Engineering Commons^™

Designing A Week-Long Biomedical Engineering Summer Camp To Increase Young Students’ Interest And Self-Efficacy In Stem, Kayla Ney

Honors Program: Senior Projects (Public)

In order to combat the negative feelings many young students have towards STEM, I designed a week-long summer camp that teaches students about biomedical engineering as well as collaboration, communication, and confidence with STEM subjects. This work includes a literature review outlining what STEM is and current issues in STEM education, including disinterest in STEM and attrition in STEM degree programs. The literature review outlines current methods and ideas being utilized to combat these issues, namely, inclusive pedagogical strategies, and how some of these concepts can be applied to the summer camp. The curriculum document included outlines each activity, its …

Protease Resistant Growth Factor Formulations For The Healing Of Chronic Wounds, Tabitha Boeringer

USF Tampa Graduate Theses and Dissertations

Chronic wounds are those wounds which are refractory to treatment, often taking years to heal. These wounds are complex and may present with elevated protease levels, resulting in rapid degradation of growth factors, both native and augmented via treatment. This study’s focus was the development of a system to protect growth factors from protease mediated degradation.

The protective system consisted of chimeric fusion proteins developed to contain both a growth factor or known protease inhibitory peptide and an Elastin-Like-Peptide (ELP)component. The unique phase transitioning abilities of the ELP component allowed for the self-assembly of these chimeric fusion proteins into a …

Axonal Blockage With Microscopic Magnetic Stimulation, Hui Ye

Biology: Faculty Publications and Other Works

Numerous neurological dysfunctions are characterized by undesirable nerve activity. By providing reversible nerve blockage, electric stimulation with an implanted electrode holds promise in the treatment of these conditions. However, there are several limitations to its application, including poor bio-compatibility and decreased efficacy during chronic implantation. A magnetic coil of miniature size can mitigate some of these problems, by coating it with biocompatible material for chronic implantation. However, it is unknown if miniature coils could be effective in axonal blockage and, if so, what the underlying mechanisms are. Here we demonstrate that a submillimeter magnetic coil can reversibly block action potentials …

Engineered Full-Length Fibronectin-Hyaluronic Acid Hydrogels For Stem Cell Engineering., Sara Trujillo, Sebastian Vega, Kwang Hoon Song, Ana San Félix, Matthew J Dalby, Jason A Burdick, Manuel Salmeron-Sanchez

Henry M. Rowan College of Engineering Departmental Research

Mechanical cues induce a variety of downstream effects on cells, including the regulation of stem cell behavior. Cell fate is typically characterized on biomaterial substrates where mechanical and chemical properties can be precisely tuned; however, most of these substrates do not recapitulate the biological complexity of the extracellular matrix (ECM). Here, hydrogels are engineered for mechanobiological studies using two major components of the ECM: hyaluronic acid (HA) and fibronectin (FN). Rather than typical surface chemisorption of FN to substrates, the system contains full-length FN covalently crosslinked to HA throughout the hydrogel. The control over the mechanical properties of the hydrogel …

A Mathematical Framework For Estimating Risk Of Airborne Transmission Of Covid-19 With Application To Face Mask Use And Social Distancing, Rajat Mittal, Charles Meneveau, Wen Wu

Faculty and Student Publications

© 2020 Author(s). A mathematical model for estimating the risk of airborne transmission of a respiratory infection such as COVID-19 is presented. The model employs basic concepts from fluid dynamics and incorporates the known scope of factors involved in the airborne transmission of such diseases. Simplicity in the mathematical form of the model is by design so that it can serve not only as a common basis for scientific inquiry across disciplinary boundaries but it can also be understandable by a broad audience outside science and academia. The caveats and limitations of the model are discussed in detail. The model …

Partially Reprapable Automated Open Source Bag Valve Mask-Based Ventilator, Aliaksei Petsiuk, Nagendra G. Tanikella, Samantha Dertinger, Adam Pringle, Shane Oberloier, Joshua M. Pearce

Michigan Tech Publications, Part 1

This study describes the development of a simple and easy-to-build portable automated bag valve mask (BVM) compression system, which, during acute shortages and supply chain disruptions can serve as a temporary emergency ventilator. The resuscitation system is based on the Arduino controller with a real-time operating system installed on a largely RepRap 3-D printable parametric component-based structure. The cost of the materials for the system is under $170, which makes it affordable for replication by makers around the world. The device provides a controlled breathing mode with tidal volumes from 100 to 800 mL, breathing rates from 5 to 40 …

A Comparative Study Of Cannabinoids & Cb1 Receptor Gi Signaling, Haley Kristen Andersen

Theses and Dissertations

The legalization of medical marijuana has highlighted cannabinoids as a potential, opioid-free therapeutic option for pain management; however, the rise in illicit synthetic cannabinoid-induced toxicity has demonstrated the need to outline cannabinoid molecular signaling. The cannabinoid-type 1 (CB1) receptor is an endogenous G protein-gated receptor (GPCR), well-expressed in the central nervous system (CNS) associated with modulating neuronal activity. Cannabinoid agonists bind to the CB1 receptor resulting in the inhibitory G protein (Gi) complex to dissociate into two subunits, Gβγi and Gαi. The Gαi subunit inhibits adenylyl cyclase, leading to a decrease in cyclic adenosine monophosphate (cAMP). The Gβγi subunit activates …

A Centralised Multi-Objective Model Predictive Control For Biventricular Assist Devices, Vivian Koh Ci Ai

Student Works (2020-2029)

Heart failure is defined as failure of heart to deliver adequate blood flow rate to support tissue perfusion. Heart failure can be treated by implantation of a left ventricular assist device (LVAD) for left heart failure patients, or a biventricular assist device (BiVAD) for bi-heart failure patients. Since left heart failure predominates right heart failure, all commercial ventricular assist devices are LVADs. Therefore, two LVADs are frequently used as BiVAD for bi-heart failure patients. Clinically, the constant speed (CS) control of BiVAD fails to adapt pump flow rate according to physiological changes, thus putting patients at risk of ventricular suction …

Evaluation Of Hyaluronic Acid To Modulate Oral Squamous Cell Carcinoma Growth In Vitro, Jordan Ringer, Bryan Morrison, Karl Kingsley

Dental Medicine Faculty Research

© 2020 MDPI AG. All rights reserved. Introduction: Previous studies have demonstrated that glycosaminoglycan hyaluronic acid (HA) is capable of mediating oral tumor growth. Some clinical evidence has suggested reduced HA expression predicts poor cancer prognosis and that HA-chemotherapy conjugates may function synergistically to inhibit oral tumor growth. Other studies have found conflicting results that suggest enhanced CD44-HA-mediated growth and proliferation. Due to the lack of clarity regarding HA function, the primary goal of this study was to investigate the effects of HA using well-characterized oral cancer cell lines. Methods: Using several commercially available oral squamous cell carcinoma lines (and …

Effect Of Bout Length On Gait Measures In People With And Without Parkinson’S Disease During Daily Life, Vrutangkumar Shah, James Mcnames, Graham Harker, Martina Mancini, Patricia Carlson-Kuhta, John G. Nutt, Mahmoud El-Gohary, Carolin Curtze, Fay Horak

Electrical and Computer Engineering Faculty Publications and Presentations

Although the use of wearable technology to characterize gait disorders in daily life is increasing, there is no consensus on which specific gait bout length should be used to characterize gait. Clinical trialists using daily life gait quality as study outcomes need to understand how gait bout length affects the sensitivity and specificity of measures to discriminate pathological gait as well as the reliability of gait measures across gait bout lengths. We investigated whether Parkinson’s disease (PD) affects how gait characteristics change as bout length changes, and how gait bout length affects the reliability and discriminative ability of gait measures …

Optimal Parameter Values For Accurate And Repeatable Nanoindentation Of Human Trabecular Bone, Stephen Matthew Kmak

Master's Theses

Nanoindentation techniques have not been standardized for use on bone tissues, making comparison of bone material properties obtained via nanoindentation across studies difficult and unreliable. This study determined a set of optimal parameter values for thermal drift correction time, dwell time, and loading rate that can be used to obtain accurate and repeatable material properties from human femoral trabecular bone through experimentation and statistical analysis. All testing was conducted using a single nanoindenter on a single trabeculae, with the assumption that material properties within the individual trabeculae were internally consistent. Parameters not of interest during this study, such as ambient …

Association Of Liver Tissue Optical Properties And Thermal Damage, Vivek K. Nagarajan, Jerrold M. Ward, Bing Yu

Biomedical Engineering Faculty Research and Publications

Background and Objectives

Complete thermocoagulation of tumors is vital to minimize the risk of local tumor recurrence after a thermal ablation. Histological assessments are not real-time and require experienced pathologists to grade the thermal damage (histopathology) [Correction added on 21 January, 2020 after first online publication: After thermal damage in the preceding sentence, (histopathology) was added]. Real-time assessment of thermal tissue damage during an ablation is necessary to achieve optimal tumor ablation. In our previous studies, we found that continuous monitoring of the wavelength-averaged (435–630 nm) tissue absorption coefficient (µ_a) and the reduced scattering coefficient () during …

Parametric Nasopharyngeal Swab For Sampling Covid-19 And Other Respiratory Viruses: Open Source Design, Sla 3-D Printing And Uv Curing System, Nicole Gallup, Adam M. Pringle, Shane Oberloier, Nagendra G. Tanikella, Joshua M. Pearce

Michigan Tech Publications, Part 1

Access to nasopharyngeal swabs for sampling remain a bottleneck in some regions for COVID-19 testing. This study develops a distributed manufacturing solution using only an open source manufacturing tool chain consisting of two types of open source 3-D printing and batch UV curing, and provides a parametric fully free design of a nasopharyngeal swab. The swab was designed using parametric OpenSCAD in two components (a head with engineered break point and various handles), which has several advantages: i) minimizing print time on relatively slow SLA printers, ii) enabling the use of smaller print volume open source SLA printers, iii) reducing …

Purification Of Polluted Water At The Mubarek Gas Processing Plant Ltd Using By Ion Exchangers, Z. Sh. Nazirov

Technical science and innovation

The full chemical composition of the circulating and make-up water of the Mubarek Gas Processing Plant JSC “Uzbekneftigaz” has been investigated. Raw water sources are the Kui-Mazorsk reservoir and groundwater (artesian water).The amount of released impurities after their softening by passing through the layers of the KU-2-8 cation exchanger is determined. This method is simple, effective and energy-saving in water treatment, LLC "Mubarek" GPP.

Study On The Grinding Time Duration Impact On The Properties Of Paper From Alternative Raw Materials, Z. K. Galimova

Technical science and innovation

Both raw and recycled fiber materials are used for paper production. The increase in percentage use of the latter is due to their paper-forming properties, availability and low cost. The article explores the possibility of using pulp from the inner layer of mulberry twig bark. Mulberry twigs, after removing leaves, which are the main raw material in silk production, have no practical industrial application. Recycling waste - mulberry branches - for the production of pulp is therefore relevant as it is aimed at solving raw material and environmental problems. The purpose of this work is to use local raw materials …

Modification Of Composition Of Salinity Inhibitors Based On Organophosphonates And Acrylic Acid, B. Kadirov

Technical science and innovation

Chemical and mineralogical compositions of mineral deposits and acidic precipitations have been studied, and synergistically effective compositions of inhibitors of salt deposits have been selected based on -PO₃H₂ and COOH containing organic compounds. The article proposes a formulation of a mineral salts deposit inhibitor corresponding to regulatory indicators (not less than 90%) for the protection of municipal boiler houses and industrial equipment, comparative results of the industrial preparation Komperex-710. The obtained compositions were found to be effective inhibitors in concentrations of 8-12 mg/l in waters with calcium and magnesium chlorides Chimbaia, Turtkulia and Biruni with hardness of …

Sonoporation-Mediated Loading Of Trehalose In Cells For Cryopreservation., Charles W. Shaffer Iv, David F. Grimm, Michael A. Menze, Jonathan A. Kopechek

Undergraduate Research Events

Trehalose, a non-reducing disaccharide, is present in many microorganisms and metazoans. In these organisms, trehalose acts as a stress protectant and helps preserve lipid membranes of cells during states of desiccation and freezing. Trehalose is required on both sides of the cell membrane to achieve a significant cryoprotective effect. Specific loading methods for trehalose are required since this sugar is impermeant to mammalian cells. Trehalose loading in mammalian cells has been achieved by fluid-phase endocytosis and genetic modification for the expression of trehalose transporters, however cryoprotective outcomes are unable to compete with established methods of cryopreservation for mammalian cells. Sonoporation …

Single‐Molecule 3d Orientation Imaging Reveals Nanoscale Compositional Heterogeneity In Lipid Membranes, Jin Lu, Hesam Mazidi, Tianben Ding, Oumeng Zhang, Matthew D. Lew

Electrical & Systems Engineering Publications and Presentations

In soft matter, thermal energy causes molecules to continuously translate and rotate, even in crowded environments, thereby impacting the spatial organization and function of most molecular assemblies, such as lipid membranes. Directly measuring the orientation and spatial organization of large collections (>3000 molecules μm⁻²) of single molecules with nanoscale resolution remains elusive. In this paper, we utilize SMOLM, single‐molecule orientation localization microscopy, to directly measure the orientation spectra (3D orientation plus “wobble”) of lipophilic probes transiently bound to lipid membranes, revealing that Nile red's (NR) orientation spectra are extremely sensitive to membrane chemical composition. SMOLM images resolve …

Hexacyanoferrate-Based Nanocomposites For The Electrochemical Sensing Of Hydrogen Peroxide And Nicotine, Lee Pui Kee

Student Works (2020-2029)

Metal hexacyanoferrate (MeHCF) is a unique material that not only acquired immense research interest in electrochemical sensing field but also possesses potential as energy storage material. As such, the present thesis sought to investigate the facile method to synthesis MeHCF-based nanocomposites and explore its possible applications. First, comparative research on the synthesis of Prussian blue-polypyrrole (PB-PPy) nanocomposite by novel self-assembly (SA) method and conventional electrodeposition technique was performed. PB-PPy nanocomposites were prepared by the novel self-assembly method and via the electrodeposition approach. The nanocomposites were compared in term of surface morphology and its electrochemical and electrocatalytic characteristics. The results indicated …

The Glycocalyx And Its Role In Vascular Physiology And Vascular Related Diseases, Sheldon Weinbaum, Limary M. Cancel, Bingmei M. Fu, John M. Tarbell

Publications and Research

Purpose—In 2007 the two senior authors wrote a review on the structure and function of the endothelial glycocalyx layer (Weinbaum in Annu Rev Biomed Eng 9:121–167, 2007). Since then there has been an explosion of interest in this hydrated gel-like structure that coats the luminal surface of endothelial cells that line our vasculature due to its important functions in (A) basic vascular physiology and (B) vascular related diseases. This review will highlight the major advances that have occurred since our 2007 paper.

Methods—A literature search mainly focusing on the role of the glycocalyx in the two major areas described above …

Renal Proximal Tubular Nemo Plays A Critical Role In Ischemic Acute Kidney Injury, Sang Jun Han, Ryan M. Williams, Mihwa Kim, Daniel A. Heller, Vivette D'Agati, Marc Schmidt-Supprian, H. Thomas Lee

Publications and Research

We determined that renal proximal tubular (PT) NF-κB essential modulator (NEMO) plays a direct and critical role in ischemic acute kidney injury (AKI) using mice lacking renal PT NEMO and by targeted renal PT NEMO inhibition with mesoscale nanoparticle–encapsulated NEMO binding peptide (NBP MNP). We subjected renal PT NEMO–deficient mice, WT mice, and C57BL/6 mice to sham surgery or 30 minutes of renal ischemia and reperfusion (IR). C57BL/6 mice received NBP MNP or empty MNP before renal IR injury. Mice treated with NBP MNP and mice deficient in renal PT NEMO were protected against ischemic AKI, having decreased renal tubular …

Point-Of-Care Devices For Therapeutic, Medical And Environmental Applications, Alisha Prasad

LSU Doctoral Dissertations

Point-of-care testing (POCT) or Point-of-use (POU) devices or technologies are defined as testing aids that are capable for onsite use or testing. The key advantages of POCT are low sample volume, quick onsite diagnosis, high accuracy, and cost-effectiveness. POCT has the potential and the benefits to facilitate better health care management by rapid routine diagnosis and monitoring. To reach this goal, several researchers as well as the healthcare industry over a few years have conducted cutting edge research to bring science to technology by developing smart diagnostic devices capable of performing as per patient profiles and make personalized health care …

Machine Intelligence For Nerve Conduit Design And Production, Caleb E. Stewart, Chin Fung Kelvin Kan, Brody R. Stewart, Henry W. Sanicola Iii, Jangwook P. Jung, Olawale A. R. Sulaiman, Dadong Wang

Faculty Publications

Nerve guidance conduits (NGCs) have emerged from recent advances within tissue engineering as a promising alternative to autografts for peripheral nerve repair. NGCs are tubular structures with engineered biomaterials, which guide axonal regeneration from the injured proximal nerve to the distal stump. NGC design can synergistically combine multiple properties to enhance proliferation of stem and neuronal cells, improve nerve migration, attenuate inflammation and reduce scar tissue formation. The aim of most laboratories fabricating NGCs is the development of an automated process that incorporates patient-specific features and complex tissue blueprints (e.g. neurovascular conduit) that serve as the basis for more complicated …

Raman Spectra-Based Deep Learning: A Tool To Identify Microbial Contamination, Murali K. Maruthamuthu, Amir Hossein Raffiee, Denilson Mendes De Oliveira, Arezoo M. Ardekani, Mohit S. Verma

Purdue University Libraries Open Access Publishing Fund

Deep learning has the potential to enhance the output of in-line, on-line, and at-line instrumentation used for process analytical technology in the pharmaceutical industry. Here, we used Raman spectroscopy-based deep learning strategies to develop a tool for detecting microbial contamination. We built a Raman dataset for microorganisms that are common contaminants in the pharmaceutical industry for Chinese Hamster Ovary (CHO) cells, which are often used in the production of biologics. Using a convolution neural network (CNN), we classified the different samples comprising individual microbes and microbes mixed with CHO cells with an accuracy of 95%–100%. The set of 12 microbes …

Dictionary-Based Diabetes Distress Detection Mechanism Using Facebook Reactions, Marian Cynthia Martin

Student Works (2020-2029)

Over the last decade, the internet has paved the way for Facebook to become the digital hub for social networking transforming the ways of sharing information carrying rich and valuable information of users’ perspectives. Facebook support groups compromised of online diabetes communities facilitates users to connect to different people with similar conditions and share information wrapped in their own sentiments and emotions. Diabetes being a major life threatening health issue, results in diabetes distress among the online diabetes community. However, the detection of diabetes distress had been carried out manually using surveys and questionnaires, accentuating the lack of studies in …

An Affordable And Portable Palpable System For Sensing Breast Tissue Abnormalities, Cody J. Clarke

Montview Journal of Research & Scholarship

Due to the high cost of equipment and lack of trained personnel, manual palpation is a preferred alternative breast examination technique over mammography. The process involves a thorough search pattern using trained fingers and applying adequate pressure, with the objective of identifying solid masses from the surrounding breast tissue. However, palpation requires skills that must be obtained through adequate training in order to ensure proper diagnosis. Consequently, palpation performance and reporting techniques have been inconsistent. Automating the palpation technique would optimize the performance of self-breast examination, optimize clinical breast examinations (CBE), and enable the visualization of breast abnormalities as well …

Immediate Effects Of Dynamic Lycra® Orthosis On Sitting To Standing Ability Children With Cerebral Palsy / Ida Hasni Shaari, Ida Hasn Shaari

Student Works (2020-2029)

Children with Cerebral Palsy (CP) are highly exposed to postural mal-alignment which interrupt their functional movement pattern and the ability to attain certain functional activities, like walking and Children with Cerebral Palsy (CP) are highly exposed to postural mal-alignment which interrupt their functional movement pattern and the ability to attain certain functional activities, like walking and sitting-to-standing motion (STS). Orthoses are commonly prescribed to give good posture in these children. Yet, none of the orthoses has been found to be suitable in addressing trunkpelvis alignment in children with cerebral palsy, to enhance their STS performance. Therefore, this study was conducted …

A Simple, Realistic Walled Phantom For Intravascular And Intracardiac Applications., Hareem Nisar, John Moore, Roberta Piazza, Efthymios Maneas, Elvis C S Chen, Terry M Peters

Robarts Imaging Publications

PURPOSE: This work aims to develop a simple, anatomically and haptically realistic vascular phantom, compatible with intravascular and intracardiac ultrasound. The low-cost, dual-layered phantom bridges the gap between traditional wall-only and wall-less phantoms by showing both the vessel wall and surrounding tissue in ultrasound imaging. This phantom can better assist clinical tool training, testing of intravascular devices, blood flow studies, and validation of algorithms for intravascular and intracardiac surgical systems.

METHODS: Polyvinyl alcohol cryogel (PVA-c) incorporating a scattering agent was used to obtain vessel and tissue-mimicking materials. Our specific design targeted the inferior vena cava and renal bifurcations which were …

Emerging Gene-Editing Modalities For Osteoarthritis, Alekya S. Tanikella, Makenna J. Hardy, Stephanie M. Frahs, Aidan G. Cormier, Kalin D. Gibbons, Clare K. Fitzpatrick, Julia Thom Oxford

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Osteoarthritis (OA) is a pathological degenerative condition of the joints that is widely prevalent worldwide, resulting in significant pain, disability, and impaired quality of life. The diverse etiology and pathogenesis of OA can explain the paucity of viable preventive and disease-modifying strategies to counter it. Advances in genome-editing techniques may improve disease-modifying solutions by addressing inherited predisposing risk factors and the activity of inflammatory modulators. Recent progress on technologies such as CRISPR/Cas9 and cell-based genome-editing therapies targeting the genetic and epigenetic alternations in OA offer promising avenues for early diagnosis and the development of personalized therapies. The purpose of this …

Biomanufacturing Organized Collagen-Based Microfibers As A Tissue Engineered Device (Tend) For Tendon Regeneration, Yas Maghdouri-White, Nardos Sori, Stella Petrova, Hilary Wriggers, Nathan Kemper, Amrita Dasgupta, Kelly Coughenour, Seth Polk, Nick Thayer, Mario Rodriguez, Bill Simon, Anna Bulysheva, Kevin Bonner,, Steven Arnoczky, Samuel Adams, Michael Francis

Bioelectrics Publications

Approximately 800,000 surgical repairs are performed annually in the U.S. for debilitating injuries to ligaments and tendons of the foot, ankle, knee, wrist, elbow and shoulder, presenting a significant healthcare burden. To overcome current treatment shortcomings and advance the treatment of tendon and ligament injuries, we have developed a novel electrospun Tissue ENgineered Device (TEND), comprised of type I collagen and poly(D,L-lactide) (PDLLA) solubilized in a benign solvent, dimethyl sulfoxide (DMSO). TEND fiber alignment, diameter and porosity were engineered to enhance cell infiltration leading to promote tissue integration and functional remodeling while providing biomechanical stability. TEND rapidly adsorbs …