Biomedical Engineering and Bioengineering Commons^™

Immunohistochemical Mapping Of Hypoxia In Ischemic Mouse Hindlimb Skeletal Muscle, Emily Deckert

Biomedical Engineering

The study of blood vessel growth and remodeling is a complex endeavor. Hypoxia, the lack of oxygen in a tissue, is known to stimulate angiogenesis (the growth of new blood vessels), and have little effect on arteriogenesis (the enlargement of existing blood vessels). However, the role of hypoxia in vessel function is unknown, but may be determined using the results and methods developed in this experiment.

Supplied by the bloodstream, oxygen is required by all cells and tissues to remain healthy. If the bloodstream supplying a certain tissue with blood is disrupted, the tissue becomes ischemic, often leading to hypoxia. …

Development Of Tissue Engineered Test Systems To Study Mammary Cell Interactions In Vitro, Cheryl Cass

All Dissertations

The work described in this dissertation was conducted in the interdisciplinary research environment of the Clemson University Institute for Biological Interfaces of Engineering. A note at the beginning of each chapter acknowledges, as relevant, collaborating doctoral students and reminds the reader where work from each chapter has been presented or published. The overall goal of this work was to develop tissue engineered test system methodologies to allow the study of mammary cell interactions in vitro. The background, as described in Chapter 1, was published in part in Philosophical Transactions of the Royal Society A in 2010. The studies were designed …

A Spectroscopic Investigation Into The Setting And Mechanical Properties Of Titanium Containing Glass Polyalkenoate Cements, A. W. Wren, A. Kidari, N. M. Cummins, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

Titanium (Ti) implants are extensively used in a number of biomedical and dental applications. This work introduces Ti into the glass phase of a zinc-based glass polyalkenoate cement (GPC) and investigates changes in handling and mechanical properties considering two molecular weight polyacrylic acids (PAA), E9 and E11. Considering the handling properties, the working time (T_w) increased from 50 s_E9, 32 s_E11 (BT 101, Ti-free) to 169 s_E9, 74 s_E11 with TW-Z (highest Ti content), respectively. The setting time (T_s) increased from 76 s_E9, 47 s_E11 (BT 101) …

Evaluation Of Ethanol And Water Introduction Via Fumigation On Efficiency And Emissions Of A Compression Ignition Engine Using An Atomization Technique, Grant S. Janousek

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Performance of a diesel engine, equipped for ethanol and water fumigation, was studied. The method implemented allowed for non-destructive introduction of liquids in advance of the turbocharger. Engine torque, speed, emission components, diesel and ethanol fuel rates were recorded and analyzed for each mixture of inputs. Based on the results of the study, thermal efficiency was not significantly different from the baseline diesel performance when using several ethanol and water mixtures. On the other hand, ethanol fumigation caused a significant reduction in NOx emissions and an increase in HC and CO emissions. No significant changes in CO2 or O2 occurred.

Local Hemodynamic Changes Caused By Main Branch Stent Implantation And Subsequent Side Branch Balloon Angioplasty In A Representative Coronary Bifurcation, Andrew R. Williams, Bon-Kwon Koo, Timothy J. Gundert, Peter J. Fitzgerald, John F. Ladisa Jr.

Biomedical Engineering Faculty Research and Publications

Abnormal blood flow patterns promoting inflammation, cellular proliferation, and thrombosis may be established by local changes in vessel geometry after stent implantation in bifurcation lesions. Our objective was to quantify altered hemodynamics due to main vessel (MV) stenting and subsequent virtual side branch (SB) angioplasty in a coronary bifurcation by using computational fluid dynamics (CFD) analysis. CFD models were generated from representative vascular dimensions and intravascular ultrasound images. Time-averaged wall shear stress (TAWSS), oscillatory shear index (OSI), and fractional flow reserve (FFR) were quantified. None of the luminal surface was exposed to low TAWSS (/cm2) in the nondiseased bifurcation model. …

Eye Movements In Elite Athletes - An Index For Performance., Harshad Hegde

Theses and Dissertations

Introduction: In gymnastics, athletes perform twisting and flipping skills at high angular velocities. These athletes rely heavily on sensory information from the visual, proprioceptive, and vestibular systems. The vestibulo-ocular reflex (VOR) is responsible for stabilizing the visual field on the retina during head movement. To accomplish this, the eyes are reflexively moved in a direction opposite the head. In a twisting gymnast, this actually reduces the ability of gymnasts to see the landing during airborne skills. Hence it becomes necessary for the gymnasts to cancel or suppress their VOR in order to view the landing. Objective: The purpose of this …

Effect Of Mechanical Stimulation On Mesenchymal Stem Cell Seeded Cartilage Constructs, Karin Wartella

Theses and Dissertations

Cartilage tissue engineered constructs using mesenchymal stem cells were stimulated with 3 different stimulation algorithms to achieve characteristics mimicking the superficial tangential zone of articular cartilage. The stimulation algorithm of both compression and tension without an offset had the best properties out of all the evaluated groups.

Synthesis And Characterization Of A Novel Amphiphilic Core-Corona Hyperbranched Polymer, Composed Of Ehmo And Ehmopeg, For Drug Delivery., Khushboo Sharma

Theses and Dissertations

A novel amphiphilic core-corona hyperbranched polymer, composed of 3-ethyl-3-(hydroxylmethyl) oxetane (EHMO) and PEGylated EHMO (EHMOPEG), was synthesized through cationic ring opening polymerization. Nuclear Magnetic Resonance spectroscopy (NMR), Dynamic Light Scattering (DLS), and Fourier Transform Infrared spectroscopy (FTIR) were used to characterize the polymer structure and degree of branching. It was found that the degree of branching (DOB) of the polymer was affected by the weight % ratios of EHMO/EHMOPEG used in polymerization. As the weight % ratio of EHMO/ EHMOPEG decreased, the DOB was observed to increase. Polymeric particles based on the synthesized polymer were prepared using the O/W (Oil …

Characterizing Accuracy Of Total Hemoglobin Recovery Using Contrast-Detail Analysis In 3d Image-Guided Near Infrared Spectroscopy With The Boundary Element Method, Hamid R. Ghadyani, Subhadra Srinivasan, Brian W. Pogue, Keith D. Paulsen

Dartmouth Scholarship

The quantification of total hemoglobin concentration (HbT) obtained from multi-modality image-guided near infrared spectroscopy (IG-NIRS) was characterized using the boundary element method (BEM) for 3D image reconstruction. Multi-modality IG-NIRS systems use a priori information to guide the reconstruction process. While this has been shown to improve resolution, the effect on quantitative accuracy is unclear. Here, through systematic contrast-detail analysis, the fidelity of IG-NIRS in quantifying HbT was examined using 3D simulations. These simulations show that HbT could be recovered for medium sized (20mm in 100mm total diameter) spherical inclusions with an average error of 15%, for the physiologically …

Investigation Of Buildup Dose For Therapeutic Intensity Modulated Photon Beams In Radiation Therapy, Khosrow Javedan

USF Tampa Graduate Theses and Dissertations

Buildup dose of Mega Voltage (MV) photon beams can be a limiting factor in intensitymodulated radiation therapy (IMRT) treatments. Excessive doses can cause patient discomfort and treatment interruptions, while underdosing may lead to local failure.

Many factors which contribute to buildup dose, including the photon beam energy spectrum, scattered or contaminant radiation and their angular distribution, are not modeled well in commercial treatment planning systems. The accurate Monte Carlo method was employed in the studies to estimate the doses.

Buildup dose of 6MV photon beams was investigated for three fundamentally different IMRT modalities: between Helical TomoTherapy and traditional opposed tangential …

Application Of A Bayesian Inference Method To Reconstruct Short-Range Atmospheric Dispersion Events, Inanc Senocak

Mechanical and Biomedical Engineering Faculty Publications and Presentations

In the event of an accidental or intentional release of chemical or biological (CB) agents into the atmosphere, first responders and decision makers need to rapidly locate and characterize the source of dispersion events using limited information from sensor networks. In this study the stochastic event reconstruction tool (SERT) is applied to a subset of the Fusing Sensor Information from Observing Networks (FUSION) Field Trial 2007 (FFT 07) database. The inference in SERT is based on Bayesian inference with Markov chain Monte Carlo (MCMC) sampling. SERT adopts a probability model that takes into account both positive and zero-reading sensors. In …

Department Of Biological Systems Engineering Newsletter, Volume 6, Number 2, July 2010

BSE Department Magazine

No abstract provided.

Modeling And Its Numerical Method For Micro-Scaled Diffusion -Reaction Systems In The Neuromuscular Junction, Abdul Khaliq

Doctoral Dissertations

The main subject of this research is the neuromuscular junction (NMJ). The NMJ is a biological structure composed of the interface between a neuron and a muscle cell. Currently, there is not a fully three dimensional model of diffusion-reaction processes occurring in the NMJ. Developing a useful predictive model of this structure will assist in the therapeutic efforts to restore and rehabilitate NMJ function to humans and in developing strategies to prevent damage to the NMJ. This research work developed 1D mass transport and full 3D reaction diffusion models. A new finite difference scheme is presented for solving 1D mass …

In Vivo Non-Invasive Monitoring Of Optically Resonant Metal Nanoparticles Using Multi-Wavelength Photoplethysmography, Gregory J. Michalak

Doctoral Dissertations

Nanotechnology has recently emerged as a powerful modality in many biomedical applications. In particular, several classes of nanoparticles have been employed as cancer therapy and imaging contrast agents. These particles can have architecture of varying complexity, depending on their specific application. These complex architectures are achieved by various chemical techniques usually performed in specific sequences to add complexity and functionality. One such class of nanoparticle, used in tumor treatment and as contrast agents in several optical imaging techniques, is the plasmon resonant metal nanoparticle. The most common metal used for these particles is gold because of its biocompatibility, lack of …

Informatics And Natural Computation: Final Report, Francis T. Marchese

Cornerstone 3 Reports : Interdisciplinary Informatics

The purpose of this grant is to develop an interdisciplinary course in Informatics and Natural Computation that would service undergraduate computer, natural, and physical science majors. Informatics is the science of information, the practice of information processing, and the engineering of information systems. Informatics studies the structure, algorithms, behavior, and interactions of natural and artificial systems that store, process, access and communicate information. Natural computing refers to a collection of disciplines that unite nature with computing in three distinct ways:

1. Nature serves as a source of inspiration for the development of computational tools or systems that are used for …

Implementation Of Physiologic Pressure Conditions In A Blood Vessel Mimic Bioreactor System, Kevin Mark Okarski

Master's Theses

ABSTRACT

Implementation of Physiologic Pressure Conditions in a Blood Vessel Mimic Bioreactor System

Kevin Mark Okarski

Tissue engineering has traditionally been pursued as a therapeutic science intended for restoring or replacing diseased or damaged biologic tissues or organs. Cal Poly’s Blood Vessel Mimic Laboratory is developing a novel application of tissue engineering as a tool for the preclinical evaluation of intravascular devices. The blood vessel mimic (BVM) system has been previously used to assess the tissue response to deployed stents, but under non-physiologic conditions. Since then, efforts have been made to improve the vessel and bioreactor’s ability to emulate in …

Visual, Motor And Attentional Influences On Proprioceptive Contributions To Perception Of Hand Path Rectilinearity During Reaching, Robert A. Scheidt, Kyle P. Lillis, Scott J. Emerson

Biomedical Engineering Faculty Research and Publications

We examined how proprioceptive contributions to perception of hand path straightness are influenced by visual, motor and attentional sources of performance variability during horizontal planar reaching. Subjects held the handle of a robot that constrained goal-directed movements of the hand to the paths of controlled curvature. Subjects attempted to detect the presence of hand path curvature during both active (subject driven) and passive (robot driven) movements that either required active muscle force production or not. Subjects were less able to discriminate curved from straight paths when actively reaching for a target versus when the robot moved their hand through the …

Development Of Experimental Methods To Assess Adsorption Free Energy For Peptide-Surface Interactions, Yang Wei

All Dissertations

Because of its governing role in cellular response to implants and substrates for biomedical applications, the understanding and control of protein adsorption to material surfaces has been one of the major topics of research in the field of biomaterials. Unfortunately, it has proven to be extremely difficult to quantitatively understand and control these types of interactions because of the complexities involved, and existing methods that have been developed and used to characterize protein-surface interactions have proved to be inadequate to provide the level of detail necessary to achieve this understanding. New, more fundamental methods, both experimental and computational, are needed …

Simulation Studies Of Pulsed Voltage Effects On Cells, Jiahui Song

Electrical & Computer Engineering Theses & Dissertations

This dissertation research focuses on the new field of pulsed electric field interactions with biological cells. In particular, "Intracellular Electromanipulation" which has important biomedical applications, is probed. Among the various aspects studied, nanosecond, high-intensity pulse induced electroporation is one phenomena. It is simulated based on a coupled scheme involving the current continuity and Smoluchowski equations. A dynamic pore model can be achieved by including a dependence on the pore population density and a variable membrane tension. These changes make the pore formation energy E(r) self-adjusting and dynamic in response to pore formation. Additionally, molecular dynamics (MD) simulations are also discussed …

The Effect Of Adding Organic Polymers On The Handling Properties, Strengths And Bioactivity Of A Ca-Sr-Zn-Si Glass Polyalkenoate Cement, A. W. Wren, N. M. Cummins, A. Coughlan, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

This work demonstrates the addition of a number of naturally occurring proteins/polymers to a zinc-based glass polyalkenoate cements (GPCs). Chitin (Chi.), collagen (Col.), cysteine (Cys.) and keratin (Ker.) were added with the intention of improving the bioactivity of this cement. Initial testing involved characterization of the glass with X-ray diffraction (XRD) and differential thermal analysis (DTA) before and after sterilization with γ-irradiation. No significant changes occurred as a result of sterilization. Handling properties of the modified cements were not significantly different from those of the control, BT 101 (Working T_w-36_s, and setting time T_s-70 …

Image-Based Quantification Workflow For Coronary Morphology: A Tool For Use In Next-Generation Bifurcation Stent Design, Sara Marie Nomeland

Master's Theses (2009 -)

Coronary artery disease (CAD) occurs in ~200,000 bifurcation lesions annually. Treatment of CAD near bends and bifurcations is challenging and a preferred strategy for bifurcation lesions has yet to be established. However, a favorable treatment option may be elucidated by a more thorough understanding of vessel morphology as well as local hemodynamic alterations caused by current stenting approaches. Computational modeling of human arteries offers an attractive way to investigate the relationships between geometry, hemodynamics and vascular disease. Recent developments also make it possible to perform analysis on realistic geometries acquired noninvasively.

The objective of this work was twofold. The first …

Securing Foreign Oil: A Case For Including Military Operations In The Climate Change Impact Of Fuels, Adam J. Liska, Richard K. Perrin

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Military operations are major industrial activities that use massive amounts of fuel and materials that significantly contribute to climate change. In this article, we assert that military activity to protect international oil trade is a direct production component for importing foreign oil— as necessary for imports as are pipelines and supertankers—and therefore the greenhouse gas (GHG) emissions from that military activity are relevant to U.S. fuel policies related to climate change. Military security for protection of global maritime petroleum distribution is part of the acquisition process, but in addition, recent Middle Eastern wars may also be related to securing petroleum …

Simulation Of Temperature Distributions In Tissue Upon Laser Pulse Irradiation Including Water Mass Transfer, Deepthi Nagulapally

Electrical & Computer Engineering Theses & Dissertations

Lasers, due to their unique characteristics, have tremendous applications in the medical field. Generally all laser applications in hie-medicine involve the propagation of laser energy through tissue. Energy is deposited giving rise to many physical, hie-chemical, and mechanical effects. Among these are dynamical changes in the local temperature distributions within the tissue. Analysis of the temperature changes requires the creation of an appropriate optical transmission and heat flow model that incorporates user specified laser parameters. Here, a numerical simulation model was developed to study both steady state and time dependent temperature distributions due to pulsed laser radiation within user specified …

Synthesis, Characterization, And Self-Assembly Of Gold Nanorods And Nanoprisms, Kristina L. Tran

USF Tampa Graduate Theses and Dissertations

The unique properties of gold nanoparticles make them excellent candidates for applications in electronics, sensing, imaging, and photothermal therapy. Though abundant literature exists for isotropic gold nanoparticles, work on nanoparticles of different shapes has been gaining interest recently. Anisotropic gold nanoparticles, such as nanorods and nanoprisms, have tunable optical properties in the visible and near-infrared regions. Through synthesis and surface modification, the production of various shapes of these gold nanoparticles can be controlled to meet different applications.

Two different types of gold nanorods were used in this thesis. The first type was stabilized with cetyltrimethylammonium bromide (CTAB) and had aspect …

Intelligibility Of Electrolarynx Speech Using A Novel Actuator, Brian Madden, Mark Nolan, Ted Burke, James Condron, Eugene Coyle

Conference Papers

During voiced speech, the larynx provides quasi-periodic acoustic excitation of the vocal tract. Following a laryngectomy, some people speak using an electrolarynx which replaces the excitatory function of the absent larynx. Drawbacks of conventional electrolarynx designs include the buzzing monotonic sound emitted, the need for a free hand to operate the device, and difficulty experienced by many laryngectomees in adapting to its use. Despite these shortcomings, it remains the preferred method of speech rehabilitation for a substantial minority of laryngectomees. In most electrolarynxes, mechanical vibrations are produced by a linear electromechanical actuator, the armature of which percusses against a metal …

Ultrasound Transient Shear Wave Elasticity Imaging For Tendon Tissue, Pengfei Song

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Degeneration of tendon tissue is a common cause of tendon dysfunction with the symptoms of repeated episodes of pain and palpable increase of tendon thickness. Tendon mechanical properties are directly related to its physiological composition and the structural organization of the interior collagen fibers which could be altered by tendon degeneration due to overuse or injury. Thus, measuring mechanical properties of tendon tissue may represent a quantitative measurement of pain, reduced function, and tissue health. Ultrasound elasticity imaging has been developed in the last two decades and has proved to be a promising tool for tissue elasticity imaging. To date, …

A Full-Range, Multi-Variable, Cfd-Based Methodology To Identify Abnormal Near-Wall Hemodynamics In A Stented Coronary Artery, Jonathan Murphy, Fergal Boyle

Articles

The benefit of coronary stent implantation is reduced by excessive intimal hyperplasia which re-narrows the artery and the prevention of which is still a primary concern for clinicians. Abnormal hemodynamics create non-physiological viscous stress on the artery wall, one of the root causes of intimal hyperplasia following stent implantation. A methodology to comprehensively evaluate the viscous stress on the artery wall following stent implantation would be useful to evaluate a stent’s hemodynamic performance. The proposed methodology employs 3D computational fluid dynamics, the variables wall shear stress (WSS), WSS gradient (WSSG), WSS angle gradient (WSSAG) and a statistical analysis to evaluate …

Cell Culture Method And Apparatus For Mechanically Stimulating Cells, Seth W. Donahue

Michigan Tech Patents

A cell culture assembly and a method for culturing cells that provide mechanical stimulation to cells. The cell culture assembly can include a flow chamber positioned in a fluid path and a support comprising cells positioned within the flow chamber to expose the cells to the fluid path. The cell culture assembly can further include a means for producing a steady flow of fluid in the fluid path, and a means for producing an oscillatory flow of fluid in the fluid path simultaneously with producing the steady flow of fluid in the fluid path to mechanically stimulate the cells. The …

A Comparative Analysis Of Methods For Baseline Drift Removal In Preterm Infant Respiration Signals, Pallavi Ramnarain

Theses and Dissertations

Breathing is a vital function intrinsic to the survival of any human being. In preterm infants it is an important indicator of maturation and feeding competency, which is a hallmark for hospital release. The recommended method of measurement of infant respiration is the use of thermistors. Accurate event detection within thermistor generated signals relies heavily upon effective noise reduction, specifically baseline drift removal. Baseline drift originates from several sensor-based factors, including thermistor placement within the sensor and in relation to the infant nares. This work compares four methods for baseline drift removal using the same event detection algorithm. The methods …

Escherichia Coli Plasmid Dna Fermentation: Strain And Process-Specific Effects On Vector Yield, Quality, And Transgene Expression, Aaron E. Carnes, Jeremy Luke, Justin Vincent, Clague Hodgson, James Williams

Vaccine Technology III

To commercialize DNA medicines, industrial plasmid DNA manufacturing processes are needed which meet the quality, economy, and scale requirements projected for future products. NTC has developed an inducible fed-batch fermentation process that incorporates novel cell bank and fermentation process innovations that reduce plasmid mediated metabolic burden. This process also incorporates a scalable plasmid induction profile that, in combination with vector backbone modifications that double fermentation productivity compared to existing high copy vectors such as pVAX1 and gWIZ, form a generic plasmid DNA production platform driving high plasmid yields up to 2.6 g/L, with specific yields of 5% of total dry …