Engineering Commons^™

Ai For Life Sciences: From Geometric Protein Modeling To Multimodal Drug Design, Feng Jiang

Computer Science and Engineering Dissertations

Predicting biomolecular interactions, from immune recognition to drug–target binding, is a central problem in the life sciences and computational drug discovery. Deep learning has advanced this area, yet three challenges persist: the topology of large, highly imbalanced interaction networks; structural noise in computationally predicted protein models; and the integration of multimodal information such as functional text and taxonomic annotations. This dissertation develops a coherent set of models spanning immune complex prediction and small-molecule drug design: graph learning that addresses network topology and severe class imbalance; a noise-tolerant method that fuses predicted structures with evolutionary sequence features; and multimodal representation learning …

Navigating The Intersection Of Faa Grant Assurances And Environmental Regulations: Assessing Impacts On Airport Sustainability Efforts, Chad D. Richards

Senior Honors Theses and Projects

Airports in the United States operate within a very complicated regulatory environment that is shaped by federal aviation policy, environmental and state laws, and promises made to the federal government through sponsor assurances, also known as grant assurances. As environmental concerns surrounding aviation continuously grow, airports have been increasingly implementing sustainability initiatives aimed at reducing emissions and improving energy efficiency. Implementing these initiatives is often influenced by regulatory frameworks governing airport operations and infrastructure development. The goal is to examine how federal regulatory structures influence sustainability initiatives at U.S. airports by using a qualitative case study approach to examine sustainability …

Soil Freezing Characteristic Surface For Partially Frozen Soils, Antai Dong, Xiong Zhang, Ming Xiao

Civil, Architectural and Environmental Engineering Faculty Research & Creative Works

The soil freezing characteristic curve (SFCC), which relates unfrozen water content to temperature, is a fundamental constitutive relationship in frost heave simulations. However, the influence of soil suction, another critical state variable, is often neglected. This study highlights how the SFCC is significantly affected by suction conditions, with unfrozen water content varying markedly between saturated (suction = 0) and completely dried (suction = ∞) conditions at the same subfreezing temperature. Recognizing this limitation, the concept of the soil freezing characteristic surface (SFCS) is proposed to incorporate the impacts of both temperature and suction on unfrozen water content. After that a …

Managing And Accelerating The Circular Economy Transitions Within The Construction Value Chain Using Network Governance And Game Theory Systems Perspectives, Radwa Eissa, Islam H. El-Adaway

Civil, Architectural and Environmental Engineering Faculty Research & Creative Works

The fragmented nature of the construction industry has hindered its transition toward circular economy (CE) practices. While game theory (GT) has been successfully applied to support the strategic decisions of CE transitions in other sectors, CE-GT models in the construction domain remain extremely limited. This paper addresses two research questions: (1) how are CE network governance activities currently modeled using GT across domains? (2) How can such models be transferred and adapted to solve strategic interactions within the construction value chain in a manner that enables CE practices to emerge as equilibrium outcomes? These questions are driven by the need …

Carbonated Blast-Furnace Slag As Supplementary Cementitious Material: Phase Transition And Effect On Cement Hydration, Gao Deng, Nannan Zhang, Wenyu Liao, Yongjia He, Linnu Lu, Lingyu Chi, Hongyan Ma

Civil, Architectural and Environmental Engineering Faculty Research & Creative Works

Blast-furnace slag, which contains high levels of CaO (and MgO), holds potential as a feedstock for CO₂ capture and storage. This study investigates the phase transitions occurring during the wet carbonation of ground granulated blast-furnace slag (GGBFS), characterizes the physical and chemical properties of carbonated GGBFS (CS), evaluates its pozzolanic reactivity, and examines the microstructure and performance of cement pastes blended with GGBFS or CS. The findings reveal that aragonite and calcite, the primary carbonation products, precipitate on the surface of GGBFS, hindering its dissolution and thereby reducing both the pozzolanic reactivity and the early strength of cement pastes. …

Localized Air Pollution Impacts From Data Centers In Northern Virginia, Damian Pitt, Ivan Suen, Ellie Plisko

Institute for Sustainable Energy and Environment Publications and Presentations

This report examins the extent of air pollution emissions resulting from the use of backup generators at data centers in Northern Virginia, including both actual current emissions and potential future emissions, and how those emissions totals compare to other sources of air pollution in the Northern Virginia region. It also examines how exposure to data center emissions correlates with demographic characteristics such as race, income, and education.

We while the air pollution emissions from individual data centers is minor, the collective impact from the 100+ such facilities in the Northern Virginia region is significant. Notably, the cumulative emissions exposure in …

Ransomware As Organization: A Comparative Analysis Of Corporate And Criminal Structures In Conti, George Urling

Theses, Dissertations and Capstones

Cybercriminal groups continue to pose major threats to global cybersecurity. One of the most common types of cybercriminal groups are, “Ransomware-as-a-Service (RaaS)" groups, who create and sell ransomware. While research is conducted into the development of ransomware, there is limited reporting on the organizational structure and habits of RaaS groups. In 2022, prominent RaaS group Conti had their chat logs leaked, with the logs ranging from 2020 to 2022. This study seeks to provide a deeper understanding of RaaS group structures by utilizing the Conti leaked logs as a case study. The study, entitled “Ransomware as Organization: A Comparative Analysis …

A Macrocognitive Design Taxonomy For Simulation-Based Training Systems: Bridging Cognitive Theory And Human-Computer Interaction, Jessica M. Johnson

Virginia Digital Maritime Center (VDMC) Faculty Publications

Simulation-based training systems are increasingly deployed to prepare learners for complex, safety-critical, and dynamic work environments. While advances in computing have enabled immersive and data-rich simulations, many systems remain optimized for procedural accuracy and surface-level task performance rather than the macrocognitive processes that underpin adaptive expertise. Macrocognition encompasses higher-order cognitive processes that are essential for performance transfer beyond controlled training conditions. When these processes are insufficiently supported, training systems risk fostering brittle strategies and negative training effects. This paper introduces a macrocognitive design taxonomy for simulation-based training systems derived from a large-scale meta-analysis examining the transfer of macrocognitive skills from …

Stentrx, Emma Barna, Minuthi Cooray, Bruce Newlands, Joseph A. Sabetta

Williams Honors College, Honors Research Projects

This project aims to develop a biodegradable, drug-eluting biliary stent for the treatment of biliary cancers. Current metal stents that restore bile flow bit are non-degradable, prone to migration, and unable to deliver drugs locally. The proposed stent will be biocompatible, biodegradable, and capable of controlled drug release to both maintain bile flow and treat tumors. The end goal is to produce a functional prototype that can be deployed via a minimally invasive catheter and maintain bile duct patency for at least three months. The project is expected to be involved in the NEOMED Bench-to-Bedside competition and provisionally patented.

Goal-Driven Shared Control In Eeg-Based Brain Machine Interface For Freewill Reaching And Grasping With Movement Intention Detection And Goal Position Decoding, Bhoj Raj Thapa

Theses and Dissertations--Electrical and Computer Engineering

Upper limb motor impairments can severely limit a person’s ability to perform everyday reaching and grasping tasks. Electroencephalogram (EEG)-based brain machine interfaces (BMIs) offer a non-invasive approach for translating neural activity into control signals for assistive devices such as robotic arms. However, traditional EEG-based BMI studies have generally focused on externally cued paradigms, where both movement timing and target selection are specified by the experimenter rather than freely chosen by the user. In addition, shared control offers a practical framework for assistive BMI operation by dividing responsibility between the user and the intelligent robotic system. However, in many EEG-based shared …

Ai-Driven Network Orchestration: Adaptive Routing For Federated Learning Over Software-Defined Hybrid Wans, Osama Abu Hamdan

Computer Science and Engineering Dissertations - Archive

Modern wide-area networks increasingly adopt hybrid architectures that combine high-capacity wired backbones with flexible wireless links to extend connectivity to remote and underserved locations. However, the bandwidth variability inherent in wireless segments creates routing challenges that traditional protocols, designed for static link capacities, cannot adequately address. Simultaneously, Federated Learning (FL) has emerged as a privacy-preserving distributed machine learning paradigm in which geographically dispersed clients collaboratively train shared models without exchanging raw data. When deployed over wide-area networks, FL training is severely bottlenecked by communication overhead, particularly in cross-silo settings where model payloads reach hundreds of megabytes and synchronous aggregation protocols …

Microwave Synthesis And Characterization Of Fe2ptge Nanoparticles, Ally T. Fennell, David Carnevale

Chemistry Theses

Magnetic, semiconductor, and spintronic materials are vital to the functionality of devices from household appliances and sensors to medical and computing systems. This study discusses a novel synthesis and characterization of nanoscale Fe₂PtGe nanoparticles. The material was synthesized using microwave irradiation (175oC, 5 minutes) and characterized using XRD, XRF, TEM, and VSM. XRD of the synthesized particles correlates to a cubic crystal structured, indicating a face-centered cubic (fcc) platinum structure with iron and germanium incorporated in a disordered manner. XRF confirms the presence and relative ratios of iron, platinum, and germanium species. TEM imagery shows spherical nanoparticles with an average …

Rope Cutting Task Module, Rebecca Usher

Engineering Theses

This project focuses on the design and evaluation of a rope-cutting module for use with robotic platforms developed by New England Robotics Validation and Experimentation Center (NERVE) and the University of Massachusetts Lowell. The system is designed to cut nylon rope using a specialized robotic cutting arm that can be attached to the robot.

The system consists of a module task box that has two pegs that hold two arms to each one. One arm where the spring- mechanism inside of the task module and the second arm the one on top of the box hold the string in place …

Moisture Performance Of Coated Cross-Laminated Timber Under Coastal Conditions In Vertical And Horizontal Orientations With And Without Weather And Vapor Resistive Barriers, Mia Raley

Engineering Theses

Rhode Island is experiencing sea level rise, and more flooding and erosion during storm events due to climate change. The Rhode Island construction industry wants to adopt mass timber, but have concerns with the changing coastal environment on cross-laminated timber (CLT) wall and slab panels. This research aims to understand how coastal conditions affect CLT under different protection conditions, panel orientations, and structure type, by collecting moisture and temperature data on two structures, one commercially-fabricated and one laboratory-fabricated, located on Shell Path from early-July to early-April. Results found that all layers of horizontally-oriented panels benefitted from an additional protective weather-resistant-barrier …

Improving Ground Penetrating Radar Calibration For Chloride Assessment In Reinforced Concrete Bridge Decks, Camila Silva Wendland

Engineering Theses

This study investigates how ground penetrating radar (GPR) can be used to estimate chloride content in reinforced concrete bridge decks. Chloride buildup at the rebar level can lead to corrosion and structural damage, but current testing methods are destructive and limited to small sample areas. GPR offers a non-destructive alternative, but interpreting reflection amplitudes is challenging because they are affected by multiple factors, including moisture content and rebar depth. To address this, a simulation-based calibration method was developed. Finite-difference time-domain simulations were used to study how chloride, moisture, and rebar depth influence GPR reflection amplitudes. A depth correction method was …

Investigating The Dynamic Rating Method: Effects Of Flood Wave Geometry On Discharge Estimation, Daniel James Read

Masters Theses

Rating curves are a vital tool to convert from observed stage to discharge in streamflow monitoring. Most gaging sites utilize a simple rating curve, which assumes a monotonic relationship between stage and discharge. In most cases, this assumption is valid; however, dynamic effects of flood waves often cause significant error in discharge estimation for mildly sloped streams. The dynamic rating method utilizes a numerical solution of the St. Venant Equations applied to time series stage data to compute discharge. Within this method, there is a flood wave parameter called the flood wave factor. The researchers designed a formal computational model …

Calcium Based Carbon Negative Fillers And Additives: Effects On Hydration And Performance Of Low-Carbon Cement Systems, Smita Bhowmick Shithi

Masters Theses

Cement production is a major source of global CO₂ emissions creating an urgent need for carbon-negative fillers and functional additives that lower clinker use while maintaining cement performance. This thesis investigates the effects of organic mineral salts as fillers and additives on cement hydration, fresh properties, compressive strength and pore structure. In the first study, ordinary Portland cement (OPC) was partially replaced with calcium carbonate or calcium oxalate to enable a direct comparison under controlled particle size distribution (PSD). Rheology, flowability, hydration kinetics, phase evolution, mechanical performance and water absorption were evaluated. Calcium carbonate promoted early hydration through nucleation and …

Assessment Of Simulation Software Used For Cubesat Gnc Verification And Validation By University Research Teams, Alexander Taiyo Newett

Masters Theses

As the growth in university satellite teams continues, along with the greater trend in the small satellite market, the need for a guidance, navigation, and control verification and validation pipeline suitable for these young and inexperienced teams becomes evident. Much of the mathematical theory and software implementation of GNC concepts are large hurdles for teams largely composed of undergraduate students.

Many software packages exist that can help these teams achieve GNC verification and validation. If the learning curves of these software packages can be overcome, new satellite teams have the opportunity to better build and test GNC algorithms that are …

Public Preferences And Trade-Offs In Critical Mineral Mining Development In The United States, Bamidele Joseph Ajiga

Masters Theses

Rising demand for battery-critical minerals has increased U.S. mining efforts, but projects often face public opposition. There is limited work on how individuals in affected regions evaluate trade-offs between economic and environmental risks.

This research applies a discrete choice experiment to examine individual preferences for proposed battery-critical minerals mining projects in Missouri, Minnesota, and Idaho. 1908 respondents evaluated hypothetical mining projects defined by jobs, state tax revenue, the proportion of tailings reprocessed, groundwater impacts, and surface water impacts, under gold and silver versus battery-critical mineral framings.

Conditional and mixed logit models were used to assess the importance of attributes, demographic …

Autonomous Navigation Development And On-Ground Validation For Satellite Rendezvous And Proximity Operations, Logan Banker

Masters Theses

Spacecraft rendezvous and docking are critical mission phases for various applications of spaceflight, including active debris removal (ADR) and in-orbit servicing, assembly, and manufacturing (ISAM). While previous missions utilized humans to perform rendezvous and docking, this style of mission greatly increases safety risks and cannot be implemented on a large scale. Autonomous servicing satellites provide a path towards scalable rendezvous and proximity operations (RPO) because these autonomous agents do not require human intervention. This work presents a lightweight convolutional neural network (CNN) for the navigation system of an agent which analyzes monocular images and predicts the target's position and orientation …

Assessment And Comparison Of Selected Carbon Ablation Models In Hypersonic Free-Flight And Arc-Jet Conditions, Andrew Steven Heider

Masters Theses

Accurate prediction of ablative thermal protection system (TPS) performance is critical for hypersonic vehicle design. However, numerical prediction of ablation remains challenging because results are influenced by complex physics and the choice of surface chemistry model and assumptions made in material response calculations. The objective of this work is to evaluate several carbon ablation models and their implementation within modern computational fluid dynamics (CFD) codes. Numerical simulations were performed using NASA’s LAURA flow solver and the commercial CFD code ANSYS Fluent, which coupled Navier-Stokes with surface chemistry models describing carbon oxidation, nitridation, and sublimation reactions. Several reaction sets were considered, …

Geometric Effects Of Warfighters On Body Armor Fit And Protective Capabilities Against Shock Wave Energy, Melissa Lynn Sutter

Doctoral Dissertations

Body armor is a vital piece of protective equipment for warfighters to defend against threats, necessitating continued development to improve comfort, weight, and protection. However, female warfighters often wear unisex body armor, designed primarily for the male torso. Current research has evaluated the short- and long-term detriments of female warfighters wearing these armors, focusing on comfort and performance. However, these studies do not comprehensively consider how a non-form-fitting armor compromises warfighter safety from battlefield threats. This research examines the geometric effects of female warfighters on armor protection level when defending against shock threats by evaluating the energy distribution on a …

A Comprehensive Statistical And Regional Analysis Of Lng-Powered Marine Vessels On Ghg Mitigation Strategies Considering Existing Bunkering Stations And Gwp Values, Canberk Hazar, Onur Yuksel, Murat Bayraktar

Journal of Marine Science and Technology–Taiwan

This study aims to quantify and analyse emissions from marine vessels that can operate on liquefied natural gas (LNG) but continue to use conventional fuels, largely due to the limited availability of LNG bunkering stations (BSs) over long distances. Four regions have been identified as having high concentrations of LNG-fueled vessels but limited access to operational BSs: the West Coast of the United States of America (USA), South Africa–Good Hope–Madagascar, Northwest Africa, and Brazil. This selection is based on the geographical distribution of these ships and the existing infrastructure. Hourly greenhouse gas (GHG) emissions have been calculated by considering the …

Bio-Based Oxalic Acid Production In Issatchenkia Orientalis Enables Sustainable Rare Earth Recovery, Jingxia Lu, Wenjun Guo, Ziye Dong, Sarang S. Bhagwat, Shih-I Tan, Zhixin Zhu, Andrew Johnson, Jeremy S. Guest, Rick Q. Honaker, Dan M. Park, Yongqin Jiao, Huimin Zhao

Mining Engineering Faculty Publications

The growing demand for rare earth elements (REEs) in clean energy and high-tech industries underscores the need for sustainable recovery methods and a reliable supply of processing chemicals. Here, we establish a microbial platform using the acid-tolerant yeast Issatchenkia orientalis SD108 to produce bio-oxalic acid for REE recovery. By introducing an oxaloacetate cleavage pathway and applying metabolic engineering, the engineered strain produces 39.53 g·L^-1 oxalic acid at pH 4.0 in fed-batch fermentation. The crude fermentation broth, used without purification, efficiently precipitates over 99% neodymium (Nd), 99% dysprosium (Dy), and 98% lanthanum (La) from individual REE chloride solutions. Recovery from …

Aster Remote Sensing Satellite Imagery For Regional Mineral Mapping In The Mcmurdo Dry Valleys, South Victoria Land, Antarctica, Khurram Riaz, Amin Beiranvand Pour, Jabar Habashi, Aidy M. Muslim, Iman Masoumi, Ali Moradi Afrapoli, Mazlan Hashim, Kamyar Mehranzamir, Farshid Sattari

Mining Engineering Faculty Publications

The McMurdo Dry Valleys (DVs) of South Victoria Land, Antarctica, constitute the largest ice-free region on the continent and one of Earth’s most Mars-analog environments. Their hyper-arid polar desert conditions offer a unique setting for investigating surface weathering and mineralogical processes under extreme climates. This study presents the first regional-scale mapping of alteration and crystalline weathering minerals across the McMurdo DVs. It uses Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) multispectral data; visible and near-infrared (VNIR) and shortwave infrared (SWIR) bands were analyzed through a Spectral Hourglass Workflow, endmember extraction, and spectral unmixing with Matched Filtering (MF) and Constrained …

Characterization Of Full Bridge Strain Transducers For Haulage Equipment Payload Distribution Monitoring, Jean-Pierre Strydom, Steven Schafrik, Zacharias Agioutantis, Matthew J. Beck, Joseph Sottile

Mining Engineering Faculty Publications

Creating a dependable approach for identifying both the mass of a shuttle car and how material is distributed in it removes the need for equipment operators to manually engage the flight chain. The quantification of environmental and installation conditions and the extent of influence considering their combined contribution towards inaccurate or exclusive measurements are to that degree limited. This experimental study investigated how two different strain transducers—installed in a force-shunt configuration—respond to thermo-mechanical loads when used to determine load distribution and position. Initial observations indicated that thermal effects at the installation site contributed to measurement inaccuracies or exclusive readings. The …

Assessing The Criticality Of Construction Trades: Skilled Labor Shortages And Their Cost And Schedule Impacts, Tamima Elbashbishy, Islam H. El-Adaway

Civil, Architectural and Environmental Engineering Faculty Research & Creative Works

Skilled labor shortages are a pressing issue in the construction industry. Existing research has primarily focused on the effects of labor shortages at the project or industry level, but there is limited exploration of how these shortages vary across specific trades and their distinct impacts on project outcomes. Evidence indicates that labor shortages vary significantly among trades. This paper addresses this knowledge gap through quantitatively assessing the criticality of key construction trades based on the (1) extent of skilled labor shortages currently witnessed in each trade, (2) impact of these shortages on cost and schedule performance, and (3) degree of …

Flow Regime-Independent Two-Group Interfacial Area Concentration Model For Dispersed Gas-Liquid Flows In Large-Diameter Pipes, Hossein Barati, Takashi Hibiki, Joshua P. Schlegel, Naofumi Tsukamoto

Nuclear Engineering and Radiation Science Faculty Research & Creative Works

In many power plants, boiling can result in two-phase flows during normal and accident conditions. Heat and mass transfers through the gas-liquid interface in a two-phase flow process are proportional to the interfacial area concentration (IAC). These calculations for nuclear systems are typically performed using advanced system analysis codes such as TRACE. TRACE uses a two-group (2G) model, where bubbles are divided into two groups according to their drag coefficients. Correlations are used to calculate the group-wise void fractions (VFs) and IACs. This study evaluates the accuracy of the TRACE 2G VF and IAC models for vertically upward dispersed flows …

Nahb Production Home Competition As A Learning Tool Towards Incorporating Business Skills In Construction Management Programs, George Berghorn, Chandler Jones, M.G. Matt Syal

The Professional Constructor

There is a growing realization in the construction industry that the traditional focus of Construction Management (CM) education on technical competencies (such as scheduling, estimating, and construction methods) is insufficient in preparing graduates to meet the strategic and leadership demands of the modern construction profession. A successful construction company requires more than project execution; it demands expertise in business development, financial management, marketing, risk management, and organizational leadership. The disparity between the technical and business aspects of CM education has produced graduates who may succeed in project management yet find it challenging to engage with comprehensive business operations.

This study …

Biaxial Bending Response Of Prestressed Concrete Girders Subjected To Accidental Asymmetric Prestressing Strand Loss, Haitham Abdelmalek, Mohanad Abdulazeez, Ahmed Ibrahim, Mohamed Elgawady

Civil, Architectural and Environmental Engineering Faculty Research & Creative Works

Bridge prestressed concrete girders are vulnerable to sudden rupture of prestressing strands caused by accidental collisions with over-height trucks. These incidents often result in the asymmetric loss of prestressing strands and concrete sections, generating a biaxial bending moment caused by the combined effects of lateral bending and existing service loads. The induced lateral bending moment reduces the flexural resistance of prestressed concrete (PC) girders. However, the current AASHTO LRFD (load and resistance factor design) provisions for flexural resistance in PC members do not explicitly address the complexities introduced by biaxial bending, leaving the extent of strength reduction uncertain. This paper …