Biomedical Engineering and Bioengineering Commons^™

Integration Of Eeg-Fmri In An Auditory Oddball Paradigm Using Joint Independent Component Analysis, Jain Mangalathu Arumana

Dissertations (1934 -)

The integration of event-related potential (ERP) and functional magnetic resonance imaging (fMRI) can contribute to characterizing neural networks with high temporal and spatial resolution. The overall objective of this dissertation is to determine the sensitivity and limitations of joint independent component analysis (jICA) within-subject for integration of ERP and fMRI data collected simultaneously in a parametric auditory oddball paradigm. The main experimental finding in this work is that jICA revealed significantly stronger and more extensive activity in brain regions associated with the auditory P300 ERP than a P300 linear regression analysis, both at the group level and within-subject. The results …

Quantitative Biomechanical Evaluation Of Upper Extremity: Strain Behavior Of The Humerus Diaphysis Under Loading, Prateek Grover

Dissertations (1934 -)

While mechanical behavior of the adult human lower extremity long bones under loading has been studied extensively, the same is not true for the adult human humerus. Mechanical data reported for cadaveric humeri and anatomic humerus models are limited to stiffness and rigidity. Strain characteristics of the humerus diaphysis as a function of loading provide a valuable addition to the currently limited knowledge. The objective of this dissertation was to accomplish this goal, using numerical/finite element (FE) methods applied to a standard anatomic humerus model (Reference-Humerus) that was developed from the NIH Visible Human Project for this purpose. Four phases …

Real-Time Virtual Pathology Using Signal Analysis And Synthesis, Dennis L. Bergin

Computational Modeling & Simulation Engineering Theses & Dissertations

This dissertation discusses the modeling and simulation (M& S) research in the area of real-time virtual pathology using signal analysis and synthesis. The goal of this research is to contribute to the research in the M&S area of generating simulated outputs of medical diagnostics tools to supplement training of medical students with human patient role players.

To become clinically competent physicians, medical students must become skilled in the areas of doctor-patient communication, eliciting the patient's history, and performing the physical exam. The use of Standardized Patients (SPs), individuals trained to realistically portray patients, has become common practice. SPs provide the …

Development And Validation Methodology Of The Nuss Procedure Surgical Planner, Krzysztof J. Rechowicz

Computational Modeling & Simulation Engineering Theses & Dissertations

Pectus excavatum (PE) is a congenital chest wall deformity which is characterized, in most cases, by a deep depression of the sternum. A minimally invasive technique for the repair of PE (MIRPE), often referred to as the Nuss procedure, has been proven to be more advantageous than many other PE treatment techniques. The Nuss procedure consists of placement of a metal bar(s) underneath the sternum, thereby forcibly changing the geometry of the ribcage. Because of the prevalence of PE and the popularity of the Nuss procedure, the demand to perform this surgery is greater than ever. Therefore, a Nuss procedure …

Development Of In Vitro Tissue Engineered Blood Vessel Mimics In Complex Geometries For Coronary Stent Testing, Robert Dalton Chavez

Master's Theses

Coronary heart disease is the leading cause of death in the United States and occurs when plaque occludes coronary arteries. Coronary stents, which may be used to treat coronary occlusions, are small metal tubes that are implanted in coronary arteries to restore blood flow. After stent implantation, endothelial cells grow over the stent so that blood contacts the endothelial cells instead of the stent surface; this event is known as re-endothelialization. Re-endothelialization prevents blood from clotting on the stent surface and is a good predictor of stent success. Blood vessel mimics (BVMs) are in vitro tissue engineered models of human …

Characterization Of Tight Junction Formation In An In-Vitro Model Of The Blood-Brain Barrier, Michael Robert Machado

Master's Theses

Active and passive transport of substances between the microcirculation in the brain and the central nervous system is regulated by the Blood-Brain Barrier (BBB). This barrier allows for chronic and acute modulation of the CNS microenvironment, and protects the brain from potentially noxious compounds carried in the circulatory system. In-vitro modeling of the BBB has become the target of much research over the past decade, as there are many unanswered questions regarding modulations in the permeability of this barrier. Additionally, the development of a practical and inexpensive model of the BBB would facilitate a much more efficient drug development process. …

Development And Characterization Of An In-House Custom Bioreactor For The Cultivation Of A Tissue Engineered Blood-Brain Barrier, Amin Hadi Mirzaaghaeian

Master's Theses

The development of treatments for neurological disorders such as Alzheimer’s and Parkinson’s disease begins by understanding what these diseases affect and the consequences of further manifestation. One particular region where these diseases can produce substantial problems is the blood-brain barrier (BBB). The BBB is the selective diffusion barrier between the circulating blood and the brain. The barrier’s main function is to maintain CNS homeostasis and protect the brain from the extracellular environment. The progression of BBB research has advanced to the point where many have modeled the BBB in vitro with aims of further characterizing and testing the barrier. Particularly, …

Identification Of Hemodynamically Optimal Coronary Stent Designs Based On Vessel Caliber, Timothy J. Gundert, Alison L. Marsden, Weiguang Yang, David S. Marks, John F. Ladisa

Biomedical Engineering Faculty Research and Publications

Coronary stent design influences local patterns of wall shear stress (WSS) that are associated with neointimal growth, restenosis, and the endothelialization of stent struts. The number of circumferentially repeating crowns N_C for a given stent de- sign is often modified depending on the target vessel caliber, but the hemodynamic implications of altering N_C have not previously been studied. In this investigation, we analyzed the relationship between vessel diameter and the hemodynamically optimal N_C using a derivative-free optimization algorithm coupled with computational fluid dynamics. The algorithm computed the optimal vessel diameter, defined as minimizing the area of stent-induced …

Examining Lower Extremity Motor Activity Using Magnetoencephalography, Ruth M. Swedler

Master's Theses (2009 -)

The role of the cortex during locomotion remains unclear, but recent advances in neural imaging technologies have aided in developing ways to measure brain activity during motor tasks. One method is by measuring activations produced by neural oscillations which have been associated with a variety of human behaviors, from sleep and rest to cognitive actions and movement. The physiological and functional methods in which oscillations contribute to cortical control are still largely unknown. In this study, we aim to expand that knowledge by examining human cortical activity in the sensory and motor cortices during pedaling using magnetoencephalography (MEG). We hypothesized …

Summer 2012 Biomedical Engineering Newsletter, Department Of Biomedical Engineering, Michigan Technological University

Department of Biomedical Engineering Newsletters

Table of Contents

• Dr. Jeremy Goldman wins a Fulbright Scholarship
• Research updates
• Hal Holmes named Goldwater Scholar
• Top honors at the Undergraduate Expo

Propagation Of Ultrasound Through Freshly Excised Human Calvarium, Armando Garcia Noguera

Department of Engineering Mechanics: Dissertations, Theses, and Student Research

The propagation of ultrasound through complex biological media, such as the human calvarium, poses a great challenge for modern medicine. Several ultrasonic techniques commonly used for treatment and diagnosis in most of the human body are still difficult to apply to the human brain, in part, because of the properties of the skull. Moreover, an understanding of the biomechanics of transcranial ultrasound may provide needed insight into the problem of blast wave induced traumatic brain injury (TBI). In the present study, the spatial variability of ultrasonic properties was evaluated for relevant frequencies of 0.5, 1, and 2.25 MHz. A total …

Evaluation Of Autonomous Robotic Milling Methodology For Natural Tooth-Shaped Implants Based On Sko Optimization, Yongki Yoon

Mechanical & Aerospace Engineering Theses & Dissertations

Robotic surgery is one of the most demanding and challenging applications in the field of automatic control. One of the conventional surgeries, the dental implantation, is the standard methodology to place the artificial tooth root composed of titanium material into the upper or lower jawbone. During the dental implant surgery, mechanical removal of the bone material is the most critical procedure because it may affect the patient's safety including damage to the mandibular canal nerve and/or piercing the maxillary sinus. With this problem, even though short term survival rates are greater than 95%, long term success rate of the surgery …

Adaptive Optics Scanning Ophthalmoscopy With Annular Pupils, Yusufu N. Sulai, Alfredo Dubra

Biomedical Engineering Faculty Research and Publications

Annular apodization of the illumination and/or imaging pupils of an adaptive optics scanning light ophthalmoscope (AOSLO) for improving transverse resolution was evaluated using three different normalized inner radii (0.26, 0.39 and 0.52). In vivo imaging of the human photoreceptor mosaic at 0.5 and 10° from fixation indicates that the use of an annular illumination pupil and a circular imaging pupil provides the most benefit of all configurations when using a one Airy disk diameter pinhole, in agreement with the paraxial confocal microscopy theory. Annular illumination pupils with 0.26 and 0.39 normalized inner radii performed best in terms of the narrowing …

Towards Omni-Tomography -- Grand Fusion Of Multiple Modalities For Simultaneous Interior Tomography, Ge Wang, Jie Zhang, Hao Gao, Victor Weir, Hengyong Yu, Wenxiang Cong, Xiaochen Xu, Haiou Shen, James Bennett, Mark Furth, Yue Wang, Michael Vannier

Radiology Faculty Publications

We recently elevated interior tomography from its origin in computed tomography (CT) to a general tomographic principle, and proved its validity for other tomographic modalities including SPECT, MRI, and others. Here we propose "omni-tomography", a novel concept for the grand fusion of multiple tomographic modalities for simultaneous data acquisition in a region of interest (ROI). Omni-tomography can be instrumental when physiological processes under investigation are multi-dimensional, multi-scale, multi-temporal and multi-parametric. Both preclinical and clinical studies now depend on in vivo tomography, often requiring separate evaluations by different imaging modalities. Over the past decade, two approaches have been used for multimodality …

Examination Of The Migratory Potential Of Patterned Cortical Neurons Using Laser Direct-Write, T. B. Phamduy, C. J. Rivet, D. Kingsley, R. J. Gilbert, D. B. Chrisey

Chemical and Biochemical Engineering Faculty Research & Creative Works

We describe the patterning of neuronal cultures by a laser-based printing system. Embryonic chick cortical neurons were transferred into predetermined array positions with micron accuracy, enabling detailed study of neuronal migration, aggregation, and neurite outgrowth regulated by cell-cell interactions on a homogeneous surface. Images of cells were analyzed up to 14 days. Results demonstrated that increasing the spacing between neighboring groups of cells causes intra-group cells to preferentially migrate towards each other and aggregate towards the center of the printed 'spot'. In addition, increasing the printed 'spot' size encouraged migration towards neighboring groups of cells. © 2012 IEEE.

The Structural Characterization Of Ga 2o 3-Na 2o-Cao-Zno-Sio 2 Bioactive Glasses, T. J. Keenan, A. W. Wren, A. Coughlan, M. M. Hall, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

The characterization of bioactive glasses in which zinc (Zn) has been incrementally replaced by gallium (Ga). © 2012 IEEE.

Silver Coated Bioactive Glass Particles For Wound Healing Applications, P. Hassanzadeh, A. W. Wren, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

Hench and colleagues discovered that bone could bond chemically to certain glass compositions in 1969 [1]. This group of glasses is known as bioactive glasses [1]. Some special compositions of bioactive glasses will bond to soft tissues as well as bone [1]. One of the important characteristics of bioactive glasses is their ability to release beneficial ions such as Ca²⁺, Na⁺, Zn²⁺, Sr²⁺, and PO 43- in the body, which promote self-healing [2]. Bioactive glasses generally contain much less glass former (e.g., SiO₂, B₂O₃ etc.) than conventional …

Increasing The Quantity Of Silver In Zinc-Based Glass Polyalkenoate Cement: Is There An Improvement In Antibacterial Efficacy?, A. Coughlan, S. M. Breed, C. Ashraf, J. A. Cardinale, M. M. Hall, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

Bone cements should have the ability to chemically bond to both bone and surgical metals, exhibit no chemical or thermal necrosis, and have no significant shrinkage or exotherm upon setting. Taking these properties into consideration, glass polyalkenoate cements (GPCs) have potential as bone cements. GPCs are formed by the reaction between an ion-leachable glass and an aqueous solution of polyacrylic acid (PAA) [1] and have proven antibacterial and cariostatic properties [2], which are related to their ability to release beneficial amounts of ions over time [3, 4]. The GPCs can be formulated to release ions that can have a therapeutic …

Gallium Containing Glass Polyalkenoate Bone Cements: Glass Characterization And Physical Properties, L. Placek, A. W. Wren, A. Coughlan, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

Gallium (Ga) glasses were developed to formulate a Glass Polyalkenoate Cement (GPC) series with both E9 and E11 polyacrylic acid (PAA) at 50, 55 and 60wt% additions. Working times (T w), setting times (T s), compression (σ c), and biaxial flexural (σ f) strength testing were evaluated to determine the GPCs potential use in orthopedics. © 2012 IEEE.

A Wireless And Digital Electrode Bus Topology For Biopotential Measurement, Mark Nolan, Edward Burke, Eugene Coyle

Conference Papers

The conventional biopotential measurement configuration utilises long lead wires which connect measuring electrodes to signal conditioning circuitry. The majority of bioelectric signals that are measured from the human body have a tiny signal amplitude (5µV-5mV range) and thus any interference that is induced on the lead wires can have a detrimental effect on the original signal. In this paper, we present an alternative configuration, in which digitisation occurs on the electrode, potentially providing enhanced signal measurement as well as significant benefits in terms of the simplification of the physical interconnections between electrodes. Multiple electrodes are combined to form a digital …

Ethanol And Anaerobic Conditions Reversibly Inhibit Commercial Cellulase Activity In Thermophilic Simultaneous Saccharification And Fermentation (Tssf), Kara K. Podkaminer, William R. Kenealy, Christopher D. Herring, David A. Hogsett, Lee R. Lynd

Dartmouth Scholarship

A previously developed mathematical model of low solids thermophilic simultaneous saccharification and fermentation (tSSF) with Avicel was unable to predict performance at high solids using a commercial cellulase preparation (Spezyme CP) and the high ethanol yield Thermoanaerobacterium saccharolyticum strain ALK2. The observed hydrolysis proceeded more slowly than predicted at solids concentrations greater than 50 g/L Avicel. Factors responsible for this inaccuracy were investigated in this study.

13c Metabolic Flux Analysis Of Cho Cells With Parallel Labeling Experiments, Maciek Antoniewicz

Metabolic Engineering IX

No abstract provided.

In-Cell Enzymatic Glycosylation: A Way To Improve Productivity Of Heterologous Biosynthesis Pathways In Micro-Organism, Esben Hansen

Metabolic Engineering IX

No abstract provided.

Towards Sustainable Nylon-6: Fermentative Production Of 6-Aminocaproic Acid, Stefan Turk, Axel Trefzer, Elly Raemakers, Lian Wu, Monika Müller, Margarita Temudo, Henk Noorman

Metabolic Engineering IX

No abstract provided.

Engineering Of Metabolic Pathways And Global Regulators Of Yarrowia Lipolytica To Produce High Value Commercial Products, Ethal Jackson

Metabolic Engineering IX

No abstract provided.

Synthetic Control Of Transcription: From Hybrid Promoters To Promoter Engineering To Synthetic Operon Design, Hal Alper

Metabolic Engineering IX

No abstract provided.

Sustainable Production Of Industrial Chemicals Using Microbial Biocatalysts: 1,4-Butanediol, Mark Burk

Metabolic Engineering IX

No abstract provided.

Pathway Engineering Via Synthetic Biology, Huimin Zhao

Metabolic Engineering IX

No abstract provided.

Structure-Based Metabolic Engineering And Synthetic Biology For Efficient Strain Development, An Ping Zeng

Metabolic Engineering IX

No abstract provided.

Monitoring Intracellular Concentrations Of Small Molecules, Lothar Eggeling

Metabolic Engineering IX

No abstract provided.