Biomedical Engineering and Bioengineering Commons^™

Processing Time, Temperature, And Initial Chemical Composition Prediction From Materials Microstructure By Deep Network For Multiple Inputs And Fused Data, Amir Abbas Kazemzadeh Farizhandi, Mahmood Mamivand

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Prediction of the chemical composition and processing history from microstructure morphology can help in material inverse design. In this work, we propose a fused-data deep learning framework that can predict the processing history of a microstructure. We used the Fe-Cr-Co alloys as a model material. The developed framework is able to predict the heat treatment time, temperature, and initial chemical compositions by reading the morphology of Fe distribution and its concentration. The results show that the trained deep neural network has the highest accuracy for chemistry and then time and temperature. We identified two scenarios for inaccurate predictions; 1) There …

Effects Of Weight-Bearing On Tibiofemoral, Patellofemoral, And Patellar Tendon Kinematics In Older Adults, Vasiliki Kefala, Azhar A. Ali, Landon D. Hamilton, Erin M. Mannen, Kevin B. Shelburne

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Quantification of natural knee kinematics is essential for the assessment of joint function in the diagnosis of pathologies. Combined measurements of tibiofemoral and patellofemoral joint kinematics are necessary because knee pathologies, such as progression of osteoarthritis and patellar instability, are a frequent concern in both articulations. Combined measurement of tibiofemoral and patellofemoral kinematics also enables calculation of important quantities, specifically patellar tendon angle, which partly determines the loading vector at the tibiofemoral joint and patellar tendon moment arm. The goals of this research were to measure the differences in tibiofemoral and patellofemoral kinematics, patellar tendon angle (PTA), and patellar tendon …

Deep Learning Approach For Chemistry And Processing History Prediction From Materials Microstructure, Amir Abbas Kazemzadeh Farizhandi, Omar Betancourt, Mahmood Mamivand

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Finding the chemical composition and processing history from a microstructure morphology for heterogeneous materials is desired in many applications. While the simulation methods based on physical concepts such as the phase-field method can predict the spatio-temporal evolution of the materials’ microstructure, they are not efficient techniques for predicting processing and chemistry if a specific morphology is desired. In this study, we propose a framework based on a deep learning approach that enables us to predict the chemistry and processing history just by reading the morphological distribution of one element. As a case study, we used a dataset from spinodal decomposition …

Bimodal Particle Distributions With Increased Thermal Conductivity For Solid Particles As Heat Transfer Media And Storage Materials, Chase E. Christen, Jesús Gómez-Hernández, Todd P. Otanicar

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Solid particles are being considered in several high temperature thermal energy storage systems and as heat transfer media in a variety of advanced power generation systems, particularly in concentrated solar power plants. The downside of such an approach is the low overall heat transfer coefficients caused by the inherently low thermal conductivity values of the low-cost solid media when coupled to heat exchanger for the power cycle working fluid. Choosing the right particle size distribution, emittance, and material of the solid media can all make a substantial difference in packed bed thermal conductivity. Current research though exclusively focuses on continuous …

Auto-Ethnographic Reflections: Lessons From Leading A Stem Initiative For Girls In School While We Ourselves Were In School, Kayli Heather Battel, Kritin Mandala, Sreyoshi Bhaduri, Natalie Anna Foster, Lilianny Virguez, Lissa Erickson, Krishna Pakala

Mechanical and Biomedical Engineering Faculty Publications and Presentations

In this paper, we use an auto-ethnographic approach to describe first-hand the reflections and learnings from leading an organization to help school children, especially girls, familiarize themselves with STEM and Cyber Security. The primary authors and ethnographers are founders of STEM initiatives for young learners. The primary author is a recent high school graduate who has taken up an engineering field, and two other contributing authors are high-schoolers currently leading these initiatives. With help from the three engineering educators on our authorship team, we use our individual self-narratives to develop a set of recommendations for other young engineering educators across …

Opportunities From Disruption: How Lifelong Learning Helped Create More Connected Classrooms, Krishna Pakala, Sreyoshi Bhaduri

Mechanical and Biomedical Engineering Faculty Publications and Presentations

The coronavirus pandemic has led to instructors worldwide seeking ways to engage students better through virtual platforms. As the world interacts online, more than ever before, this paper reflects on an educator’s experience with the virtual teaching and learning spaces pre and during the ongoing pandemic. Autoethnography is a research methodology that analyzes a phenomenon through the use of self-narratives, which would otherwise remain private or buried. This paper uses an autoethnographic approach to describe first-hand. the experiences and learnings of an educator at a Western US Public University. This paper describes how first as an international student, a first …

Postural Control Differences Between Patients With Posterior Tibial Tendon Dysfunction And Healthy People During Gait, Junsig Wang, L. Daniel Latt, Robert D. Martin, Erin M. Mannen

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Background: Patients with posterior tibial tendon dysfunction (PTTD) may exhibit postural instability during walking likely due to a loss of medial longitudinal arch, abnormal foot alignment, and pain. While many studies have investigated gait alterations in PTTD, there is no understanding of dynamic postural control mechanisms in this population during gait, which will help guide rehabilitation and gait training programs for patients with PTTD. The purpose of the study was to assess dynamic postural control mechanisms in patients with stage II PTTD as compared to age and gender matched healthy controls. Methods: Eleven patients with stage II PTTD (4 males …

Engineering Instruction, Inclusion, And Comics: Reflections From A Student Illustrator And An Instructor, Addison Totman, Sreyoshi Bhaduri, Krishna Pakala, Cherie D. Edwards, Michelle Soledad

Mechanical and Biomedical Engineering Faculty Publications and Presentations

This paper presents the opportunity gap for comics in engineering education, through reflections from a team redesigning a mechanical engineering syllabi using illustrations. To increase a sense of belonging among diverse students, the authors of this paper propose a graphic narrative focused on the curriculum of the mechanical engineering department at a large public university in Western United States. We hope that this paper addresses the underutilized and largely missed opportunity to add engagement, better conceptual understanding, and improve inclusion in engineering classrooms through incorporating visual illustrations.

Work-In-Progress: Mobile Assisted Gains Through Innovative Curriculum For Students In The Thermal-Fluids Science Course, Maeve Bakic, Krishna Pakala, Diana Bairaktarova, Devshikha Bose

Mechanical and Biomedical Engineering Faculty Publications and Presentations

A learner-centered higher education ecosystem is essential to effective educational outcomes and societal advancement. Mobile devices such as smartphones, tablets, and tablet computers enable learning anytime and from any location, blurring the boundaries between formal and informal learning. When paired with effective pedagogy, mobile technologies can positively impact the teaching and learning experience for students in high-demand science, technology, engineering and mathematics (STEM) disciplines, increasing the flexibility and ease with which they are able to pursue their education while developing their professional identities as engineers. Student retention remains a problem in STEM programs. In engineering, many students do not even …

Novel Hybrid Solar Nanophotonic Distillation Membrane With Photovoltaic Module For Co-Production Of Electricity And Water, Alejandro Espejo Sanchez, Nipun Goel, Todd Otanicar

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Solar energy utilization and desalination are both critical needs for large portions of the world facing energy and water challenges. Direct contact membrane distillation is an attractive thermally driven desalination technique that can easily be integrated with solar energy. Here we propose and experimentally demonstrate for the first time a hybrid direct contact membrane desalination plus photovoltaic device. The system utilizes partially transparent photovoltaic cells to produce electricity and pass thermal energy to the nanoparticle doped membrane to produce thermal energy at the membrane surface. A custom lab-scale direct contact membrane distillation setup characterizes the membranes fabricated off-sun and on-sun. …

Measuring Engineering Students’ Engagement In Sustainability Design Concepts, Karen Perez, Donald Plumlee

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Within industries, governments, and accreditation organizations, there has been a push to incorporate sustainability concepts into engineering education. Universities like Boise State University (BSU) are starting to place greater emphasis on the inclusion of sustainability concepts in different engineering program curricula. As part of a project funded by the National Science Foundation (NSF), the BSU mechanical engineering program is integrating sustainability concepts specifically by using active learning modules (ALMs) suitable for each level of student education, progressing from freshman to senior. ALMs have shown to be more effective in improving motivation in the classroom compared to traditional learning. To measure …

Role Of The Nuclear Envelope In The Mechanoregulation Adipogenesis, Matthew H. Goelzer

Boise State University Theses and Dissertations

Mechanical signals are known regulators of mesenchymal stem cell (MSC) fate, regulating their differentiation into osteoblasts, chondrocytes, and adipocytes. These relevant mechanical signals reach to nucleus through nuclear envelope proteins such as Lamin A/C and the Linker of the Nucleoskeleton and Cytoskeleton (LINC) complexes. Within the context of bone, clinically relevant mutations of Lamin A/C and the LINC complexes have been shown to alter adipogenic and osteogenic MSC differentiation patterns, suggesting that that nucleo-cytoskeletal connectivity provided by nuclear envelope is important in regulating MSC fate. Using MSC adipogenesis as a model of MSC mechanical regulation, the goal of this work …

Nuclear Envelope Mechanobiology: Linking The Nuclear Structure And Function, Matthew Goelzer, Julianna Goelzer, Matthew L. Ferguson, Corey P. Neu, Gunes Uzer

Mechanical and Biomedical Engineering Faculty Publications and Presentations

The nucleus, central to cellular activity, relies on both direct mechanical input as well as its molecular transducers to sense external stimuli and respond by regulating intra-nuclear chromatin organization that determines cell function and fate. In mesenchymal stem cells of musculoskeletal tissues, changes in nuclear structures are emerging as a key modulator of their differentiation and proliferation programs. In this review we will first introduce the structural elements of the nucleoskeleton and discuss the current literature on how nuclear structure and signaling are altered in relation to environmental and tissue level mechanical cues. We will focus on state-of-the-art techniques to …

Integration Of Neural Architecture Within A Finite Element Framework For Improved Neuromusculoskeletal Modeling, Victoria L. Volk, Landon D. Hamilton, Donald R. Hume, Kevin B. Shelburne, Clare K. Fitzpatrick

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Neuromusculoskeletal (NMS) models can aid in studying the impacts of the nervous and musculoskeletal systems on one another. These computational models facilitate studies investigating mechanisms and treatment of musculoskeletal and neurodegenerative conditions. In this study, we present a predictive NMS model that uses an embedded neural architecture within a finite element (FE) framework to simulate muscle activation. A previously developed neuromuscular model of a motor neuron was embedded into a simple FE musculoskeletal model. Input stimulation profiles from literature were simulated in the FE NMS model to verify effective integration of the software platforms. Motor unit recruitment and rate coding …

Three-Dimensional Phase Field Modeling Of Fracture In Shape Memory Ceramics, Ehsan Moshkelgosha, Mahmood Mamivand

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Despite the vast applications of transformable ceramics, such as zirconia-based ceramics, in different areas from biomedical to aerospace, the fundamental knowledge about their mechanical degradation procedure is limited. The interaction of the phase transformation and crack growth is crucial as the essential underlying mechanism in fracture of these transformable ceramics, also known as shape memory ceramics. This study develops a three-dimensional (3D) multiphysics model that couples the variational formulation of brittle crack growth to the Ginzburg-Landau equations of martensitic transformation. We parameterized the model for the 3D single crystal zirconia, which experienced stress- and thermal-induced tetragonal to monoclinic transformation. The …

Effect Of Temperature On Abrasion Erosion In Particle Based Concentrating Solar Powerplants, Nipun Goel, Tessa Mei-Lin Fong, John P. Shingledecker, Andrew Russell, Michael W. Keller, Siamack A. Shirazi, Todd Otanicar

Mechanical and Biomedical Engineering Faculty Publications and Presentations

The use of solid particles as a heat transfer medium is being explored for concentrated solar power plants (CSP) to increase their efficiency by achieving operating temperature >700 °C. During operation, these hot particles are expected to move along the various components within the collector system, resulting in material degradation from a combination of high-temperature oxidation and erosion. In the present study, the performance of candidate materials was evaluated through a series of abrasion erosion experiments at room temperature as well as at 800 °C. Wear in metallic and refractory type materials was investigated using CarboBead® HSP 40/70 particles inside …

Musculoskeletal Adaptation Of Young And Older Adults In Response To Environmental, Physical, And Cognitive Conditions, Amy E. Holcomb

Boise State University Theses and Dissertations

Accidental falls present a large functional and financial burden among people aged 65 years and older. Falls, injuries associated with falls, and the fear of falling decrease quality of life, physical function, and independence for older adults. To prevent falls, improve stability, and protect joints from damage or injury, the typical response to "challenging" conditions include cautious gait, increase muscle co-contraction, and decreased range of motion. These compensatory strategies are more pronounced in the older adult population with apprehensive "cautious" gait at slower speeds, decreased knee flexion, and increased muscle activation around the knee and ankle. The underlying mechanisms and …

Evaluating Stem Course Re-Design Strategies In Light Of Covid-19, Ulises Juan Trujillo Garcia, Krishna Pakala, Samantha Schauer, Diana Bairaktarova, Bhaskar Chittoori

Mechanical and Biomedical Engineering Faculty Publications and Presentations

The COVID-19 pandemic brought on unprecedented challenges to the teaching and learning communities that required faculty to make purposeful changes in their teaching approaches. Many faculty members had to shift rapidly from in-person to online mode of instruction. This study documents perceptions of STEM faculty who made the change to online teaching. It reports on what strategies faculty used to transition to remote/online teaching and how this change impacted student learning. The study results indicated that almost two-thirds of the faculty changed how they evaluated their students. Results also showed that the sudden change to remote learning negatively impacted student …

Centralized And Decentralized Optimal Control Of Variable Speed Heat Pumps, Ryan S. Montrose, John F. Gardner, Aykut C. Satici

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Utility service providers are often challenged with the synchronization of thermostatically controlled loads. Load synchronization, as a result of naturally occurring and demand-response events, has the potential to damage power distribution equipment. Because thermostatically controlled loads constitute most of the power consumed by the grid at any given time, the proper control of such devices can lead to significant energy savings and improved grid stability. The contribution of this paper is the development of an optimal control algorithm for commonly used variable speed heat pumps. By means of selective peer-to-peer communication, our control architecture allows for the regulation of home …

Lamin A/C Is Dispensable To Mechanical Repression Of Adipogenesis, Matthew Goelzer, Gunes Uzer

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Mesenchymal stem cells (MSCs) maintain the musculoskeletal system by differentiating into multiple lineages, including osteoblasts and adipocytes. Mechanical signals, including strain and low-intensity vibration (LIV), are important regulators of MSC differentiation via control exerted through the cell structure. Lamin A/C is a protein vital to the nuclear architecture that supports chromatin organization and differentiation and contributes to the mechanical integrity of the nucleus. We investigated whether lamin A/C and mechanoresponsiveness are functionally coupled during adipogenesis in MSCs. siRNA depletion of lamin A/C increased the nuclear area, height, and volume and decreased the circularity and stiffness. Lamin A/C depletion significantly decreased …

3d Printable And Computational Models Of The Bone Marrow Mechanical Environment, Alexander Regner

Boise State University Theses and Dissertations

Aged individuals and astronauts experience bone loss despite rigorous physical activity. Bone mechanoresponse is in part regulated by mesenchymal stem cells (MSCs). We reported that daily low intensity vibration (LIV) restores MSC proliferation in senescence and simulated microgravity models, suggesting reduced mechanical signal delivery to MSCs likely contributes to declining bone mechanoresponse. To this end, we have developed a 3D bone marrow analog which controls trabecular geometry, marrow mechanics and external stimuli.

Finite element (FE) models of hydrogels, representing bone marrow, were generated using instantaneous compression (1000% strain/s, 20% strain) and relaxation experiments (100s) of both gelatin and hyaluronin-based hydrogels. …

Kinematic And Kinetic Changes After Total Hip Arthroplasty During Sit-To-Stand Transfers: Systematic Review, Junsig Wang, Safeer F. Siddicky, Michael P. Dohm, C. Lowry Barnes, Erin M. Mannen

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Background: Total hip arthroplasty (THA) is a common and effective surgical procedure that allows patients with hip osteoarthritis to restore functional ability and relieve pain. Sit-to-stand transfers are common demanding tasks during activities of daily living and are performed more than 50 times per day. The purpose of this systematic review is to obtain a comprehensive understanding of biomechanical changes during sit-to-stand transfers after THA.

Methods: Relevant articles were selected through MEDLINE, Scopus, Embase, and Web of Science. Articles were included if they met the following inclusion criteria: 1) participants underwent total hip arthroplasty without restriction on the arthroplasty design, …

Data-Driven Design Of Energy-Shaping Controllers For Swing-Up Control Of Underactuated Robots, Wankun Sirichotiyakul, Aykut C. Satici

Mechanical and Biomedical Engineering Faculty Publications and Presentations

We propose a novel data-driven procedure to train a neural network for the swing-up control of underactuated robotic systems. Our approach is inspired by several recent developments ranging from nonlinear control theory to machine learning. We embed a neural network indirectly into the equations of motion of the robotic manipulator as its control input. Using familiar results from passivity-based and energy-shaping control literature, this control function is determined by the appropriate gradients of a neural network, acting as an energy-like (Lyapunov) function. We encode the task of swinging-up robotic systems through the use of transverse coordinates and goal sets; which …

Low-Intensity Vibration Restores Nuclear Yap Levels And Acute Yap Nuclear Shuttling In Mesenchymal Stem Cells Subjected To Simulated Microgravity, Matthew Thompson, Kali Woods, Joshua Newberg, Julia Thom Oxford, Gunes Uzer

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Reducing the musculoskeletal deterioration that astronauts experience in microgravity requires countermeasures that can improve the effectiveness of otherwise rigorous and time-expensive exercise regimens in space. The ability of low-intensity vibrations (LIV) to activate force-responsive signaling pathways in cells suggests LIV as a potential countermeasure to improve cell responsiveness to subsequent mechanical challenge. Mechanoresponse of mesenchymal stem cells (MSC), which maintain bone-making osteoblasts, is in part controlled by the “mechanotransducer” protein YAP (Yes-associated protein), which is shuttled into the nucleus in response to cyto-mechanical forces. Here, using YAP nuclear shuttling as a measurement outcome, we tested the effect of 72 h …

Annual Simulation Of Photovoltaic Retrofits Within Existing Parabolic Trough Concentrating Solar Powerplants, Nipun Goel, Hannah O'Hern, Matthew Orosz, Todd Otanicar

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Solar power for electricity production comes from either photovoltaics or concentrating solar power plants. The former has seen rapid growth and expansion due to the rapid fall in global prices, while the latter has seen moderate growth due to ability to cheaply store thermal energy for later use. Hybridization, or combining photovoltaics with concentrating solar power represents a potential way for lowering cost while enabling long term storage. Over 5 GW of capacity exist worldwide using parabolic trough style technology for concentrating solar power which presents a unique option for optimization in the form of a photovoltaic retrofit. While it …

Emerging Gene-Editing Modalities For Osteoarthritis, Alekya S. Tanikella, Makenna J. Hardy, Stephanie M. Frahs, Aidan G. Cormier, Kalin D. Gibbons, Clare K. Fitzpatrick, Julia Thom Oxford

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Osteoarthritis (OA) is a pathological degenerative condition of the joints that is widely prevalent worldwide, resulting in significant pain, disability, and impaired quality of life. The diverse etiology and pathogenesis of OA can explain the paucity of viable preventive and disease-modifying strategies to counter it. Advances in genome-editing techniques may improve disease-modifying solutions by addressing inherited predisposing risk factors and the activity of inflammatory modulators. Recent progress on technologies such as CRISPR/Cas9 and cell-based genome-editing therapies targeting the genetic and epigenetic alternations in OA offer promising avenues for early diagnosis and the development of personalized therapies. The purpose of this …

Decellularization Of Porcine Cartilage Promotes Chondrogenic Differentiation Of Human Chondrocytes, Roxanne Nicole Stone

Boise State University Theses and Dissertations

Knee osteoarthritis (knee OA) is the most common type of osteoarthritis (OA) and accounts for 70% of arthritis-related hospital admissions and 23% of clinical visits. Major limitations in both the current non-surgical and surgical methods are that they only relieve pain and show no evidence for restoring natural tissue anatomy. Leaders in the field propose that a stem cell treatment approach holds promise for the regeneration of a greater proportion of hyaline-like tissue at the repair site. (Cross et al., 2014; Escobar Ivirico, Bhattacharjee, Kuyinu, Nair, & Laurencin, 2017; Helmick et al., 2008; Toh, Foldager, Pei, & Hui, 2014).

It …

A Computational Framework To Model Mesenchymal Stem Cell Nucleus Mechanics Using Confocal Microscopy, Zeke Kennedy

Boise State University Theses and Dissertations

The mechanical properties of the cell nucleus are emerging as a key component in genetic transcription. It has been shown that the stiffness of the nucleus in part regulates the transcription of genes in response to external mechanical stimuli. The stiffness has been shown to change as a result of both disease and changes to the external environment. While the mechanical structure of the nucleus can be visually documented using a confocal microscope, it is currently impossible to test the stiffness of the nucleus without a mechanical testing apparatus such as an atomic force microscope. This is problematic in that …

Revolutionizing The Mechanical Engineering Undergraduate Curriculum, Shelby Ann Mcneilly, Krishna Pakala, Donald Plumlee

Mechanical and Biomedical Engineering Faculty Publications and Presentations

As the age of technological advancement and occupational opportunity continues to progress, companies must be constantly adjusting and transforming in order to accommodate industry demands. With these quickly developing requirements comes an expectation of employee experience and skill sets. For individuals seeking a career in mechanical engineering, moving forward with the tools necessary for success in this continuously evolving world begins with higher education. This paper is the first of a three-part series to report on the progress of Boise State University’s Mechanical and Biomedical Engineering Department’s mission to implement a revolutionized curriculum in their academic program. This paper will …

Faculty Perspectives On The Impact Of Virtual Office Hours In Engineering Courses, Brooke-Lynn Caprice Andrade, Krishna Pakala, Diana Bairaktarova, Douglas Hagemeier, Harish Subbaraman

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Instructor-student interaction is an important element of a course design, but office hours can be challenging to attend based on students’ commitments. They have time and space limitations that prevent students from getting the help they need and often garner poor attendance. Virtual office hours can address issues related to low attendance and provide a low stakes environment where unhindered learning can happen. Virtual office hours are flexible, yield productive interactions, and all enrolled students can participate. This study reports on three engineering instructors’ perspectives on the efficacy of virtual office hours compared to the traditional face-to-face interactions with the …