Engineering Commons^™

Adjacent Slice Prostate Cancer Prediction To Inform Maldi Imaging Biomarker Analysis, Shao-Hui Chuang

Electrical & Computer Engineering Theses & Dissertations

Prostate cancer is the second most common type of cancer among men in the U.S. [1]. Traditionally, prostate cancer diagnosis is made by the analysis of prostate-specific antigen (PSA) levels and histopathological images of biopsy samples under microscopes. Proteomic biomarkers can improve upon these methods. MALDI molecular spectra imaging is used to visualize protein/peptide concentrations across biopsy samples to search for biomarker candidates. Unfortunately, traditional processing methods require histopathological examination on one slice of a biopsy sample while the adjacent slice is subjected to the tissue destroying desorption and ionization processes of MALDI. The highest confidence tumor regions gained from …

Tissue Engineering Cellularized Silk-Based Ligament Analogues, Scott Sell

Theses and Dissertations

The resurgence, and eventual rise to prominence in the field of tissue engineering, that electrospinning has experienced over the last decade speaks to the simplicity and adaptability of the process. Electrospinning has been used for the fabrication of tissue engineering scaffolds intended for use in nearly every part of the human body: blood vessel, cartilage, bone, skin, nerve, connective tissue, etc. Diverse as the aforementioned tissues are in both form and function, electrospinning has found a niche in the repair of each due to its capacity to consistently create non-woven structures of fibers ranging from nano-to-micron size in diameter. These …

A Simple, Yet Effective, Demonstration Of Polymeric Mechanical Behavior, Lanny Griffin, Jeffrey Swab

Biomedical Engineering

Developing an appreciation for the mechanical behavior of polymers materials in a lecture mode can be challenging for students if they have not bad the benefit of a laboratory experience . We have developed a simp le demonstration of thermoplastic polymeric behav ior using low-density polyethylene bags. The demonstration illustrates strengthening, rate effects, and directionality of strengthening and stiffness. Following the demonstration, students are better ab le to articulate the influence of structure, properties, processing , and performance as it applies to thermoplastic polymers.

Analysis Of Strain Transfer To Fbg’S For Sensorized Telerobotic End-Effector Applications, Dean Callaghan, Mark Mcgrath, Ginu Rajan, Eugene Coyle, Yuliya Semenova, Gerald Farrell

Books/Book chapters

Sensorized instruments which cater for the measurement of interaction forces during surgical procedures are not available on current commercial Minimally Invasive Robotic Surgical (MIRS) systems. This paper investigates the ef-fectiveness of advanced optical sensing technology (Fiber Bragg Grating) as sur-gical end effector strain/force sensors. The effects of adhesive bonding layer thickness and length are specifically addressed owing to their importance for ef-fective strain transfer and ensuring compactness of the resulting sensing arrange-ment. The strain transfer characteristics of the compound sensing arrangement are evaluated by the examination of shear transfer through the fiber coating and adhe-sive layers. Detailed analysis of the …

The Effect Of Particle Surface Area To Volume Ratio On Ion Release From Cocr Spheres, Darin J. Grandfield

Master's Theses

In 2005, over 200,000 Americans underwent a hip arthroplasty, the replacement of a hip joint with an artificial prosthesis. Of these arthroplasties, metal-on-metal type implants represent an increasing usage percentage. Metal-on-metal implants are selected largely for their low volumetric wear rate, durability, and resistance to corrosion. In spite of these advantages, little is known concerning the long-term consequences of heavy metal alloy use in the body, although early research indicates potentially carcinogenic results. This thesis is a preliminary investigation into these long term effects and their root causes.

An improved comprehension of the corrosion kinetics and the rate of ion …

Evaluating The Electrical Response Of Polyaniline To Mechanical Strain, Matthew L. Goebel

Master's Theses

This thesis focuses on the electrical output of polyaniline films subjected to uniaxial strain in hydrochloric acid solutions. Polyaniline belongs to novel class of materials known as conducting polymers. Alternating single and double bonds in the backbone of conducting polymers allow them to transmit electric charge when they are doped with negatively charged ions. Modifying the degree of doping and other electrical/chemical treatments allow conducting polymers to exhibit conducting, semi-conducting, or insulating electrical properties. Resilient mechanical properties, good processability, and low cost make conducting polymers good candidates for applications traditionally held by metals and semi-conductors.

When tensile strain is applied …

Time-Frequency Analysis Of Intracardiac Electrogram, Erik Brockman

Master's Theses

The Cardiac Rhythm Management Division of St. Jude Medical specializes in the development of implantable cardioverter defibrillators that improve the quality of life for patients diagnosed with a variety of cardiac arrhythmias, especially for patients prone to sudden cardiac death. With the goal to improve detection of cardiac arrhythmias, this study explored the value in time-frequency analysis of intracardiac electrogram in four steps. The first two steps characterized, in the frequency domain, the waveforms that construct the cardiac cycle. The third step developed a new algorithm that putatively provides the least computationally expensive way to identifying cardiac waveforms in the …

Mechanical Simulation Of Articular Cartilage Based On Experimental Results, Kevin Matthew Stewart

Master's Theses

Recently, a constituent based cartilage growth finite element model (CGFEM) was developed in order to predict articular cartilage (AC) biomechanical properties before and after growth. Previous research has noted limitations in the CGFEM such as model convergence with growth periods greater than 12 days. The main aims of this work were to address these limitations through (1) implementation of an exact material Jacobian matrix definition using the Jaumann-Kirchhoff (J-K) method and (2) quantification of elastic material parameters based upon research findings of the Cal Poly Cartilage Biomechanics Group (CPGBG). The J-K method was successfully implemented into the CGFEM and exceeded …

Actual And Reference Evaporative Losses And Surface Coefficients Of A Maize Field During Nongrowing (Dormant) Periods, Christopher H. Hay, Suat Irmak

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Effective water resources planning, allocation, management, and use in agroecosystems require accurate quantification of actual evapotranspiration (ET_c) during growing and nongrowing (dormant) periods. Prediction of ET_c for a variety of vegetation surfaces during the growing season has been researched extensively, but relatively little information exists on evaporative losses during nongrowing periods for different surfaces. The objectives of this research were to evaluate ET_c in relation to available energy, precipitation, and grass and alfalfa-reference ET (ET_o and ET_r) for a maize (Zea mays L.) field and to analyze the dynamics of surface coefficients …

Mitochondrial Reactive Oxygen Species Production In Excitable Cells: Modulators Of Mitochondrial And Cell Function, David F. Stowe, Amadou K.S. Camara

Biomedical Engineering Faculty Research and Publications

The mitochondrion is a major source of reactive oxygen species (ROS). Superoxide (O₂^•−) is generated under specific bioenergetic conditions at several sites within the electron-transport system; most is converted to H₂O₂ inside and outside the mitochondrial matrix by superoxide dismutases. H₂O₂ is a major chemical messenger that, in low amounts and with its products, physiologically modulates cell function. The redox state and ROS scavengers largely control the emission (generation scavenging) of O₂^•−. Cell ischemia, hypoxia, or toxins can result in excess O₂^•− production when the redox …

Design, Fabrication, And Implementation Of A Single-Cell Capture Chamber For A Microfluidic Impedance Sensor, Joshua-Jed Doria Fadriquela

Master's Theses

A microfluidic device was created for single-cell capture and analysis using polydimethylsiloxane (PDMS) channels and a glass substrate to develop a microfluidic single-cell impedance sensor for cell diagnostics. The device was fabricated using photolithography to create a master mold which in turn will use soft lithography to create the PDMS components for constant device production. The commercial software, COMSOLTM Multiphysics, was used to quantify the fluid dynamics in shallow micro-channels.

The device will be able to capture a cell and sequester it long enough to enable measurement of the impedance spectra that can characterize cell. The proposed device will be …

The Impact Of Lipid Percentage On Fibrous Cap Stability In Atherosclerotic Lesions, Anita Lorraine Crompton

Master's Theses

Coronary artery disease (CAD) is a common cause of sudden cardiac death. Much of the disease is not completely understood, which makes treatment and prevention difficult. Many researchers are using technology, such as advanced imaging techniques and finite element analysis, to better understand the disease. While there is much progress being made to look at the analysis of actual excised diseased arteries, there is still not a standardized model to predict the future of any one lesion. The purpose of this study is to explore the possibility of creating a standardized model to predict the mechanical stability of the fibrous …

Preparation For Nerve Membrane Potential Readings Of A Leech, Laboratory Setup And Dissection Process, Jason Patrick Caulfield

Master's Theses

A well documented laboratory setup, leech preparation process, and bio-potential data recording process are needed. Repeatability and quality data recordings are essential and thus dictate the requirements of the laboratory setup and processes listed above. Advances in technology have both helped and hindered this development. While very precise equipment is required to record the low voltage bio-potentials, noisy electronic equipment and wires surrounding the work area provide high levels of interference. Proper laboratory setup and data recording processes, however, limit the unwanted interference. Quality data can only be recorded from a properly handled and prepared leech subject. Proper setup and …

Do Canines Experience The Effects Of Heart Rate Turbulence?, Melanie Ann Gurunathan

Master's Theses

Background

The canine cardiac system has been the model against which many Class III cardiac devices are validated. Thus, it is expected that the canine heart has very similar electrical model to that found in humans. In 1999, the absence of Heart Rate Turbulence (HRT) after a single Pre-Ventricular Contraction (PVC) was linked to high-risk patient after acute myocardial infarction. Studies of HRT were performed on high-risk patients with Holter-Monitors as were most subsequent HRT studies. If HRT could potentially be used as a risk factor of heart disease, it is interesting to study whether HRT is present following a …

Preparation And Characterization Of Electrospun Poly(D, L-Lactide-Co-Glycolide) Scaffolds For Vascular Tissue Engineering And The Advancement Of An In Vitro Blood Vessel Mimic, Tiffany Richelle Pena

Master's Theses

PREPARATION AND CHARACTERIZATION OF ELECTROSPUN POLY(D,L-LACTIDE-CO-GLYCOLIDE) SCAFFFOLDS FOR VASCULAR TISSUE ENGINEERING AND THE ADVANCEMENT OF AN IN VITRO BLOOD VESSEL MIMIC

Tiffany Richelle Peña

Currently, an estimated 1 in every 3 adult Americans are affected by one or more cardiovascular complications. The most common complication is coronary artery disease, specifically atherosclerosis. Outcomes of balloon angioplasty treatments have been significantly improved with the addition of drug eluting stents to the process. Although both bare metal and drug eluting stents have greatly increased the effectiveness of angioplasty and decreased the occurrence of restenosis, several complications still exist. For this reason, the stent …

Sensorimotor Experience In Virtual Environments, Katherine Grace August

Dissertations

The goal of rehabilitation is to reduce impairment and provide functional improvements resulting in quality participation in activities of life, Plasticity and motor learning principles provide inspiration for therapeutic interventions including movement repetition in a virtual reality environment, The objective of this research work was to investigate functional specific measurements (kinematic, behavioral) and neural correlates of motor experience of hand gesture activities in virtual environments stimulating sensory experience (VE) using a hand agent model. The fMRI compatible Virtual Environment Sign Language Instruction (VESLI) System was designed and developed to provide a number of rehabilitation and measurement features, to identify optimal …

In Vitro Comparison Of A New Stand-Alone Anterior Lumbar Interbody Cage Device With Established Fixation Techniques, Nitin Chawla

Theses

Around 70% of the population in the United States experience low back pain at some point of their lives, of these 4% underwent surgical intervention on the lumbar spine to relieve the pain. Spinal arthrodesis, i.e. joint fusion, is beneficial in many cases as the final option for patients suffering from certain types of low back pain (LBP). In order to promote solid fusion across a decompressed spinal segment, interbody spacers/cages are used with and without posterior instrumentation to provide an initial "rigid" fixation of the segment.

In this study three fresh/frozen human cadaveric lumbar spines were used. Each lumbar …

Reliability Of Resting Brain Networks Using Fmri, Suril Rajeshkumar Gohel

Theses

Resting state FMRI studies on human subjects are primarily focused on elaborating effects of resting state brain networks on task induced paradigm and to check consistency of these networks between different groups of populations. Recent studies have shown consistency of RSFC networks within same subjects with intra-site and intra-session variation.

The primary objective of this study was to check consistency of resting state networks between sites and between different groups of people in spite of change in scanning parameters and population. A total of 437 subjects resting state FMRI data from six different sites were collected varying in age group …

Development Of An Experimental System To Determine The Contribution Of Titin And Collagen To Passive Stiffness Of Myocardium, Saurin Bharat Shah

Theses

Diastolic dysfunction is known to be a major factor for congestive heart failure in aged humans and other mammals. The main contributors to increase in the myocardial stiffness, hindering the cardiac mechanics, are alterations in intracellular titin and extracellular collagen matrix. Titin is a giant extensible protein, the third filament of striated muscle after actin and myosin, which provides elasticity to passive sarcomeres. The aim of this study is to develop an efficient experimental system that will prove to be instrumental in comparing the contribution of titin against collagen to the passive stiffness of cardiac muscle extracted from experimental animals …

An In Vitro Study To Characterize A New Automated High Throughput Neuronal Stretch Injury System, Nicolae Valerian Hususan

Theses

Traumatic brain injury (TBI) is one of the most prevalent long-term neurological conditions and its overall economic consequences rival that of stroke. Considering the importance of the topic, new models for studying TBI are often designed and created. Based on a model developed by the University of Pennsylvania, NJIT constructed a fully automated version, which injures neuronal cell cultures in uniaxial regime and provides the high experimental yield required in pharmaceutical and neuroscience studies.

In this investigation, a new methodology for culturing primary cortical neurons of rat origin was established. Viable cell cultures developed for the first time in NJIT …

PagetʼS Disease (Osteitis Deformans) In Archaeological Remains: A Radiographic Differential, Andrew D. Wade, Gregory J. Garvin, David W. Holdsworth

Anthropology Presentations

Paget’s disease of bone is a metabolic bone disease of unknown etiology and is the most likely disease to cause secondary bone cancer; a prevalence that increases with age[1]. With the increasing age of modern populations, the importance of better understanding this disease will likewise increase. While in vivo tests for the disease cannot be performed in skeletal samples, radiographic views of archaeological remains can provide insight into the origins and natural history of the disease.

Magnetically Anchored "Reduced Trocar" Laparoscopy: Evolution Of Surgical Robotics, Richard Bergs

Bioengineering Theses - Archive

Laparoscopic surgery has become increasingly popular over the last few years due to its benefits; lower morbidity, less perceived pain, better cosmesis results, and less hospital time. For the surgeon however, there are fundamental issues that can make a laparoscopic procedure more difficult than simple open surgery; loss of tactile feel, limited working envelope, high demand for hand-eye coordination, and one trocar-port required for each tool. A revolutionary concept of using magnetics to support tooling across the abdominal wall was conceived by Dr. Jeffrey Cadeddu and his colleagues at the University of Texas Southwestern Medical Center. Collectively referred to as …

Distribution Tridimensionnelle De La Lumière Dans Une Strucutre De Tête D’Adulte Dérivée D’Un Acte Irm: Approche Par La Méthode De Monte Carlo, Chemseddine Mansouri, Jean-Pierre L'Huillier, Nasser H. Kashou

Biomedical, Industrial & Human Factors Engineering Faculty Publications

No abstract provided.

Cardiac Cell Mechanics At The Single Cell Level, John Mcrae

All Theses

The analysis of the cellular microenvironment is an area that has received much
attention recently in the study of the tractions cells use for locomotion. Specifically, the
study of cardiac cell mechanics is of particular interest as cardiac dysfunction is one of
the leading causes of death in America. This progression is fueled by the need to have a
system capable of reproducing mechanical environments before, during and after a
dysfunctional event in order to fully characterize the causes and prevent any permanent
damage. The current study proposes a system capable of providing quantitative
measurements of the cellular microenvironment while …

Adhesion Of Jurkat Cells In Defined Media And Substrates, Sarah De Leo

Honors Capstones

No abstract provided.

Analysis Of The Performance Of Iodinated Contrast X-Ray Attenuator Under Physiologically Relevant Conditions, Peter Frey

Renée Crown University Honors Thesis Projects - All

X-ray is a radiological tool utilized in healthcare institutions around the world to diagnose abnormalities such as bone fractures or the presence of foreign material within patients. The ability for healthcare providers to properly diagnose a problem is improved with advancements in the quality of radiological images. One way to improve image quality is to optimize the contrast range within a single image created by different attenuating characteristics in various types of tissue. In this study, I used a proof-of-concept prototype model of an x-ray attenuation system and an experimental protocol to examine its capacity to equalize x-ray beam signal …

Theoretical Analysis Of Alendronate And Risedronate Effects On Canine Vertebral Remodeling And Microdamage, Xiang Wang, Antonia M. Erickson, Matthew R. Allen, David B. Burr, R. Bruce Martin, Scott J. Hazelwood

Biomedical Engineering

Bisphosphonates suppress bone remodeling activity, increase bone volume, and significantly reduce fracture risk in individuals with osteoporosis and other metabolic bone diseases. The objectives of the current study were to develop a mathematical model that simulates control and 1 year experimental results following bisphosphonate treatment (alendronate or risedronate) in the canine fourth lumbar vertebral body, validate the model by comparing simulation predictions to 3 year experimental results, and then use the model to predict potential long term effects of bisphosphonates on remodeling and microdamage accumulation. To investigate the effects of bisphosphonates on bone volume and microdamage, a mechanistic biological model …

A Tissue Engineering Approach To Anterior Cruciate Ligament, Kristofer Sinclair

All Dissertations

Ruptures of the anterior cruciate ligament (ACL) are the most frequent of injuries to the knee due to its role in preventing anterior translation of the tibia. It is estimated that as many as 200,000 Americans per year will suffer from a ruptured ACL, resulting in management costs on the order of 5 billion dollars. Without treatment these patients are unable to return to normal activity, as a consequence of the joint instability found within the ACL deficient knee.
Over the last thirty years, a variety of non-degradable, synthetic fibers have been evaluated for their use in ACL reconstruction; however, …

Bioresorbable Film For The Prevention Of Adhesion To The Anterior Spine After Anterolateral Discectomy, Lisa S. Klopp, Jeffrey M. Toth, William C. Welch, Sangeeta Rao, Joseph W. Tai, Kevin A. Thomas, Simon Turner

Biomedical Engineering Faculty Research and Publications

Background context

The development of scar tissue and adhesions postoperatively is a natural consequence of healing but can be associated with medical complications and render reoperation difficult. Many biocompatible products have been evaluated as barriers or deterrents to adhesions.

Purpose

To evaluate the efficacy of a bioresorbable polylactide film as a barrier to adhesion formation after anterolateral discectomy.

Study design

Experimental study.

Methods

Seven, skeletally mature female sheep underwent a retroperitoneal approach to the anterolateral lumbar spine. A discectomy was performed at two levels with an intervening unoperated disc site. One site was treated with a polylactide film barrier (Hydrosorb …

Controlling Nonspecific Adsorption Of Proteins At Bio-Interfaces For Biosensor And Biomedical Applications, Harshil D. Dhruv

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Partitioning of poly(ethyleneglycol) (PEG) molecules in 2-D and 3-D systems is presented as a self-assembly approach for controlling non-specific adsorption of proteins at interfaces.

Lateral restructuring of multi-component Langmuir monolayers to accommodate adsorbing proteins was investigated as a model 2-D system. Ferritin adsorption to monolayers containing cationic, nonionic, and PEG bearing phospholipids induced protein sized binding pockets surrounded by PEG rich regions. The number, size, and distribution of protein imprint sites were controlled by the molar ratios, miscibility, and lateral mobility of the lipids.

The influence of PEG chain length on the ternary monolayer restructuring and protein distribution was also …