Engineering Commons^™

Automatic Detection Of Cone Photoreceptors In Split Detector Adaptive Optics Scanning Light Ophthalmoscope Images, David Cunefare, Robert F. Cooper, Brian P. Higgins, David F. Katz, Alfredo Dubra, Joseph Carroll, Sina Farsiu

Biomedical Engineering Faculty Research and Publications

Quantitative analysis of the cone photoreceptor mosaic in the living retina is potentially useful for early diagnosis and prognosis of many ocular diseases. Non-confocal split detector based adaptive optics scanning light ophthalmoscope (AOSLO) imaging reveals the cone photoreceptor inner segment mosaics often not visualized on confocal AOSLO imaging. Despite recent advances in automated cone segmentation algorithms for confocal AOSLO imagery, quantitative analysis of split detector AOSLO images is currently a time-consuming manual process. In this paper, we present the fully automatic adaptive filtering and local detection (AFLD) method for detecting cones in split detector AOSLO images. We validated our algorithm …

Longitudinal Imaging Of Microvascular Remodelling In Proliferative Diabetic Retinopathy Using Adaptive Optics Scanning Light Ophthalmoscopy, Toco Yuen Ping Chui, Alexander Pinhas, Alexander Gan, Moataz Razeen, Nishit Shah, Eric Cheang, Chun L. Liu, Alfredo Dubra, Richard B. Rosen

Biomedical Engineering Faculty Research and Publications

Purpose

To characterise longitudinal changes in the retinal microvasculature of type 2 diabetes mellitus (T2DM) as exemplified in a patient with proliferative diabetic retinopathy (PDR) using an adaptive optics scanning light ophthalmoscope (AOSLO).

Methods

A 35-year-old T2DM patient with PDR treated with scatter pan-retinal photocoagulation at the inferior retina 1 day prior to initial AOSLO imaging along with a 24-year-old healthy control were imaged in this study. AOSLO vascular structural and perfusion maps were acquired at four visits over a 20-week period. Capillary diameter and microaneurysm area changes were measured on the AOSLO structural maps. Imaging repeatability was established using …

Investigating Biosynthetic Steps Of An Angucycline Antifungal, S. Gabrielle Gladstone

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The species of bacterium Streptomyces sp. SCC-2136 which has the American Type Culture Collection index 55186 naturally produces two chemical compounds, labeled Sch 47554 and Sch 47555. These compounds were previously reported to posess antifungal activity. This thesis sets out to confirm the mechanism by which the bacterium produces these compounds; specifically which genes are responsible for producing the enzymes that make and shape the molecules.

The genes and enzymes that were characterized are the minimal polyketide synthase, the ketoreductase that specifically acts on the ninth carbon, the first-ring aromatase, the subsequent ring cyclase, and two oxygenases. Also elucidated …

Diffusion Modeling And Device Development For Peritoneal Membrane Oxygenation, Liana Hatoum

Department of Mechanical and Materials Engineering: Dissertations, Theses, and Student Research

Acute respiratory distress syndrome (ARDS) is a pulmonary disease that causes hypoxemia and respiratory failure. The mortality rate for ARDS ranges between 27% and 45%. Current treatments including mechanical ventilation and extracorporeal membrane oxygenation (ECMO) are often associated with high risk complications including barotrauma, infection, thrombosis, and hemorrhage. Alternative pulmonary support techniques are needed to improve the survival rate of patients suffering from ARDS. Previous studies introducing pure O₂ gas, perfluorocarbons and red blood cells into the intraperitoneal (IP) cavity have reported no effect or only a mild increase in oxygenation. Here we report peritoneal membrane oxygenation (PMO) using …

Low Cost, Carbon-Based Micro- And Nano-Structured Electrodes For High Performance Supercapacitors, Kryssia Pamela Díaz Orellana

All Dissertations

Advances in the development of sustainable, low-cost, and reliable energy storage technologies have become a high priority as the demand for high power, and high energy storage devices has risen with emerging technologies in electronics, transportation, and renewable energy systems. Supercapacitors, due to their relatively high energy density and power density, provide an attractive alternative to bridge the gap between conventional batteries and capacitors. Materials ranging from high surface area, inert carbons to Faradaic metal oxides and conducting polymers have been used to achieve a range of performance properties in supercapacitors. However, the development of new technologies faces many challenges, …

Lesion Identification And The Effect Of Lesion On Motor Mapping After Stroke, Ruixi Zhou

McKelvey School of Engineering Graduate Student Theses & Dissertations

Stroke is the most common cause of long-term severe disability and the motor system that is most commonly affected in stroke. One of the mechanisms that underlies recovery of motor deficits is reorganization or remapping of functional representations around the motor cortex. This mechanism has been shown in monkeys, but results in human subjects have been variable. In this thesis, I used a database that includes longitudinal behavioral and multimodal imaging data in both stroke patients and healthy controls for two research projects. Firstly, I improved an automatic lesion segmentation method to aid in the identification of the location and …

Atomic Force Microscopy Based Dna Analysis, Drew Creighton

Mechanical Engineering Undergraduate Honors Theses

This report explores dry and wet scanning of a surface and DNA pickup using an AFM, as well as fluorescent staining of DNA. Dry and wet scans of DNA were obtained using a cantilever AFM tip in tapping mode. Dry scans were found to be clearer than wet scans; however, the drying process was found to decrease the thickness of DNA 2–4 times less than its original thickness. Alternately, wet scans were found to be less clear than dry scans and introduced more noise into the images obtained. Additionally, DNA kept its initial thickness during wet scanning. DNA was capable …

Pulmonary Primary Blast Injuries, Moe Uddin

Honors Scholar Theses

Primary underwater explosions are particularly dangerous because of the water properties relative to air, and the resulting pathologies presents difficulty in determining their etiologies. The whole body is affected by the blast wave and the survivor is considered a trauma patient. The exact mechanism of injury is not well understood. In the literature, there are inconsistencies between the explosive and the resulting outcome of the experimental animals. Primary lung blast injuries is the leading cause of mortality in underwater explosions and this explores the different pathologies, symptoms, and treatments that are currently available.

Development Of Cubelab For Plant Microgravity Research, Sara N. Phillips

Morehead State Theses and Dissertations

A Thesis Presented to the Faculty of the College of Science and Technology Morehead State University in Partial Fulfillment of the Requirements for the Degree Master of Science by Sara N. Phillips on April 27, 2016.

Be Makes High Impact On 2016 Annual Ibe Conference | Biological Engineering, Usu College Of Engineering

College of Engineering News

The BE Department made a high positive impact at the 2016 International Annual Conference of theInstitute of Biological Engineering, which was held in Greenville, South Carolina, from April 7 through 9. BE was represented by ten students and six faculty members. PhD student Anna Doloman received an award (3rd place) for her research poster “Microbial Dynamics During Anaerobic Digestion of Algae Biomass and Sodium Acetate in an Upflow Anaerobic Sludge Blanket Reactor.”

A Roadmap To Safe And Reliable Engineered Biological Nano-Communication Networks, Justin W. Firestone

School of Computing: Dissertations, Theses, and Student Research

Synthetic biology has the potential to benefit society with novel applications that can improve soil quality, produce biofuels, grow customized biological tissue, and perform intelligent drug delivery, among many other possibilities. Engineers are creating techniques to program living cells, inserting new logic, and leveraging cell-to-cell communication, which result in changes to a cell's core functionality. Using these techniques, we can now create synthetic biological organisms (SBOs) with entirely new (potentially unseen) behaviors, which, similar to silicon devices, can sense, actuate, perform computation, and interconnect with other networks at the nanoscale level. SBOs are programmable evolving entities, and can be likened …

Design Of Medical Devices For Diagnostics In The Gastrointestinal System, Charles R. Welch

Department of Mechanical and Materials Engineering: Dissertations, Theses, and Student Research

This thesis presents the design, controls, and testing of two systems: a novel colonoscope locomotion design for diagnostics, and a biosensor capsule that implants a sensor in the small intestine. Each system requires special design considerations for use in the gastrointestinal system.

Colonoscopy procedures are recommended as a screening for colon cancer and related conditions after the age of 50. The need for an improved colonoscope that reduces the colonoscopy time and patient discomfort is apparent. The semi-autonomous device presented here could likely reduce the colonoscopy procedure time by allowing the physician to focus more on the diagnosis and less …

An Algorithm For Constrained One-Step Inversion Of Spectral Ct Data, Rina Foygel Barber, Emil Y. Sidky, Taly Gilat Schmidt, Xiaochuan Pan

Biomedical Engineering Faculty Research and Publications

We develop a primal-dual algorithm that allows for one-step inversion of spectral CT transmission photon counts data to a basis map decomposition. The algorithm allows for image constraints to be enforced on the basis maps during the inversion. The derivation of the algorithm makes use of a local upper bounding quadratic approximation to generate descent steps for non-convex spectral CT data discrepancy terms, combined with a new convex-concave optimization algorithm. Convergence of the algorithm is demonstrated on simulated spectral CT data. Simulations with noise and anthropomorphic phantoms show examples of how to employ the constrained one-step algorithm for spectral CT …

Gait And Tremor Monitoring System For Patients With Parkinson’S Disease Using Wearable Sensors, Shyam Vignesh Perumal

USF Tampa Graduate Theses and Dissertations

Typically, a Parkinson’s disease (PD) patient would display instances of tremor and bradykinesia (slowness of movement) at an early stage of the disease and later develop gait disturbances and postural instability. So, it is important to measure the tremor occurrences in subjects to detect the onset of PD. Also, it is equally essential to monitor the gait impairments that the patient displays, as the order at which the PD symptoms appear in subjects vary from one to another.

The primary goal of this thesis is to develop a monitoring system for PD patients using wearable sensors. To achieve that objective, …

Arakniprint: 3d Printing Of Synthetic Spider Silk To Produce Biocompatible And Resorbable Biomaterials, Ashley Ruben, Brianne Bell, Chase Spencer, Craig Soelberg, Dan Gil, Thomas Harris, Richard Decker, Timothy A. Taylor, Randolph V. Lewis

Student Research Symposium

At $3.07 billion in 2013, the 3D printing industry was projected to reach $12.8 billion in 2018 and exceed $21 billion by 2020 (Wohlers and Caffrey, 2013). A lucrative part of this expanding industry includes printing biocompatible medical implants, devices, and tissue scaffolds. A common problem encountered with traditional devices, implants, and tissue scaffolds is that they are not unique to the patient and lack the necessary strength and biocompatibility. To answer these demands, customizable devices are being produced from patient medical scans and CAD designs using 3D printers. These printers traditionally use thermoplastics because of the ease with which …

Secretion Of Bioplastic Polymers From Methanotrophic Bacteria Grown Using Natural Gas, Chad L. Nielsen, Charles D. Miller

Student Research Symposium

Biodegradable bioplastics show promise as a replacement for traditional plastics. Cost of production due to the cost of feedstocks and separation/purification processes are the main obstacles to widespread use of bioplastics. The possibility of reducing these costs through using methane gas as a feedstock and genetically transforming a methanotrophic bacterium to secrete bioplastics was investigated through experimentation. The bacteria are a promising option for bioplastic production.

A Numerical Approach To Investigate The Influence Of Deformable Blockages On Blood Flow In An Elastic Vessel, Tai-Hsien Wu

Research and Creative Activities Poster Day

In this work, we presented a new numerical approach to study the deformation of blockages and fluid properties in an elastic blood vessel. In computational hemodynamics, only few of the current numerical models considered the elasticity of vessels, and those models were difficult to extend to other topics like the deformation of blockages in elastic blood vessels. In addition, the approach that we employed is especially effective on visualization. A validation for the present method is carried out by comparing the simulation results with a theoretical prediction of the deformation of the pulmonary blood vessel in a steady flow. Subsequently, …

Sustained Cell Differentiation Of 2d H9 Human Embryonic Stem Cells Into Mesenchymal Stem Cells, Hannah M. Christian

UCARE: Research Products

This experiment consisted of the controlled differentiation of H9 embryonic stem cells to mesenchymal stem cells. Though this experiment was repeated twice and improvement was seen in these repetitions, the cells were only able to be partially differentiated. However, the morphology of the differentiated cells is similar to those of healthy adult mesenchymal stem cells.

The progression of the differentiation can be seen in the microscope slide photos below. Throughout the differentiation, there occurred a decrease in cell survival and reduction of cell growth, but an increase in mesenchymal stem cell morphology. Throughout the last week of the differentiation, very …

The Connectivity Domain: Analyzing Resting State Fmri Data Using Feature-Based Data-Driven And Model-Based Methods, Armin Iraji, Vince D. Calhoun, Natalie M. Wiseman, Esmaeil Davoodi-Bojd, Mohammad R. N. Avanaki, Zhifeng Kou

Biomedical Engineering Faculty Research Publications

Spontaneous fluctuations of resting state functional MRI (rsfMRI) have been widely used to understand the macro-connectome of the human brain. However, these fluctuations are not synchronized among subjects, which leads to limitations and makes utilization of first-level model-based methods challenging. Considering this limitation of rsfMRI data in the time domain, we propose to transfer the spatiotemporal information of the rsfMRI data to another domain, the connectivity domain, in which each value represents the same effect across subjects. Using a set of seed networks and a connectivity index to calculate the functional connectivity for each seed network, we transform data into …

Bending Stiffness In Cadaveric And Composite Long Bones Following Total Joint Replacement, Danielle Gehron, Anderson Adams Ms, Tatsuya Sueyoshi Md, Scott R. Small Ms

Rose-Hulman Undergraduate Research Publications

Several biomechanics studies have utilized commercially available replicate bone models as an alternative to cadaveric tissue specimens, in part due to their ease of handling and reduced expense. In an effort to validate the use of replicate bone specimens in biomechanics research, a number of studies have compared material properties of whole tibia and femur specimens to those of similar cadaveric specimens. Many of these validation studies have ascertained that the material properties of whole bone composite models fall within the range of those properties of cadaveric specimens, while offering reduced interspecimen variability. Current literature lacks, however, the direct comparison …

Molecular Combing Of Dna Nanofibers And Comparison To Electrospinning, Tanner L. Buresh

UCARE: Research Products

The goal of these experiments was to create DNA nanofibers through the method of molecular combing (MC) and then compare the MC fibers to fibers created with electrospinning (ES). The experiment was designed and initial samples were created. After confirming that the method would succeed in creating DNA fibers, several parametric studies were performed in order to optimize the experiment and create the most uniform fibers possible. The parametric studies were done on the following variables: substrate material, pH level of DNA solution, and DNA solution concentration. After completion of all experiments, it was determined that although fibers could be …

Biomarkers Used To Detect And Monitor Neurological Autoimmune Diseases, Robert Powers, Jay Reddy, Teklab Gebregiworgis, Chandirasegara Massilamany, Arunakumar Gangaplara, Zsolt Illes

Robert Powers Publications

Biomarkers of neurological autoimmune diseases are described, and methods of using such biomarkers also are described.

Autoimmune diseases arise from an inappropriate immune response by the body against Substances or tissues normally found in the body. Neurological autoimmune diseases are those autoimmune diseases that affect some aspect of the neurological system (e.g., the central nervous system or the peripheral nervous system). Biomarkers of one or more neu rological autoimmune diseases, especially those biomarkers that can be evaluated non-invasively, are useful in the art. Biomarkers of neurological autoimmune diseases are pro vided, and methods of using Such biomarkers also are pro …

Under The Needle: Ergonomic Issues With Lethal Injection Protocols, Gabriella Hancock

Human Factors and Applied Psychology Student Conference

The institution of capital punishment represents one of the most contentious issues affecting societies today; and while the practice is only implemented in 58 countries, the controversy affects the world at large as over 60% of the human population lives in nations that condone the death penalty (Hali, 2015). In the United States, people who support capital punishment believe the practice to be an effective crime deterrent for potential criminals and therefore a prospective protective measure for law abiding citizens. Moreover, advocates defend their position by forwarding the argument that executions are ‘humane’; that use of lethal injection ensures that …

Spring 2016 Biomedical Engineering Newsletter, Department Of Biomedical Engineering, Michigan Technological University

Department of Biomedical Engineering Newsletters

Table of Contents

• Focus on Cardiovascular Research
• BMES Rising Star Feng Zhao
• Magnetoelastic: Sensing more with less
• Portage Health/Michigan Tech Partnership
• Remembering Dr. Michael Neuman

Hand Control Of Bipedal Balance In Quiet Standing: Implementations For Lower Extremity Exoskeleton, Ala’A Al-Rashdan

Dissertations

Maintaining stable posture is important for humans, even though it is challenging because of our bipedal structure. One of the main balance related disorders is paraplegia due to spinal cord injury. People with a complete spinal cord injury have motor and sensory impairment that greatly reduces the ability to move their lower extremities. In recent years, lower extremity exoskeletons that apply torques generated by motors to the joints of the person have helped to them stand and walk.

This research is a part of an extended project to build a new exoskeleton for use by individuals with paraplegia due to …

Department Of Biological Systems Engineering Newsletter, Spring 2016

BSE Department Magazine

No abstract provided.

Optimization-Based Interactive Segmentation Interface For Multiregion Problems., John S H Baxter, Martin Rajchl, Terry M Peters, Elvis C S Chen

Robarts Imaging Publications

Interactive segmentation is becoming of increasing interest to the medical imaging community in that it combines the positive aspects of both manual and automated segmentation. However, general-purpose tools have been lacking in terms of segmenting multiple regions simultaneously with a high degree of coupling between groups of labels. Hierarchical max-flow segmentation has taken advantage of this coupling for individual applications, but until recently, these algorithms were constrained to a particular hierarchy and could not be considered general-purpose. In a generalized form, the hierarchy for any given segmentation problem is specified in run-time, allowing different hierarchies to be quickly explored. We …

Detecting And Screening Of The Prostate Cancer By Using An Optical Nanoporous Thin-Film Sensor, Salah Eldeen Mofleh Alzghoul

Doctoral Dissertations

Prostate cancer (PC) affects elderly men more than young men. The currently used cancer biomarker, prostate-specific antigen (PSA), highly overestimates PC population. Men with high PSA levels often have to go through unnecessary, but physically painful, and expensive prosesses, such as prostate biopsies. Finding a prostate cancer marker that is produced selectively by cancer, but not by normal prostate cells will increase the reliability of PC test. In 2006, our collaborator (Dr. Girish Shah) discovered a novel protein, referred as neuroendocrine marker (NEM), secreted only by malignant prostate cells and released in blood circulation.

To examine whether the combined NEM-PSA …

Hyaluronic Acid-Conjugated Liposome Nanoparticles For Targeted Delivery To Cd44 Overexpressing Glioblastoma Cells, Stephen L. Hayward, Christina L. Wilson, Srivatsan Kidambi

Department of Chemical and Biomolecular Engineering: Faculty Publications

Glioblastoma Multiforme (GBM) is a highly prevalent and deadly brain malignancy characterized by poor prognosis and restricted disease management potential. Despite the success of nanocarrier systems to improve drug/gene therapy for cancer, active targeting specificity remains a major hurdle for GBM. Additionally, since the brain is a multi-cell type organ, there is a critical need to develop an approach to distinguish between GBM cells and healthy brain cells for safe and successful treatment. In this report, we have incorporated hyaluronic acid (HA) as an active targeting ligand for GBM. To do so, we employed HA conjugated liposomes (HALNPs) to study …

Enhanced Bioactive Scaffolds For Bone Tissue Regeneration, Sonali Karnik

Doctoral Dissertations

Bone injuries are commonly termed as fractures and they vary in their severity and causes. If the fracture is severe and there is loss of bone, implant surgery is prescribed. The response to the implant depends on the patient's physiology and implant material. Sometimes, the compromised physiology and undesired implant reactions lead to post-surgical complications. [4, 5, 20, 28] Efforts have been directed towards the development of efficient implant materials to tackle the problem of post-surgical implant failure. [ 15, 19, 24, 28, 32]

The field of tissue engineering and regenerative medicine involves the use of cells to form a …