Characterized Vivaldi Antenna And A Music-Inspired Algorithm, Giuseppe Ruvio, Raffaele Solimene, Antonietta D'Alterio, Max Ammann, Rocco Pierri

Articles

A novel microwave breast cancer detection system consisting of an Evolutionary Global Optimized Vivaldi antenna and an algorithm inspired by MUltiple SIgnal Classification (MUSIC) is presented. Its performance is assessed by using a simplified numerical breast phantom for a number of critical conditions including the presence of fibroglandular tissues.

Mechanisms Of Sensorimotor Impairment In Multiple Sclerosis, Matthew Cheeming Chua

Dissertations (1934 -)

Sensorimotor impairments in people with multiple sclerosis (MS) might alter coordination and balance strategy during functional movements. People with MS often have symptoms such as weakness and discoordination in the lower limbs, resulting in poor walking and balance function. This decrease in function can result in falls, decreased community activity, unemployment, and reduced quality of life. As MS is a progressive disease resulting in a range of dysfunction, the amount of lower limb impairment can cause changes to walking and balance strategies to maintain functional performance. The overall objective of this dissertation was to quantify the impairment at the hip …

Vascular Changes In Type 2 Diabetes Mellitus: Application To Restenosis After Stenting, Hongfeng Wang

Dissertations (1934 -)

Stents used to decrease cardiovascular risk in patients with type 2 diabetes mellitus (T2DM) are prone to increased rates of restenosis. The mechanisms are incompletely elucidated, but low wall shear stress (WSS) and altered intracellular signaling likely contribute. We tested the hypothesis that neointimal hyperplasia (NH) after bare-metal stenting is due to vascular remodeling (enhanced formation of advanced glycation end-products (AGEs), increased downstream vascular resistance (DVR), and decreased WSS), and that decreasing AGEs with ALT-711 (Alagebrium) mitigates this response.

Stents were implanted into the abdominal aorta of Zucker lean (ZL), obese (ZO), and diabetic (ZD) rats. After 21 days, the …

Foot And Ankle Motion Analysis Using Dynamic Radiographic Imaging, Benjamin Donald Mchenry

Dissertations (1934 -)

Lower extremity motion analysis has become a powerful tool used to assess the dynamics of both normal and pathologic gait in a variety of clinical and research settings. Early rigid representations of the foot have recently been replaced with multi-segmental models capable of estimating intra-foot motion. Current models using externally placed markers on the surface of the skin are easily implemented, but suffer from errors associated with soft tissue artifact, marker placement repeatability, and rigid segment assumptions. Models using intra-cortical bone pins circumvent these errors, but their invasive nature has limited their application to research only. Radiographic models reporting gait …

An Acoustic-Based Microfluidic Platform For Active Separation And Mixing, Myeong Chan Jo

USF Tampa Graduate Theses and Dissertations

Particle separation is of great interest to many biological and biomedical applications. Flow-based methods have been used to sort particles and cells. However, the main challenge with flow based particle separation systems is the need for a sheath flow for successful operation. Existence of the sheath liquid dilutes the analyte, necessitates precise flow control between sample and sheath flow, requires a complicated design to create sheath flow and separation efficiency depends on the sheath liquid composition. In addition, current gold standard active separation techniques are only capable of separation based on particle size; hence, separation cannot be achieved for same-size …

Fabricating And Characterizing Physical Properties Of Electrospun Polypeptide-Based Nanofibers, Dhan Bahadur Khadka

USF Tampa Graduate Theses and Dissertations

This dissertation has aimed to fabricate polypeptide based biomaterial and characterize physical properties. Electrospinning is used as a tool for the sample fabrication. Project focused on determining the feasibility of electrospinning of certain synthetic polypeptides and certain elastin-like peptides from aqueous feedstocks and to characterize physical properties of polymer aqueous solution, cast film and spun fibers and fiber mats. The research involves peptide design, polymer electrospinning, fibers crosslinking, determining the extent of crosslinking, fibers protease degradation study, fibers stability and self-organization analysis, structure and composition determination by various spectroscopy and microscopy techniques and characterization of mechanical properties of individual suspended …

Quantifying The Ergonomic Impact On Healthcare Workers Using A Needle-Free Injector Device, Humberto Jose Olivero Lara

USF Tampa Graduate Theses and Dissertations

Background: Jet injectors are advantageous over needle injectors by eliminating sharps hazards. The Government Accountability Office estimates 29% preventable sharp injuries with an estimated direct cost of more than $500 million out of the CDC's reported incidence of 385,000 needle stick injuries per year among US hospital healthcare workers. Yet the forces required to set and trigger devices using spring mechanisms for medication delivery have not been explored. This laboratory experiment measured forces exerted by healthcare workers (HCWs) using a particular jet injector approved by FDA in 2011.

Objectives: In order to quantify the ergonomic impact on HCWs using a …

Structured Materials For Catalytic And Sensing Applications, Selma Hokenek

USF Tampa Graduate Theses and Dissertations

The optical and chemical properties of the materials used in catalytic and sensing applications directly determine the characteristics of the resultant catalyst or sensor. It is well known that a catalyst needs to have high activity, selectivity, and stability to be viable in an industrial setting. The hydrogenation activity of palladium catalysts is known to be excellent, but the industrial applications are limited by the cost of obtaining catalyst in amounts large enough to make their use economical. As a result, alloying palladium with a cheaper, more widely available metal while maintaining the high catalytic activity seen in monometallic catalysts …

Studies Of Functionalized Nanoparticles For Smart Self-Assembly And As Controlled Drug Delivery, Xiaochu Ding

Dissertations, Master's Theses and Master's Reports - Open

This dissertation is related to the studies of functionalized nanoparticles for self-assembly and as controlled drug delivery system. The whole topic is composed of two parts. In the first part, the research was conducted to design and synthesize a new type of ionic peptide-functionalized copolymer conjugates for self-assembly into nanoparticle fibers and 3D scaffolds with the ability of multi-drug loading and governing the release rate of each drug for tissue engineering. The self-assembly study confirmed that such peptide-functionalized amphiphilic copolymers underwent different self-assembly behavior. The bigger nanoparticles were more easily assembled into nanoparticle fibers and 3D scaffolds with larger pore …

The Case For Interposed Abdominal Compression Cpr In Hospital Settings, Charles F. Babbs

Weldon School of Biomedical Engineering Faculty Publications

Interposed abdominal compression (IAC)-CPR includes all steps of standard external CPR with the addition of manual mid-abdominal compressions in counterpoint to the rhythm of chest compressions. IAC-CPR can increase blood flow during CPR about two fold compared to standard CPR without IAC, as shown by multiple studies in computer and animal models. The technique increases the rate return of spontaneous circulation (ROSC) for in-hospital resuscitations from roughly 25% to 50%. Improved survival to discharge is demonstrated in two in-hospital trials. IAC as an adjunct technique is quickly taught and is less complex than most other basic life support maneuvers. A …

Induced Damping And Its Relationship To Beneficial Energy Harvesting In Dielectric Elastomers With Application To Walking, Heather L. Lai

Wayne State University Dissertations

This dissertation presents a novel, interdisciplinary research which addresses the potential of applying soft polymeric materials to strategically harvest biomechanical energy in a beneficial manner for use as a viable, low power source for on-board electronics. Of particular interest are electroactive polymers (EAP), which unlike other types of electromechanical smart materials such as piezoelectric ceramics, which are often brittle, have low elastic modulus and can exhibit large strains without substantial stress generations. One type of EAP, the dielectric elastomer (DE), which utilizes electrostatic forces built up across the dielectric polymer to convert between electrical and mechanical energy, is employed in …

Visual Exploration And Information Analytics Of High-Dimensional Medical Images, Darshan Pai

Wayne State University Dissertations

Data visualization has transformed how we analyze increasingly large and complex data sets. Advanced visual tools logically represent data in a way that communicates the most important information inherent within it and culminate the analysis with an insightful conclusion. Automated analysis disciplines - such as data mining, machine learning, and statistics - have traditionally been the most dominant fields for data analysis. It has been complemented with a near-ubiquitous adoption of specialized hardware and software environments that handle the storage, retrieval, and pre- and postprocessing of digital data. The addition of interactive visualization tools allows an active human participant in …

Elucidating A Role Of Btf And Trap150 In Pre-Mrna Processing And Cell Cycle Progression, Sapna N. Varia

Browse all Theses and Dissertations

Transcription of protein-coding genes is coordinated with pre-mRNA processing as well as mRNP assembly and nuclear export in mammalian cells. In this dissertation, I examined the functions of two homologous non-classical serine-arginine-rich (SR) proteins, Btf (BCLAF1) and TRAP150 in these steps of gene regulation. Since Btf and TRAP150 share 39% sequence identity and 66% sequence similarity, I also examined whether Btf and TRAP150 have overlapping or distinct functions in pre-mRNA processing. Using two different reporter loci, I showed in-situ recruitment of Btf and TRAP150 at reporter transcription sites, and I identified both Btf and TRAP150 being associated with a core …

Differential Regulation Of The Hippocampal Taurine Transporter Protein In Rat Brain: Mechanisms Contributing To Neuronal Volume Regulation, Amanda Noelle Freeman

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Background. In osmotic edema, net efflux of taurine from neurons and accumulation by astrocytes contributes to neuronal volume regulation and astrocytic swelling. Taurine is accumulated in both cell types by a sodium- and chloride-dependent 72-75 kDa protein transporter, TauT. TauT functional activity decreases in osmotically swollen neurons but is unaltered in swollen astrocytes, in vitro. This swelling-induced downregulation of neuronal TauT activity is blocked with the tyrosine kinase (TK) inhibitor, genistein. In contrast, PKC activation has no effect on neuronal TauT, but inhibits astrocytic TauT. Thus, we hypothesize that during osmotic swelling, neuronal TauT activity is regulated by a TK …

Reactive Oxygen Modulates B Lymphocyte Function Via The Nfκb/Rel Pathway, Eric J. Romer

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Reactive Oxygen Intermediates (ROI) can significantly affect B Lymphocyte function, but the effects on key signaling pathways and gene expression in activated and non-activated B lymphocytes are largely undefined. This study demonstrates a concentration dependent effect of exogenous hydrogen peroxide on the transcriptional regulation of a 3' regulatory region of the Immunoglobulin heavy chain gene (3'IghRR). Specifically, low μM hydrogen peroxide induces an enhancing effect while higher μM hydrogen peroxide (greater than or equal to 100 μM) is suppressive. The enhancing effects of hydrogen peroxide on 3'IghRR activity are dependent on the NFκB/Rel pathway, and appear to be most prominent …

A Comprehensive Tool And Analytical Pathway For Differential Molecular Profiling And Biomarker Discovery, Claude Curtis Grigsby

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The key requirements to any empirically based study are to: (1) accurately measure and then compare the collected results in determining the result of the hypothesis being tested; and (2) collect a sample representative of the entities being studied. To demonstrate that an informatics tool can be designed that provides spectral registration, spectral and chromatographic alignment, visualization, and comparative analysis for data generated from multiple analytical platforms, e.g., LC-MS and GC-MS, the results and data analysis of five unique sets of experiments using a suite of novel informatics tools are presented. Comprehensive and reproducible sample collection techniques were developed concomitantly …

Simulating Hemodynamics In In Vitro Culture Models: Implications On Nano-Biointeractions, Monita Sharma

Browse all Theses and Dissertations

Gold nanoparticles (Au-NPs) have demonstrated great potential in the development of a variety of tools with applications ranging from biomedical to military fields. Consequently, there is increasing concern regarding the toxic potential of these nanomaterials. Biodistribution studies demonstrate clearance of Au-NPs from peripheral circulation and bulk localization primarily in the liver and spleen post- intravenous administration. Deposition of Au-NPs in spleen suggests the potential for direct exposure of immune cells to these foreign materials under relatively static conditions. Although much less, due to the Blood Brain Barrier (BBB), Au-NPs appear to also deposit in the brain, suggesting that the resident …

The Molecular Genetics Learning Progressions: Revisions And Refinements Based On Empirical Testing In Three 10th Grade Classrooms, Amber Nicole Todd

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In the past few decades, there has been a large push for increasing scientific literacy (AAAS, 1989; AAAS, 1993; Achieve, 2013; NRC, 1996; NRC, 2012), especially in areas that are rapidly advancing, like molecular genetics. Much research has been done on student understandings of molecular genetics and the consensus is that the concepts are difficult both to learn and teach (Fisher, 1992; Horwitz, 1996; Kindfield, 1992; Lewis & Kattmann, 2004; Marbach-Ad & Stavy, 2000; Stewart et al., 2005; Venville & Treagust, 1998; etc.). Two learning progressions in molecular genetics have been produced (Duncan et al., 2009; Roseman et al. 2006), …

Investigation Of The Utility Of Center Frequency In Electroencephalographic Classification Of Cognitive Workload Transitions, Jones Melissa

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Successful classification of human cognitive workload is a vital component in identifying and avoiding potential performance deficits resulting from operator work overload. Previous research suggests that electroencephalogram (EEG) derived features, including center frequency, provide a robust signal which may be used to obtain highly accurate workload classification. The purpose of this work is to investigate evidence of physiological hysteresis and determine if center frequency improves a classifier's ability to correctly identify workload level. Results confirmed that including spectral data creates the most robust feature sets, while center frequency across all bands is equally reliable for classifying workload in the case …

New Insights Into The Spinal Recurrent Inhibitory Pathway Normally And After Motoneuron Regeneration, Ahmed Zayed Obeidat

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Despite more than seven decades of intensive research, uncertainty is the hallmark of spinal recurrent inhibition. The simplest possible structure that is formed between the a-motoneuron and its inhibitory interneurons has been the subject of long lasting scientific debate. To date, there is no consensus on the functional significance of this circuit. Even the simplest assumption of a negative feedback loop does not hold true. The current work used the technique of in vivo intracellular recording from the adult rat a-motoneurons to study the normal function and the plasticity after nerve injury and regeneration of this simple, yet intricate spinal …