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Plant Disease Detection Through Convolutional Neural Networks: A Survey Of Existing Literature, Best Practices, And Implementation, Kevin Label

Master's Theses

In the United States alone, common diseases spread among plants account for billions of dollars lost in crop yield each year. This issue is exacerbated in countries with less infrastructure to defend against crop epidemics, and can lead to famine and forced migration. Farmers can seek the help of plant pathology experts to defend against diseases and detect crop irregularities early on. However, access to experts can be difficult, and even those trained in the field may miss symptoms before it is too late. To assist in early disease detection, a number of papers have been released on the potential …

Estimating And Modeling Transpiration Of A Mountain Meadow Encroached By Conifers Using Sap Flow Measurements, Simon Joseph Marks

Master's Theses

Mountain meadows in the western USA are experiencing increased rates of conifer encroachment due to climate change and land management practices. Past research has focused on conifer removal as a meadow restoration strategy, but there has been limited work on conifer transpiration in a pre-restoration state. Meadow restoration by conifer removal has the primary goal of recovering sufficient growing season soil moisture necessary for endemic, herbaceous meadow vegetation. Therefore, conifer water use represents an important hydrologic output toward evaluating the efficacy of this active management approach. This study quantified and evaluated transpiration of encroached conifers in a mountain meadow using …

Aryl Halides As Potential Components For O-Aryl-N-(9'-Acridinyl)-Hydroxylamines Antitumor Agents, Erin Munder

Master's Theses

Acridine derivatives such as m-amsacrine (m-AMSA) are known to intercalate deoxyribonucleic acid (DNA). Their action targets the growth, function, and replication of cancer cells. Because of this, they are primarily used as anticancer and antimalaria drugs. Unfortunately, due to the low half-life m-AMSA possesses because of the ease of hydrolysis of the carbon 9-nitrogen bond (C9-N bond), large concentrations of the drug are needed to be pharmaceutically effective. This results in a large concentration of toxic aniline byproducts. To reduce the rate of hydrolysis but still maintain the binding to DNA, a modification to the m-AMSA structure was made. A …

Effects Of Nitrogen Management And Cultivar On Strawberry Production Under Disease Pressure, Kamille A. Garcia-Brucher

Master's Theses

Effects of nitrogen management and cultivar on strawberry production under disease pressure

Kamille Garcia-Brucher

California strawberry growers face increasing regulatory pressures to manage nitrogen (N) applications in their production system. Standard practice in the California strawberry industry is to apply a synthetic pre-plant controlled release fertilizer (CRF) to ensure the crop has sufficient N during winter establishment. Some research from the UC Cooperative Extension suggests this practice is not efficient at delivering N to the crop since most of the N is released from CRF before strawberry crop N uptake is significant. Another concern for California strawberry growers is loss …

Classifying Electrocardiogram With Machine Learning Techniques, Hillal Jarrar

Master's Theses

Classifying the electrocardiogram is of clinical importance because classification can be used to diagnose patients with cardiac arrhythmias. Many industries utilize machine learning techniques that consist of feature extraction methods followed by Naive- Bayesian classification in order to detect faults within machinery. Machine learning techniques that analyze vibrational machine data in a mechanical application may be used to analyze electrical data in a physiological application. Three of the most common feature extraction methods used to prepare machine vibration data for Naive-Bayesian classification are the Fourier transform, the Hilbert transform, and the Wavelet Packet transform. Each machine learning technique consists of …

Racial Bias In Pain Perception And Treatment Among Healthcare Pre-Professionals, Raegan Bishop

Master's Theses

The novel coronavirus has impacted Black Americans who have had higher rates of infection, hospitalization and death compared to White Americans. Although higher rates of obesity and other chronic diseases like diabetes and high blood pressure have been implicated and, likely, play a substantial role in the disparity, racial biases among health care providers that affect the provision of care have yet to be examined. There is some evidence that racial bias among healthcare providers affects pain outcomes among Black American women with healthcare providers prescribing Black women pain medication less often than to White women (Badreldin, et. al., 2019; …

Using Praise To Increase Visual Attending In An Asynchronous Online Learning Environment: An Eye Tracking Study, Andrew J. Rozsa Iii

Master's Theses

With the emergence of online courses in the mid-1990s, the number of students enrolled in online courses has been growing at an exponential rate (Schwirzke, Vashaw, & Watson, 2018). This trend brings with it new problems, such as familiarity with evidence-supported behavioral techniques that will maintain student engagement and improve likelihood of academic success in online learning environments. The purpose of the present study was to examine how the use of praise may affect visual engagement with video lectures with the assistance of commercially available eye tracking technology. A secondary objective of the study was to identify how praise affects …

Third Trimester Plasma Metabolites Associated With Gestational Diabetes: An Ancillary Analysis Of The Healthy Beginnings Trial, Rodrigo D. Rosario

Master's Theses

Introduction: Gestational Diabetes Mellitus (GDM) results in complications affecting both mother and child. The implementation of metabolomics to assess metabolite alterations is needed to better understand its etiology. Prior research by our lab in first trimester samples of GDM patients indicated altered fatty acid utilization and purine degradation products.

Objective: Metabolomics analysis was conducted on third trimester (28 -35 weeks) plasma samples to observe differences associated with GDM.

Methods: Fifty samples taken from the Healthy Beginnings trial and their corresponding data were included in the study. Plasma samples were analyzed using UPLC-MS with metabolomic assays for primary metabolomics, aminomics, and …

Potential Impact Of Contour Bunds On Diclofenac Removal For Stormwater Control In Rangeland Applications, Braden Alan Whitehead

Master's Theses

Diclofenac (DCF) and other emerging contaminants have been found in environments worldwide. These contaminants may enter the environment due to the application of treated wastewater, biosolids and direct excrement related to veterinary application. Leakage from the soils toward the groundwater is largely controlled by sorption and microbial degradation. Most studies on the environmental fate of DCF have focused on degradation during wastewater treatment processes. However, little is known about their behavior in soil. In this study, the combined effect of adsorption and degradation of diclofenac has been investigated in four (4) 24 ft³ agricultural soil-filled beds designed to mimic …

A Study Of Non-Computing Majors' Growth Mindset, Self-Efficacy And Perceived Cs Relevance In Cs1, Jae Hyuk Yoo

Master's Theses

As the demand for programming skills in today’s job market is rapidly increasing for disciplines outside of computing, CS courses have experienced spikes in enrollment for non-majors. Students in disciplines including art, design and biological sciences are now often required to take introductory CS courses. Previous research has shown the role of growth mindset, self-efficacy and relevance in student success within CS but such metrics are largely unknown for non-majors. In this thesis, we surveyed non-majors in CS1 at Cal Poly, San Luis Obispo during the early and late weeks of the quarter to gain insights on their growth mindset, …

Subnational Map Of Poverty Generated From Remote-Sensing Data In Africa: Using Machine Learning Models And Advanced Regression Methods For Poverty Estimation, Lionel N. Hanke

Master's Theses

According to the 2020 poverty estimates from the World Bank, it is estimated that 9.1% - 9.4% of the global population lived on less than $1.90 per day. It is estimated that the Covid-19 pandemic further aggravated the issue by pushing more than 1% of the global population below the international poverty line of $1.90 per day (WorldBank, 2020). To provide help and formulate effective measures, poverty needs to be located as exact as possible. For this purpose, it was investigated whether regression methods with aggregated remote-sensing data could be used to estimate poverty in Africa. Therefore, five distinct regression …

Examination Of Methylation Status And Occupancy Of Dna Methylation Modifying Proteins On Regulatory Regions Of The Dax-1 Gene, Caroline P. Riedstra

Master's Theses

Epigenetic modifications influence gene expression and thereby play a pivotal role in development and disease. Misregulation and mutations in the DAX-1 gene, or Dosage-Sensitive Sex Reversal, Adrenal Hypoplasia Congenita, Critical Region on the X chromosome, gene 1, have been implicated in Adrenal Hypoplasia Congenita (AHC) and Dosage Sensitive Sex Reversal (DSS). The orphan nuclear hormone receptor DAX-1 is expressed predominantly in tissues such as the testes, ovaries, breast, adrenal cortex, and lung. Critically, DAX-1 may serve as an indicator of aberrant growth in these tissues. Here we hypothesize that DAX-1 is epigenetically regulated, specifically in cancer cells, thereby reducing its …

Effect Of Borrelia Burgdorferi On The Amyloid-Beta And Phospho-Tau Markers And Oxidative Stress Response Of Neuroblastoma Cells, Dina Elzohiry

Master's Theses

In Alzheimer's disease (AD), the neurons are injured and mostly subjected to death throughout the brain, interconnections between neural networks may detach, and several regions of the brain begin to shrink in size. Amyloid-Beta (Aβ) and phospho-tau (p-Tau) are considered as main hallmarks of AD. Lyme-causing bacteria Borrelia burgdorferi can invade central nervous system resulting in neurological disorders. To evaluate how B. burgdorferi bacteria can contribute to the development and/or progress of AD, protein expression of Amyloid-Beta aggregates and p-Tau protein tangles were assessed before and after infection with B. burgdorferi in BE2C and Kelly neuroblastoma cell lines. To assess …

The Relationship Between Vitamin D Intake, Sun Exposure, Handgrip Strength And Hg Alc Levels In College-Age Adults, Janelle Melancon

Master's Theses

Vitamin D is known for its importance to bone health and calcium metabolism and plays a role in insulin resistance. Recent research has recognized its role in insulin secretion, inflammatory response, and adipose tissue changes as possible reasons for its association with insulin resistance and cardiovascular disease. The CDC (2019) reported that 20% of adolescents are now living with prediabetes. Most individuals with prediabetes progress to type 2 diabetes within ten years. Because many studies have focused on adults of all ages, it is important to research young adults. This study aimed to determine prevention efforts; therefore, the younger adult …

The Role Of Notch1 And Notch3 In Adult Stem Cell Osteogenic Differentiation, John Bradley Cart

Master's Theses

Human adipose-derived stem cells (hASCs) have significant therapeutic potential due to their ability to self-renew, differentiate down multiple lineages, and modulate the immune system. In addition to these many benefits, hASCs boast a minimally invasive harvesting procedure, making them a readily available cell source for stem cell research and tissue regeneration (Ock, et al. 2016) (Abdi, et al. 2008). Despite their broad use, very little is known about the mechanisms that control cell fate.


One way to enhance our mechanistic understanding of differentiation is through the systematic examination of the signaling pathways. The Notch signaling pathway is a highly conserved, …

Exosense: A Novel Technology For Selective Purification Of Cd63+ Exosomes From Neural Cells, Kristen Hope Hutson Truelove

Master's Theses

Exosomes are extracellular, cell signaling microvesicles that contain unique genomic and proteomic signatures reflective of the host cell’s pathophysiological conditions. In recent years, the study of exosomes has increased tremendously because many have been recognized as molecular biomarkers with the potential to advance methods of disease diagnostics and therapeutics as well as contribute to physiological analyses of multiple organism types. With the promising potential that exosomes offer to the field of molecular biology, it is vital to establish an efficient and consistently reliable mechanism of exosome isolation from biological samples. Many isolation techniques currently available typically yield exosome samples with …

Exploring The Influence Of Diurnal Forcing On Tidal Inlet Exchange And The Impact On The Movement Of Oxygen Depleted Waters In The Mississippi Sound And Bight Region, Courtney Bouchard

Master's Theses

A small yet notable hypoxic event manifests east of the Birdfoot Delta in the Mississippi Sound and Bight (MSAB). The shallow shelf environment of the MSAB is affected by a host of complex physical interactions and separating the influences of each process is difficult to accomplish with in-situ data alone. A physical model using high-resolution atmospheric forcing has been developed which provides insights into the physical interactions in this coastal marine system heavily influenced by freshwater plumes and diurnal wind forcing. Twin experiments using a high temporal (hourly) and spatial (0.01 deg) resolution meteorological analysis product, along with a temporally …

The Shortcomings Of Maize: Using Tipu To Assess Maize Consumption And Its Impact On Stature And Limb Proportions Among The Maya, Peter Mercier

Master's Theses

A reliance on maize among the ancient and modern Maya has been reasoned to cause short statures and short legs compared to overall height. The goal of this study was to test this proposition using a sample of contact period Maya from the site of Tipu in western Belize. Long bone length data from 100 individuals were compared to that from two other prehistoric maize agriculturalist societies: the Schild site in Illinois and Pecos Pueblo in New Mexico.

Four hypotheses were tested: 1) Tipu would be the shortest, 2) Tipu would have the shortest femora relative to tibiae, 3) Tipu …

Analyzing The Consistency Of Scoring Porotic Hyperostosis From 3d Scans, Carson Rouse

Master's Theses

The use of 3D scans is becoming more and more common in the field of bioarchaeology. They alleviate the need to travel, allow for larger sample sizes, and can help preserve bones with pathologies on them which make them more fragile. Though there are major benefits with using 3D scanning of human remains, there is a lack of studies which examine whether or not traditional pathology scoring methods can be used to consistently gather the same data from these 3D scans. This project examines how consistently six researchers of varying experience levels scored porotic hyperostosis from 25 3D scans on …

Polycyclic Aromatic Hydrocarbons And The Microbiomes Of Two Benthic Species, Samantha Ells

Master's Theses

The presence of oil has been shown to affect the microbiomes of the water column, sediments, and organisms, both by altering the diversity and the composition of those microbial communities. If the microbiome is altered it may no longer provide benefits to its host organism, impacting its ability to survive. Thus, it is important to understand the effects of large-scale contamination events including the Deepwater Horizon oil spill. This study set out to examine the effects of oil exposure on the microbiome of two benthic species, southern flounder (Paralichthys lethostigma) and eastern oysters (Crassostrea virginica) to further understand the effects …

Haunted And Hunted: The Gothic And The Ghostly In The Light And Asylum, Adam Dunnells

Master's Theses

Young adult Gothic horror fiction acts as a coming-of-age story wherein the protagonists must confront the metaphorical and literal ghosts while simultaneously attempting to establish a sense of identity. Applying Gothic theory and ghost theory to the ghostly stories in young adult Gothic horror demonstrates how certain young adult Gothic stories represent the struggle of adolescents as they mature into adulthood and search for their identities. I use Madeline Roux’s Asylum (2013) and D.J. MacHale’s The Light (2010) as case studies to analyze how ghostly antagonists directly oppose adolescent protagonists on their coming-of-age journeys. Analyzing these young adult Gothic horror …

Population Parameter Estimation And Stable Isotope Analysis Of Gulf Sturgeon (Acipenser Oxyrinchus Desotoi) In The Pascagoula River, Alfonso Cohuo

Master's Theses

Gulf Sturgeon (GS), Acipenser oxyrinchus desotoi, are a threatened, anadromous fish species in the northern Gulf of Mexico. Their range is from the Pearl River, LA, in the west to the Suwannee River, FL, in the east with a longitudinal divide at Mobile Bay, AL, creating a western population unit (WPU) and an eastern population unit (EPU). Sturgeon belonging to the WPU exhibit lower abundances, higher mortality rates, and are overall less studied than their EPU counterparts. Notable data gaps for the WPU includes the absence of recent population parameter estimations and confirmed feeding habitat. My thesis aims to …

Assessing The Rates Of Post-Depositional Change Within 2004 Indian Ocean Sediments: Implications For Long-Term Records Of Paleotsunamis, Lillian Pearson

Master's Theses

Foraminifera are commonly used to examine patterns of tsunami inundation occurring over centennial to millennial timescales, but the impacts of post-depositional change on geologic reconstructions are unknown. In Sumatra, the taphonomic character (i.e., test surface condition) of a foraminifer can deteriorate over time, rendering them unidentifiable, and even dissolve them entirely. Here I investigate the rates of post-depositional change of foraminiferal assemblages found within the 2004 Indian Ocean Tsunami (IOT) deposit over a 15-year time interval in Aceh, Indonesia in a vegetated open coastal plain (Site 1: Pulot) and an unvegetated protected coastal cave (Site 2). I identified two zones …

Spatial And Seasonal Patterns Of Above- And Belowground Vegetation Biomass And Potential Drivers In The Pascagoula River Delta, Ms, Evan Grimes

Master's Theses

Coastal wetlands provide a valuable wealth of services to the greater coastal ecosystem and human communities. However, threats such as sea level rise and conservation projects, such as freshwater diversions, have the potential to alter coastal wetlands in different ways. In this thesis, I describe the effects of inundation and nitrogen on vegetation productivity using a field-sampling approach and an in situ controlled mesocosm experiment, called a marsh organ. The West Channel of the Pascagoula River contained significantly higher belowground biomass than the East Channel, which is more anthropogenically modified. Vertical distribution of belowground biomass did not strongly vary between …

Comparison Of Supported Liquid Extraction And Solid Phase Extraction Of Methamphetamine From Urine And Method Validation By Gas Chromatography-Mass Spectrometry, Taylor Hood

Master's Theses

Applications of SLE (supported liquid extraction) is a relatively new extraction technique that is not widely used in forensic toxicology. SLE is also easier and less time consuming than traditional LLE (liquid-liquid extraction) and SPE (Solid phase extraction). This work will compare the extraction efficiencies between SLE and SPE for methamphetamine from urine with detection and quantitation using GC-MS (gas chromatography- mass spectrometry). The SLE cartridges provide better analyte recoveries, eliminate emulsion formation, and allow for shorter processing time than other extraction techniques. The SPE cartridges used have a mixed-mode non-polar/strong cation exchange retention mechanism to extract basic analytes like …

Characterization Of The Bacterial Microbiome Of Exotic Tick Species Collected From Migratory Birds, Raima Sen

Master's Theses

Migratory birds often serve as natural/accidental hosts to ectoparasites like ticks (predominantly immature stages) and are known reservoirs of several pathogens transmitted by ticks. Parasitizing these birds, exotic tick species often hitch rides to non-native ecological niches, bringing along tick-borne pathogens. This study aims to profile the bacteriome of exotic tick species flying in and out of the US from the Neo-tropical South. A total of 421 tick samples comprised of several different tick species were collected off migratory songbirds at sites north of the Gulf of Mexico (Louisiana State). A 16S rRNA metagenomic multiplexed sequencing approach was used to …

Subadult Cortical Bone Analysis As An Indicator Of Childhood Health Status Among The Tipu Maya Population, Jaime Thomas

Master's Theses

This thesis explores juvenile health at the contact Maya site of Tipu in western Belize. The associated cemetery was excavated and provided a large and well-preserved population. Although Tipu has been a focus of many studies, few studies have focused on subadults and none on their cortical development, which can allow insight into access to necessary nutritional resources.

Some 108 femora belonging to individuals aged birth to 13 years with femora previously sectioned at midshaft provided the sample. External dimensions taken included diaphyseal length, circumference, medial-lateral diameter and anterior-posterior diameter. Additionally, cortical thickness was measured at four points, and 95 …

Design, Synthesis, And Characterization Of Glycodendrons Through Small Molecule And Linear Polymer Models, Molly Jones

Master's Theses

This thesis focuses on the design, synthesis, and characterization of glycopolymer-dendron thiol-ene coupling reactions with the long-term goal of increasing biocompatibility of near infrared (NIR) fluorophores for bioimaging applications. A design of experiments was used with small molecule model compounds to determine the parameters for successful thiol-ene click reactions that would lead to success of more complicated amphipathic polymer-polymer coupling reactions. The first chapter provides an introductory overview of the importance and applications of glycopolymers, bioimaging, and Janus dendrimersomes. The second chapter presents the synthetic methods for creating a glucose-functionalized glycopolymer with an acrylamide backbone, the exploration of thiol-ene coupling …

Sedimentology And Shallow Groundwater Responses Of A Coastal Marsh Along A Salinity Gradient: A Case Study In Grand Bay National Estuarine Research Reserve, Mississippi, James Thompson

Master's Theses

Climate change and relative sea level rise is resulting in saltwater intrusion and inundation of coastal marshes. This study investigates factors affecting marsh hydrology, including sediment composition, seasonal variability, and coastal storms in Grand Bay National Estuarine Research Reserve (NERR) near Pascagoula, Mississippi. Analysis of sediment includes color, organic matter, carbonate, magnetic susceptibility, and particle size. Shallow groundwater hydrologic trends between Summer 2015 and Fall 2016 are established along a salinity gradient at four sites using water levels, temperature, and conductivity monitored at the surface and in piezometers at depths of 0.75m, 1.5m, and 2.25m.

Sediment analysis indicates reducing conditions …

Subclinical Atherosclerosis Quantified Through Cumulative Shear Measurement, Margaret Lynne Papka

Master's Theses

With the high mortality rate of cardiovascular disease, it is important to study the early signs. The early detection of cardiovascular disease can lead to saved lives. Currently the most prevalent detection methods are the Framingham Risk Score and the carotid intima media thickness, both of which are insufficient. The necessary tool for early detection requires a uniform quantification system. The stimulus leading to endothelial dysfunction, the most significant predictor of a major adverse cardiovascular event (MACE)—and subsequently subclinical atherosclerosis—is reduced shear stress. Increased surface relative roughness affects the flow profile transition from laminar to turbulent resulting in reduced shear …