Digital Commons Network^™

Automated Sponge Segmentation With Mask R-Cnn On Arms Plate Images For Reef Monitoring, Mrunali Abhijit Thokadiwala

Master's Projects

Climate change-driven ocean warming and acidification are disrupting the ecological balance of coral reefs. Notably, these oceanic conditions are undermining coral health and accelerating their decline which is favoring some sponge species in outcompeting them for dominance. Although functional, these altered reefs destabilize the reef architecture, hinder nutrient cycling, and support fewer marine species. Thus, monitoring the growth and abundance of various sponges and understanding their roles at different stages of ecological succession in coral reefs is vital. Autonomous reef monitoring structures (ARMS) are often used for this purpose, but manual taxonomic analysis using their images is time-consuming, inconsistent and …

Ai-Based Dynamic Spectrum Allocation Model For Wireless Network Management, Sai Sashank Peddibhotla

Master's Projects

The growth of wireless communication has introduced challenges in the dynamic and resource contrived space which is the efficient utilization of bandwidth and spectrum. This research presents a model for dynamic spectrum allocation with the help of Convolutional Neural Network (CNN) for feature extraction and the Deep Q-Network (DQN) model’s reinforcement learning architecture. The CNN captures both spatial and temporal features of the network states and gives them to the DQN for optimal allocation decision making. This CNN-DQN architecture effectively implements spectrum resource allocation in wireless networks and adapts to resource allocation changes within performance bounds. The system’s performance is …

Improving Contextual Retrieval For Long Documents In Q & A Systems, Sakshi Garg

Master's Projects

With the vast amount of information available on the internet distributed across several lengthy documents, finding relevant information has become more important and challenging. The goal of this project is to develop advanced techniques to retrieve information from long texts in order to deliver accurate and relevant results while ensuring speed and efficiency. As part of this work, we employ techniques to address unique difficulties posed by large and complex documents. This paper presents a custom Retrieval-Augmented Generation (RAG) framework designed to improve contextual retrieval in long and multi-document settings. In this paper, we employ several techniques like summarization, semantic …

Evorgcn: Harnessing Esm-2 Evolutionary Embeddings With Relational Gcns For High-Fidelity Protein-Protein Interaction Prediction, Mohit Kunder

Master's Projects

Accurately predicting protein-protein interactions (PPIs) is essential for understanding cellular function and advancing biomedical discovery. We model PPIs as graphs, where nodes represent proteins and edges denote interactions. Using interaction data from the STRING database, we use two samples of it, namely the benchmark datasets—SH27K and SH148K—filtered by confidence score and annotated by interaction mode (multiple relations). In this project, we present EvoRGCN, a graph-based machine learning framework for PPI prediction that integrates both sequence-level (ESM-2 embeddings) and network-level information. We incorporate various Graph Neural Network architectures, including Graph Convolutional Networks, Graph Attention Networks, and Relational Graph Convolutional Networks. Our …

Synthetic Malware Generation Using Generative Ai, Phanidhar Sai Sravan Chandana

Master's Projects

Malware grows in numbers and complexity, evading conventional signature-and anomaly-based defenses and worsening extreme data sparsity and class imbalance problems for machine learning based detection. Generative models, specifically GANs conditioned on contextual embeddings like BERT have proved effective augmenting training corpora to improve classifier accuracy, but these approaches have largely produced family-specific samples In this paper, we propose a generalized augmentation scheme for generating robust malware embeddings for various families. We begin by extracting opcode sequences from 13 malware families and encoding them into three embedding methods: CountVectorizer, TF-IDF, and BERT’s ‘[CLS]‘ vectors. We therefore train standard GANs and Wasserstein …

Comparative Analysis Of Embedding Techniques With Clustering Algorithms For Malware Opcodes, Ayush Koul

Master's Projects

Malware detection and classification remain critical challenges in cybersecurity, especially as malicious software becomes increasingly sophisticated and prevalent. While much of the work involving embeddings has traditionally relied on supervised learning approaches, there is significant potential in leveraging unsupervised learning techniques to discern hidden structures in malware data. By employing embedding techniques to convert malware samples into high-dimensional vector representations, we can capture the subtle and complex patterns inherent in malicious code without relying on pre-labeled data. This unsupervised approach helps categorize malware into predefined malware families, greatly aiding in developing cybersecurity solutions. In contrast to traditional supervised models that …

Gen Ai For Malicious Network Data, Aneesh Maturu

Master's Projects

Though botnet attacks are on the rise, they also have become sophisticated and difficult to detect. Such a rising threat demands more and more sophisticated cybersecurity that leverages machine learning technology. Nevertheless, one of the biggest bottlenecks remains the unavailability of large and well-balanced datasets, particularly for malicious traffic, which hampers the efficacy of detection models. In an attempt to address this issue, our research utilizes Generative Adversarial Networks (GANs) to produce synthetic samples of botnet traffic from the CTU-13 dataset. While the majority of generative models have been targeting image data, we use GANs for a new application: generating …

Collaborative Governance In Practice: Evaluating Intergovernmental Relations Through The Santa Clara County Healthy Cities Initiative, Astrid J. Robles

Master's Projects

In the United States, intergovernmental relations (IGR) is rooted in the principles of American federalism, which focuses on the constitutional power dynamics between national, state, and local governments. While federalism outlines the structural framework, IGR specifically focuses on how federal, state, and local governments interact administratively, financially, and politically within the federal system. Beginning in the 1960’s, governments across the U.S. began to rely on non-governmental and private sector organizations for program implementation (Boyd & Fauntroy, 2000). This shift gave rise to the concept of collaborative governance, which expanded the scope of IGR by incorporating traditionally excluded groups from the …

Application Of Root Cause Analysis For Fall Prevention: A Quality Improvement Initiative For Older Adults In A Skilled Nursing And Long-Term Care Facility, Terrence Ranjo

Doctoral Projects

Falls in older adults are common and often have severe outcomes. They are the leading cause of fatal and non-fatal injuries among people aged 65 and older and continue to increase. Half of residents in nursing facilities fall annually, and one in every ten falls will lead to a severe injury. Federal regulations like the Centers for Medicare and Medicaid Services require long-term care (LTC) facilities to incorporate quality assurance performance improvement initiatives to address identified quality concerns in LTC facilities. Root cause analysis (RCA) can help clinicians identify several root causes of falls and guide clinicians in developing personalized …

Advocating For The Field Of Occupational Therapy Among High School Students, Linda Crabtree

Doctoral Projects

The field of occupational therapy (OT) is a healthcare field that is impactful on the lives of many individuals however there is currently a lack of awareness of the field of OT due to a lack of knowledge of and interest in OT among healthcare providers and the public (Richards and Valleé, 2020). The Aim of Research. The purpose of this project is to advocate for the field of OT and assess if an introductory presentation and hands-on lab about OT’s scope can improve the interest in OT among high school students in both rural and urban environments. Methods. The …

Determination Of Structural Factors Contributing To Protection Of Zinc Fingers In Estrogen Receptor Α Through Molecular Dynamic Simulations, Patricia B. Lutz, Wesley R. Coombs, Craig A. Bayse

Chemistry & Biochemistry Faculty Publications

The ERα transcription factor that induces tumor growth is a potential target for breast cancer treatment. Each monomer of the ERα DNA-binding domain (ERαDBD) homodimer has two conserved (Cys)₄-type zinc fingers, ZF1 (N-terminal) and ZF2 (C-terminal). Electrophilic agents release Zn²⁺ by oxidizing the coordinating Cys of the more labile ZF2 to inhibit dimerization and DNA binding. Microsecond-length molecular dynamics (MD) simulations show that greater flexibility of ZF2 in the ERαDBD monomer leaves its Cys more solvent accessible and less shielded from electrophilic attack by sulfur-centered hydrogen bonds than ZF1 which is buried in the protein. In the …

Phytochemical Analysis, Antioxidant, And Antibacterial Properties Of Partition Fractions Of Adansonia Digitata And Annona Muricata Extracts Using Chloroform, Ethyl Acetate, Ethanol, And Aqueous Solvent Systems, Fagbohun Oyenike Bushirat, Hassan Abdusalam Adewuyi, Sakariyau Adio Waheed, Maryam Nana Musa, Timothy God-Giveth Olusegun, Ayomide Babatunde Ishola, Agumage Idoko, Adeola Victor Kolawole, Adesanmi Adefunmilayo Oluwatuyi, Sarah Ngozi Agwasim

Chemistry & Biochemistry Faculty Publications

Adansonia digitata and Annona muricata are traditionally used medicinal plants with reported pharmacological properties. In this study, we aimed to elucidate the phytochemical composition, antioxidant activity, and antibacterial properties of partition fractions of Adansonia digitata and Annona muricata extracts obtained using chloroform, ethyl acetate, ethanol, and aqueous solvent systems. The plant extracts were successively partitioned using chloroform, ethyl acetate, ethanol, and aqueous solvent systems. Phytochemical analysis was performed using standard methods. Antioxidant activity was evaluated using FRAP and DPPH assays. Antibacterial activity was assessed using agar well diffusion and MIC determination. Phytochemical analysis revealed the presence of alkaloids (10.2-15.6%), flavonoids …

The Importance Of Solution Studies For The Structural Characterization Of The Enterovirus 5' Cloverleaf, Morgan G. Daniels, Meagan E. Werner, Xiaobing Zuo, Steven M. Pascal

Chemistry & Biochemistry Faculty Publications

Enteroviruses initiate genomic replication via a highly conserved mechanism that is controlled by an RNA platform, also known as the 5' cloverleaf (5'CL). Here, we present a biophysical analysis of the 5'CL conformation of three enterovirus serotypes under various ionic conditions, utilizing CD spectroscopy, size-exclusion chromatography, and small-angle X-ray scattering. In general, a tendency toward a smaller monomeric hydrodynamic radius in the presence of salts was observed, but the exact structural signature of each 5'CL varied depending upon the serotype. Rhinovirus B14 (RVB14) exhibited at least two monomeric conformations and a low propensity for dimerization, while poliovirus 1 (PV1) showed …

Metal-Organic Thin Film Coated On Optical Fiber, Nahideh Salehifar

Doctoral Dissertations

This dissertation explores the development of metal-organic framework (MOF)-based optical fiber sensors for detecting volatile organic compounds (VOCs) at low concentrations (parts-per-billion to parts-per-million). In the first part of the study, theoretical calculations were performed using effective medium approximation (EMA) models, including Lorentz–Lorentz, Maxwell–Garnett, and Bruggeman equations, to predict the refractive index changes of MOFs upon gas adsorption. These models were applied to MOFs such as ZIF-7, ZIF-8, ZIF-90, MIL-101(Cr), and HKUST-1 to evaluate their potential for gas sensing.

In the second part of the dissertation, experimental work was conducted to validate the theoretical predictions. MOF-coated optical fibers were fabricated …

Deep Learning And Adaptive Clustering Approaches For Flood Prediction And Efficient Sensor Placement In Missouri, Fahimeh Sharafkhani

Doctoral Dissertations

Floods represent formidable natural calamities, posing a significant threat to communities and infrastructure due to their unpredictable and often devastating consequences. The occurrence of floods is influenced by a convergence of meteorological, hydrological, and geographical factors, resulting in changes to the patterns of rising water levels. Machine learning models have emerged as favored tools in recent times for modeling water levels and enhancing the precision of flood predictions. This research employs both supervised and unsupervised machine learning models, with the main objective of improving the accuracy of flood predictions and sensor placement. Four distinct deep learning models are used to …

Experimental Study Of Defects In Coaxial Wire-Based Laser Metal Deposition, Remy Mathenia

Doctoral Dissertations

This work seeks to improve the usability and capability of coaxial wire-based laser metal deposition (LMD) through the experimental study of process parameters on output geometry, directional effects, and defect formation. Wire-based LMD is a directed energy deposition (DED) strategy that uses a focused laser heat source to melt and fuse metal wire as it is deposited. This process is used to build parts layer-by-layer until a desired geometry is accomplished. LMD enables the creation of complex components at a high build rate with low material and energy waste. This work focuses on the deposition of titanium wire in the …

The Structure, Properties And Dissolution Behaviors Of Phosphate Glasses, Han Zhang

Doctoral Dissertations

The poor chemical durability remains a critical challenge for the application of phosphate glasses. This study investigates the compositional influences on the structure, properties and chemical durability of Li2O-ZnO-P₂O₅ glasses. Their structural characteristics were analyzed utilizing high-performance liquid chromatography, Raman spectroscopy, and X-ray photoelectron spectroscopy. The incorporation of (Li2O+ZnO) in LZeq glasses depolymerizes the phosphate network. In LZ40P and LZ45P glasses, Li⁺ initially replaces Zn²⁺ associated with non-bridging oxygens (NBOs) in Q² tetrahedra. Once the substitution in Q² is complete, further Li⁺ incorporation leads to the replacement of Zn²⁺ in Q^{1 …}

Design Of Real-Time And Energy-Efficient Driver Assist Systems Using Electroencephalogram And Neuromorphic Computing, Nathan Alan Lutes

Doctoral Dissertations

Despite the technological breakthroughs in advanced driver assist systems, distracted driving persists as a major challenge to roadway safety. This investigation advances the body of knowledge towards a solution by developing an individualized driver-state detection method using electroencephalogram (EEG) and neuromorphic computing to provide a less invasive and more energy efficient ADAS solution. It furthermore explores the changes in brain functional connectivity under distracted conditions to better understand brain state information that could be used for neuro-feedback intervention systems. The first contribution introduces the concept of using Convolutional Spiking Neural Networks (CSNNs) for recognition of patterns with movement-intention predictive power …

Development, Characterization And Testing Of Traditonal And Advanced Nuclear Fuel Cladding Materials, Joshua Eddy Rittenhouse

Doctoral Dissertations

Kanthal D and FeCrAl alloys in general, are prospective candidates as accident tolerant nuclear fuel cladding materials. The work presented herein focuses on applying two techniques of severe plastic deformation, equal channel angular pressing (ECAP) and high-pressure torsion (HPT), as means of grain refinement to improve irradiation resistance. Samples of as-received, ECAP, and HPT processed Kanthal D were exposed to neutron irradiation to a dose of 2 DPA at two different temperatures, 300 °C and 500 °C. Detailed characterization was performed including mechanical and microstructural, and several positive improvements with regards to irradiation resistance were identified in the ECAP and …

Synthesis And Analysis Of Materials For Quantum Devices, Mathew Pollard

Doctoral Dissertations

Quantum materials play a pivotal role in the advancement of next-generation technology. Superconducting quantum computing, dissipationless spintronics, or valleytronics offer promising ways forward beyond traditional chip miniaturization. Josephson Junctions (JJs) have already revolutionized quantum information and high precision detectors. Quantum systems, however, are either hard to control, produce, and/or maintain. This calls for a better understanding of microscopic properties and tuning of these quantum states.

In this work, we experimentally investigated growth methods to control the electric and magnetic properties of Topological Insulator (TI) Sb2Te3 through Cr-doping. Our results demonstrate the onset of a Magnetic Topological Insulator (MTI) and have …

Enhanced Optimization Of Mass Transfer For Carbon Capture And Wastewater Remediation In Algal Systems Through Algorithmic And Bioprocessing Techniques, Peter Ofuje Obidi

Doctoral Dissertations

The scalability and industrial deployment of algal cultivation systems are limited by suboptimal mass transfer, constraining their effectiveness in carbon capture and wastewater remediation. This research investigated these challenges through integrated optimization methodologies that combine algorithmic frameworks with enhanced bioprocessing techniques to enhance efficiency, economy, and scalability. A System-of-Systems (SoS) meta-architecture was developed using genetic algorithms and fuzzy assessor functions to demonstrate a pathway toward cost reduction. Rigorous mechanical and chemical characterizations were quantitatively analyzed to reveal existing optimization strategies and further evaluated the best strategies to use in enhancing mass transfer for improved biomass yield. The work also integrates …

Products Of Laser Ablated Actinides And Actinide Comparators In The Presence Of Carbonyl Sulfide Characterized By Rotational Spectroscopy, Joshua Edward Isert

Doctoral Dissertations

As the consumption of energy continues to rise globally, so too has interest in alternative energy sources such as nuclear power. However, a fundamental understanding of the actinide series is needed in order to safely and efficiently utilize these elements. Rotational or microwave spectroscopy, depending on if one is speaking of the physical outcome of the experiment or the region of the electromagnetic spectrum being operated in, is a gas phase molecular study utilized for structural determination. This technique can be utilized to gain an in depth understanding of bonding within the actinide series. However, when studying species that are …

Tailoring Selected Aerogels To Targeted Applications, Stephen Yaw Owusu

Doctoral Dissertations

Aerogels are ultra-lightweight, porous solid materials characterized by a three-dimensional nanostructured network. Owing to their exceptional physical and chemical properties, aerogels have garnered considerable attention within the materials science community and were recognized by IUPAC in 2022 as one of the top ten emerging technologies in chemistry. Although numerous aerogels have been synthesized, only a few have been effectively tailored for specific applications. Optimizing the properties of known aerogels for targeted uses remains challenging. This dissertation investigates strategies for tailoring aerogels derived from isocyanate-benzoxazine, benzodiazine, and phenolic resins to meet the requirements of various advanced applications. The approaches employed include …

Advancements In Signal Processing And Image Reconstruction For Active Microwave Thermographic Measurements, Logan Martin Wilcox

Doctoral Dissertations

Active microwave thermography, or AMT, is a coupled electromagnetic-thermographic nondestructive testing and evaluation technique. AMT has found success in a variety of inspection needs in the aerospace, space, and infrastructure fields due to its unique type of thermal excitation. During an AMT inspection, a specimen is exposed to microwave energy from a radiating source (i.e., an antenna). This exposure to microwave energy results in dielectric/magnetic heating, which causes an increase in temperature and potential defect indications to manifest on an inspection surface (which is measured via an infrared camera). Due to the use of an antenna, there is a spatially …

Deep Learning Architecture Design For Nano-Satellite Image Super-Resolution, William Everette Symolon

Doctoral Dissertations

Increasing threats to U.S. national security satellite constellations have resulted in an increased interest in constellation resilience and satellite redundancy. NanoSats have contributed to commercial, scientific and government applications in remote sensing, communications, navigation, and research. They also have the potential to enhance satellite constellation resilience. However, the inherent size, weight, and power limitations of NanoSats enforce constraints on imaging hardware; the small lenses and short focal lengths result in imagery with low spatial resolution, which limits the utility of CubeSat images for military planning purposes and national intelligence applications. This research proposed a deep learning architecture capable of enhancing …

Investigating The Effects Of Fly Ash On The Properties Of Silica-Deficient High Alumina Materials, Sai Akshay Ponduru

Doctoral Dissertations

This research is made up of five studies mainly focused on attaining sustainability in high alumina cements like calcium aluminate cement (CAC) and calcium sulfoaluminate belite cements (CSAB) by partially replacing them with additives and supplementary cementitious materials (SCMs) like fly ash (FA). The first study focused on understanding the reaction kinetics of CAC and FA binders at different replacement levels (i.e. between 10%-to-50% by mass) and their effect on mechanical properties. It was also shown that the reactive nature of FAs can be determined by calculating a single parameter called number of constraints (nc) derived from topological constraint theory. …

Data-Driven Mulitiscale Modeling Of Electrochemical Transport, Non-Linear Electrical Contact, And Additive Manufacturing Processes, Emmanuel Olugbade

Doctoral Dissertations

The growing demand for high-efficiency energy systems and advanced manufacturing technologies requires predictive frameworks that link atomic-scale physics with engineering-scale performance. This dissertation develops a unified multiscale modeling approach that integrates molecular dynamics, density functional theory, finite-element analysis, and machine learning to connect structure, transport, and performance across materials and processes. Depending on the interactions involved, the framework employs loose coupling for parameter transfer, tight coupling for two-way feedback, and hybrid coupling where machine-learning surrogates accelerate high-fidelity simulations while retaining physical interpretability. In electrochemical systems, an XGBoost-enhanced single-particle model reproduces P2D-level electrolyte potential dynamics at roughly one-hundredth the computational cost, …

Characterization And Deportment Of Anode Impurities In Copper Electrorefining, Charles Michael Campbell

Doctoral Dissertations

The objective of this research was to study the deportment of the group 15 elements, arsenic, antimony and bismuth during copper electrorefining. Samples were collected from six industrial copper anodes with different compositions. Specimens were physically characterized and electro refined to understand the differences in the behavior of selected impurities. Inclusions in the cast metal structures were characterized using automated scanning electron microscopy and energy dispersive spectroscopy to measure and correlate their size, shape and composition. Arsenic and lead were found to have a positive correlation between concentration and size of inclusions. Using wavelength dispersive spectroscopy, multiphase inclusions were examined, …

Unraveling Visible Spectra Of S-Type Stars: The F3Δ–A3Δ (Α System) And E3Π–A3Δ (Β System) Band Systems Of Zro, Manish Bhusal, Peter Bernath, Jacques Liévin

Chemistry & Biochemistry Faculty Publications

ZrO has many low-lying states, and its spectra are essential for the characterization of S-type stars. A high-resolution emission spectrum recorded with a Fourier transform spectrometer at the National Solar Observatory is used for the analysis. The 0–0 and 1–0 bands of the f³Δ-a³Δ system (α system) and the 0–0 band of the e³Π-a³Δ system (β system) have been rotationally analyzed using the modern spectral fitting program PGOPHER. New ab initio calculations of transition dipole moments have been performed to determine the band strengths. These band strengths are used to produce line lists that are suitable for the …

M Star Opacities: The B³Π–X³Δ Band System Of Tio, Peter F. Bernath, Manish Bhusal, Mirek R. Schmidt

Chemistry & Biochemistry Faculty Publications

The spectra of titanium monoxide (TiO) are used to classify M stars. TiO experimental cross sections based on a high-resolution emission spectrum recorded with a Fourier transform spectrometer at the National Solar Observatory are used for the analysis of the TiO B³Π–X³Δ transition (𝛾' system). The 3–2 and 4–3 vibrational bands are analyzed for the first time, and the analysis of the 2–1 band is revised. The transition dipole moment function from an ab initio calculation is used to calculate the band strengths. These band strengths are used to produce a B³Π–X³Δ line list for the vibrational levels v' ⩽ …