Digital Commons Network^™

Clinical And Genomic Characterization Of Recurrent Enterococcal Bloodstream Infection In Patients With Acute Leukemia, Julia A. Messina, Rohita Sinha, Kimberly Starr, Mehreen Arshad, Barbara D. Alexander, Nelson J. Chao, Anthony D. Sung

Department of Food Science and Technology: Faculty Publications

Background. Rates and risk factors for recurrent enterococcal bloodstream infection (R-EBSI) and whether the same genetic lineage causes index EBSI and R-EBSI are unknown in patients with acute leukemia (AL) receiving chemotherapy.

Methods. Ninety-two AL patients with EBSI from 2010 to 2015 were included. Enterococcal bloodstream infection was defined by 31 positive blood cultures for Enterococcus faecium or Enterococcus faecalis and fever, hypotension, or chills. Clearance was defined by 31 negative cultures 324 hours after last positive culture and defervescence. Recurrent enterococcal bloodstream infection was defined by a positive blood culture for Enterococcus 324 hours after clearance. Categorical variables were …

Algal Bloom Expansion Increases Cyanotoxin Risk In Food, Niam M. Abeysiriwardena, Samuel J. L. Gascoigne, Angela Anandappa

Department of Food Science and Technology: Faculty Publications

As advances in global transportation infrastructure make it possible for out of season foods to be available year-round, the need for assessing the risks associated with the food production and expanded distribution are even more important. Risks for foodborne illness are associated with contamination by bacteria, viruses, mold, parasites, natural and synthetic toxins, chemical residues, and conditions that lead to contamination. An increase in the popularity of natural alternatives to pharmaceuticals, herbal remedies and the desire for consuming “super foods” is leading to a change in the dietary patterns of consumers. Similarly, dietary trends are plentiful, with more consumers adopting …

Probiotic Bifidobacterium Strains And Galactooligosaccharides Improve Intestinal Barrier Function In Obese Adults But Show No Synergism When Used Together As Synbiotics, Janina A. Krumbeck, Heather E. Rasmussen, Robert W. Hutkins, Jennifer L. Clarke, Krista Shawron, Ali Keshavarzian, Jens Walter

Department of Food Science and Technology: Faculty Publications

Background: One way to improve both the ecological performance and functionality of probiotic bacteria is by combining them with a prebiotic in the form of a synbiotic. However, the degree to which such synbiotic formulations improve probiotic strain functionality in humans has not been tested systematically. Our goal was to use a randomized, double-blind, placebo-controlled, parallel-arm clinical trial in obese humans to compare the ecological and physiological impact of the prebiotic galactooligosaccharides (GOS) and the probiotic strains Bifidobacterium adolescentis IVS-1 (autochthonous and selected via in vivo selection) and Bifidobacterium lactis BB-12 (commercial probiotic allochthonous to the human gut) when used …

Role Of Whole Grains Versus Fruits And Vegetables In Reducing Subclinical Inflammation And Promoting Gastrointestinal Health In Individuals Affected By Overweight And Obesity: A Randomized Controlled Trial, Julianne C. Kopf, Mallory J. Suhr, Jennifer L. Clarke, Seong-Il Eyun, Jean-Jack M. Riethoven, Amanda E. Ramer-Tait, Devin J. Rose

Department of Food Science and Technology: Faculty Publications

Background: Whole grains (WG) and fruits and vegetables (FV) have been shown to reduce the risk of metabolic disease, possibly via modulation of the gut microbiota. The purpose of this study was to determine the impact of increasing intake of either WG or FV on inflammatory markers and gut microbiota composition.

Methods: A randomized parallel arm feeding trial was completed on forty-nine subjects with overweight or obesity and low intakes of FV and WG. Individuals were randomized into three groups (3 servings/d provided): WG, FV, and a control (refined grains). Stool and blood samples were collected at the beginning of …

The Human Brainome: Network Analysis Identifies Hspa2 As A Novel Alzheimer’S Disease Target, Vladislav A. Petyuk, Rui Chang, Manuel Ramirez-Restrepo, Noam D. Beckmann, Marc Y. R. Henrion, Paul D. Piehowski, Kuixi Zhu, Sven Wang, Jennifer L. Clarke, Matthew J. Huentelman, Fang Xie, Victor Andreev, Anzhelika Engel, Toumy Guettoche, Loida Navarro, Philip De Jager, Julie A. Schneider, Christopher M. Morris, Ian G. Mckeith, Robert H. Perry, Simon Lovestone, Randall L. Woltjer, Thomas G. Beach, Lucia I. Sue, Geidy E. Serrano, Andrew P. Lieberman, Roger L. Albin, Isidre Ferrer, Deborah C. Mash, Christine M. Hulette, John F. Ervin, Eric M. Reiman, John A. Hardy, David A. Bennett, Eric Schadt, Richard D. Smith, Amanda J. Myers

Department of Food Science and Technology: Faculty Publications

Our hypothesis is that changes in gene and protein expression are crucial to the development of late-onset Alzheimer’s disease. Previously we examined how DNA alleles control downstream expression of RNA transcripts and how those relationships are changed in late-onset Alzheimer’s disease. We have now examined how proteins are incorporated into networks in two separate series and evaluated our outputs in two different cell lines. Our pipeline included the following steps: (i) predicting expression quantitative trait loci; (ii) determining differential expression; (iii) analysing networks of transcript and peptide relationships; and (iv) validating effects in two separate cell lines. We performed all …

Reduced Colonic Mucin Degradation In Breastfed Infants Colonized By Bifidobacterium Longum Subsp. Infantis Evc001, Sercan Karav, Giorgio Casaburi, Steven A. Frese

Department of Food Science and Technology: Faculty Publications

Mucin glycoproteins play an important role in protecting the gut epithelium by keeping gut microbes from direct contact with the gut epithelium while allowing for diffusion of small molecules from the lumen to the epithelium. The mucin glycocalyx can be degraded by gut bacteria such as Bacteroides and Akkermansia, but other bacteria, such as Bifidobacterium longum subsp. Infantis, cannot consume mucin glycans. Untargeted mass spectrometry profiles were compared to microbiome profiles to assess how different gut microbiomes affect colonic mucin degradation. Samples obtained from nine infants colonized by Bifidobacterium infantis EVC001 and from 10 infants colonized by higher …

Stability Of The Phenolic Compounds And Antioxidant Capacity Of Five Fruit (Apple, Orange, Grape, Pomelo And Kiwi) Juices During In Vitro-Simulated Gastrointestinal Digestion, Wei Quan, Yadan Tao, Mei Lu, Bo Yuan, Jie Chen, Maomao Zeng, Fang Qin, Fengxian Guo, Zhiyoung He

Department of Food Science and Technology: Faculty Publications

The in vitro digestive stability of phenolic compounds and the antioxidant capacity of five kinds of commonly consumed fruit juices in the daily diet, including apple juice (AJ), orange juice (OJ), grape juice (GJ), pomelo juice (PJ) and kiwifruit juice (KJ), were studied. Following in vitro digestion, the total phenolic (TP) content of fruit juices decreased to different extents by 35%, 25.3%, 23.5%, 22.2% and 7.8% for KJ, OJ, PJ, GJ and AJ, respectively. The individual phenolic content showed similar changes to the TP content, showing reductions of naringenin-trisaccharide in OJ and PJ, epicatechin in GJ, and chlorogenic acid in …

Metabolic Syndrome, Gut Microbiome And Dietary Bioactive Peptides, An Unexplored Triad, Rohita Sinha, Jennifer Clarke, Jean-Jack Riethoven

Department of Food Science and Technology: Faculty Publications

The gut microbiome is a complex, biochemically rich and essential component of the human metabolic system. It has been our understanding for very long that the gut microbes are primarily there to digest the undigested food (mainly fibers), get nourishment, and in return release metabolites helping host cells — short-chain fatty acids produced by gut microbes are a great source of energy for the colonocytes. It is only in the last decade, with advancements of DNA sequencing platforms, that we are lettered about the association between the gut microbial composition and metabolic disorders such as obesity, dysglycemia, dyslipidemia, and cardiovascular …

Commensal Escherichia Coli Strains Can Promote Intestinal Inflammation Via Differential Interleukin-6 Production, Hatem Kittana, Joao Carlos Gomes-Neto, Kari Heck, Abby L. Geis, Rafael R. Segura Munoz, Liz A. Cody, Robert J. Schmaltz, Laure B. Bindels, Rohita Sinha, Jesse M. Hostetter, Andrew K. Benson, Amanda E. Ramer-Tait

Department of Food Science and Technology: Faculty Publications

Escherichia coli is a facultative anaerobic symbiont found widely among mammalian gastrointestinal tracts. Several human studies have reported increased commensal E. coli abundance in the intestine during inflammation; however, host immunological responses toward commensal E. coli during inflammation are not well-defined. Here, we show that colonization of gnotobiotic mice with different genotypes of commensal E. coli isolated from healthy conventional microbiota mice and representing distinct populations of E. coli elicited strain-specific disease phenotypes and immunopathological changes following treatment with the inflammatory stimulus, dextran sulfate sodium (DSS). Production of the inflammatory cytokines GM-CSF, IL-6, and IFN-y was a hallmark of the …

Analysis Of Genetic And Nongenetic Factors Influencing Triglycerides-Lowering Drug Effects Based On Paired Observations, Zheng Xu, Qing Duan, Juan Cui, Yumou Qiu, Qidong Jia, Cong Wu, Jennifer Clarke

Department of Food Science and Technology: Faculty Publications

Obesity is a risk factor for heart disease, stroke, diabetes, high blood pressure, and other chronic diseases. Some drugs, including fenofibrate, are used to treat obesity or excessive weight by lowering the level of specific triglycerides. However, different groups have different drug sensitivities and, consequently, there are differences in drug effects. In this study, we assessed both genetic and nongenetic factors that influence drug responses and stratified patients into groups based on differential drug effect and sensitivity. Our methodology of investigating genetic factors and nongenetic factors is applicable to studying differential effects of other drugs, such as statins, and provides …

Food-Derived Bioactive Peptides In Human Health: Challenges And Opportunities, Subhadeep Chakrabarti, Snigdha Guha, Kaustav Majumder

Department of Food Science and Technology: Faculty Publications

Recent scientific evidence suggests that food proteins not only serve as nutrients, but can also modulate the body’s physiological functions. These physiological functions are primarily regulated by some peptides that are encrypted in the native protein sequences. These bioactive peptides can exert health beneficial properties and thus are considered as a lead compound for the development of nutraceuticals or functional foods. In the past fewdecades, awide range of food-derived bioactive peptide sequences have been identified, with multiple health beneficial activities. However, the commercial application of these bioactive peptides has been delayed because of the absence of appropriate and scalable production …

Investigating Colonization Of The Healthy Adult Gastrointestinal Tract By Fungi, Thomas A. Auchtung, Tatiana Y. Fofanova, Christopher J. Stewart, Andrea K. Nash, Matthew C. Wong, Jonathan R. Gesell, Jennifer M. Auchtung, Nadim J. Ajami, Joseph F. Petrosino

Department of Food Science and Technology: Faculty Publications

A wide diversity of fungi have been detected in the human gastrointestinal (GI) tract with the potential to provide or influence important functions. However, many of the fungi most commonly detected in stool samples are also present in food or the oral cavity. Therefore, to recognize which gut fungi are likely to have a sustained influence on human health, there is a need to separate transient members of the GI tract from true colonizers. To identify colonizing fungi, the eukaryotic rRNA operon’s second internal transcribed spacer (ITS2) was sequenced from the stool, saliva, and food of healthy adults following consumption …

Divergence In Gene Regulation Contributes To Sympatric Speciation Of Shewanella Baltica Strains, Jie Deng, Jennifer M. Auchtung, Konstantinos T. Konstantinidis, Alejandro Caro-Quintero, Ingrid Brettar, Manfred Hofle, James M. Tiedje

Department of Food Science and Technology: Faculty Publications

Niche partitioning and sequence evolution drive genomic and phenotypic divergence, which ultimately leads to bacterial diversification. This study investigated the genomic composition of two Shewanella baltica clades previously identified through multilocus sequencing typing and recovered from the redox transition zone in the central Baltic Sea. Comparative genomic analysis revealed significantly higher interclade than intraclade genomic dissimilarity and that a subset of genes present in clade A were associated with potential adaptation to respiration of sulfur compounds present in the redox transition zone. The transcriptomic divergence between two representative strains of clades A and D, OS185 and OS195, was also characterized …

Metatranscriptome Of Human Faecal Microbial Communities In A Cohort Of Adult Men, Galeb S. Abu-Ali, Raaj S. Mehta, Jason Lloyd-Price, Himel Mallick, Tobyn Branck, Kerry L. Ivey, David A. Drew, Casey Dulong, Eric Rimm, Jacques Izard, Andrew T. Chan, Curtis Huttenhower

Department of Food Science and Technology: Faculty Publications

The gut microbiome is intimately related to human health, but it is not yet known which functional activities are driven by specific microorganisms' ecological configurations or transcription. We report a large-scale investigation of 372 human fecal metatranscriptomes and 929 metagenomes from a subset of 308 men in the Health Professionals Follow-Up Study. We identified a metatranscriptomic 'core' universally transcribed over time and across participants, often by different microorganisms. In contrast to the housekeeping functions enriched in this core, a 'variable' metatranscriptome included specialized pathways that were differentially expressed both across participants and among microorganisms. Finally, longitudinal metagenomic profiles allowed ecological …

Reasoning, Logic, And Development: Essay Review Of The Enigma Of Reason By Hugo Mercier And Dan Sperber, David Moshman

Department of Educational Psychology: Faculty Publications

In 2011, Hugo Mercier and Dan Sperber published an influential article [Mer­cier & Sperber, 2011] arguing that human reasoning evolved for the purpose of argu­mentation and serves that purpose well. Additional publications followed and now, in The Enigma of Reason, Mercier and Sperber [2017] flesh out their theory. Indi­vidual reasoning is often fallacious, in their view, because it applies reasoning beyond the scope of its evolutionary purpose. Logic, rather than a basis for reasoning, is a formalized system developed by logicians that has little connection to actual human reasoning.

This is a rich and readable book that presents many intriguing …

Multifunctional Operational Component For Robotic Devices, Shane M. Farritor, Amy Lehman, Mark Rentschler

Department of Mechanical and Materials Engineering: Faculty Publications

The various embodiments disclosed herein relate to modular medical devices, including various devices with detachable modular components and various devices with pivotally attached modular components. Additional embodiments relate to procedures in which various of the devices are used cooperatively. Certain embodiments of the medical devices are robotic in vivo devices.

Scaffold Structural Microenvironmental Cues To Guide Tissue Regeneration In Bone Tissue Applications, Xuening Chen, Hongyuan Fan, Xiaowei Deng, Lina Wu, Tao Yi, Linxia Gu, Changchun Zhou, Yujiang Fan, Xingdong Zhang

Department of Mechanical and Materials Engineering: Faculty Publications

In the process of bone regeneration, new bone formation is largely affected by physico-chemical cues in the surrounding microenvironment. Tissue cells reside in a complex scaffold physiological microenvironment. The scaffold should provide certain circumstance full of structural cues to enhance multipotent mesenchymal stem cell (MSC) differentiation, osteoblast growth, extracellular matrix (ECM) deposition, and subsequent new bone formation. This article reviewed advances in fabrication technology that enable the creation of biomaterials with well-defined pore structure and surface topography, which can be sensed by host tissue cells (esp., stem cells) and subsequently determine cell fates during differentiation. Three important cues, including scaffold …

Conserving All The Pollinators: Variation In Probability Of Pollen Transport Among Insect Taxa, Diane L. Larson, Jennifer L. Larson, Deborah A. Buhl

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

As concern about declining pollinator populations mounts, it is important to understand the range of insect taxa that provide pollination services. We use pollen transport information acquired over three years in two habitats at Badlands National Park, South Dakota, USA, to compare probabilities of pollen transport among insect taxa and between sexes of bees. Sampling was conducted on 1-ha plots, eight in sparse vegetation (May–October samples; N = 74 surveys) and 12 in wheatgrass prairie vegetation (June–July samples; N = 87 surveys). Insects contacting reproductive parts of flowers were netted, placed individually into tubes charged with ethyl acetate, then transferred …

Ultrastructure Of Meelsvirus: A Nuclear Virus Of Arrow Worms (Phylum Chaetognatha) Producing Giant "Tailed" Virions, George L. Shinn, Brianna L. Bullard

Nebraska Center for Virology: Faculty Publications

Most known giant viruses, i.e., viruses producing giant virions, parasitize amoebae and other unicellular eukaryotes. Although they vary in the level of dependence on host nuclear functions, their virions self-assemble in the host cell's cytoplasm. Here we report the discovery of a new prototype of giant virus infecting epidermal cells of the marine arrow worm Adhesisagitta hispida. Its 1.25 μm-long virions self-assemble and accumulate in the host cell's nucleus. Conventional transmission electron microscopy reveals that the virions have a unique bipartite structure. An ovoid nucleocapsid, situated in a broad "head" end of the virion is surrounded by a thin …

Pushing The Resolution Limit By Correcting The Ewald Sphere Effect In Single-Particle Cryo-Em Reconstructions, Dongjie Zhu, Xiangxi Wang, Qianglin Fang, James L. Van Etten, Michael G. Rossmann, Zihe Rao, Xinzheng Zhang

Department of Plant Pathology: Faculty Publications

The Ewald sphere effect is generally neglected when using the Central Projection Theorem for cryo electron microscopy single-particle reconstructions. This can reduce the resolution of a reconstruction. Here we estimate the attainable resolution and report a “block-based” reconstruction method for extending the resolution limit. We find the Ewald sphere effect limits the resolution of large objects, especially large viruses. After processing two real datasets of large viruses, we show that our procedure can extend the resolution for both datasets and can accommodate the flexibility associated with large protein complexes.

Genome-Wide Analysis Of Genes Encoding Core Components Of The Ubiquitin System In Soybean (Glycine Max) Reveals A Potential Role For Ubiquitination In Host Immunity Against Soybean Cyst Nematode, Chunyu Zhang, Li Song, Mani Kant Choudhary, Bangjun Zhou, Guangchao Sun, Kyle C. Broderick, Loren Giesler, Lirong Zeng

Department of Plant Pathology: Faculty Publications

Background: Ubiquitination is a major post-translational protein modification that regulates essentially all cellular and physiological pathways in eukaryotes. The ubiquitination process typically involves three distinct classes of enzymes, ubiquitin-activating enzyme (E1), ubiquitin-conjugating enzyme (E2) and ubiquitin ligase (E3). To date, a comprehensive identification and analysis of core components comprising of the whole soybean (Glycine max) ubiquitin system (UBS) has not been reported.

Results: We performed a systematic, genome-wide analysis of genes that encode core members of the soybean UBS in this study. A total of 1431 genes were identified with high confidence to encode putative soybean UBS components, …

Tor-Autophagy Branch Signaling Via Imp1 Dictates Plant-Microbe Biotrophic Interface Longevity, Guangchao Sun, Christian Elowsky, Gang Li, Richard Wilson

Department of Plant Pathology: Faculty Publications

Like other intracellular eukaryotic phytopathogens, the devastating rice blast fungus Magnaporthe (Pyricularia) oryzae first infects living host cells by elaborating invasive hyphae (IH) surrounded by a plant-derived membrane. This forms an extended biotrophic interface enclosing an apoplastic compartment into which fungal effectors can be deployed to evade host detection. M. oryzae also forms a focal, plant membrane-rich structure, the biotrophic interfacial complex (BIC), that accumulates cytoplasmic effectors for translocation into host cells. Molecular decision-making processes integrating fungal growth and metabolism in host cells with interface function and dynamics are unknown. Here, we report unanticipated roles for the M. …

Determination Of Vegetative Development And Flower Effect Of Transgenic Nicotiana Tabacum, Hasan Pinar, Aydin Uyun, Semih Yilmaz, Nedim Mutlu, Amitava Mitra

Department of Plant Pathology: Faculty Publications

Species and varieties in the Nicotiana genus may respond differently to photoperiodism in terms of flowering time control. These are classified as short day, neutral day and long day plants. One of these, Nicotiana tabacum cv. The Xanthi nc is a genotype which can flowering on a long day. But the genotype Kanamycin resistance can open its flowers in January when the resistance gene is transferred to the plant. On the other hand, the effect of rootstock to scion in plant species is very important. One of the issues raised is whether the transgenic plant in the rootstock is effect …

Development Of Septic Polysynovitis And Uveitis In Foals Experimentally Infected With Rhodococcus Equi, Laura Huber, Steeve Giguère, Londa J. Berghaus, Amanda Hanafi, Sarah Vitosh-Sillman, Sarah L. Czerwinski

School of Veterinary and Biomedical Sciences: Faculty Publications

Rhodococcus equi is one of the most important causes of disease in foals. Infection is typically characterized by pyogranulomatous pneumonia although extrapulmonary infections occur occasionally. Uveitis and polysynovitis have been reported in foals naturally infected with R. equi and are thought to be the result of an immune-mediated process. However, the pathogenesis of these conditions is poorly understood. The objectives of this study were to document the occurrence of uveitis and polysynovitis after experimental infection with R. equi and to determine if these disorders are the direct result of infection at these sites. Foals between 3 and 4 weeks of …

Circadian Behavioral Responses To Light And Optic Chiasm-Evoked Glutamatergic Epscs In The Suprachiasmatic Nucleus Of Iprgc Conditional Vglut2 Knock-Out Mice, Michael G. Moldavan, Patricia J. Sollars, Michael R. Lasarev, Charles N. Allen, Gary E. Pickard

School of Veterinary and Biomedical Sciences: Faculty Publications

Intrinsically photosensitive retinal ganglion cells (ipRGCs) innervate the hypothalamic suprachiasmatic nucleus (SCN), a circadian oscillator that functions as a biological clock. ipRGCs use vesicular glutamate transporter 2 (vGlut2) to package glutamate into synaptic vesicles and light-evoked resetting of the SCN circadian clock is widely attributed to ipRGC glutamatergic neurotransmission. Pituitary adenylate cyclase-activating polypeptide (PACAP) is also packaged into vesicles in ipRGCs and PACAP may be coreleased with glutamate in the SCN. vGlut2 has been conditionally deleted in ipRGCs in mice [conditional knock-outs (cKOs)] and their aberrant photoentrainment and residual attenuated light responses have been ascribed to ipRGC PACAP release. However, …

“They Don’T Care About You”: First-Year Chinese International Students’ Experiences With Neo-Racism And Othering On A U.S. Campus, Christina W. Yao

Department of Educational Administration: Faculty Publications

This qualitative research study illuminates the experiences affecting first-year Chinese international students in the United States and gives insights as to how these students perceive interpersonal relationships at college. Participants shared reports of neo-racism and othering as negatively affecting their feelings of connection to other members of their collegiate community. Findings and implications from this study indicate a need for better support for first-year Chinese international students in college.

Crop Residue Harvest Impacts Wind Erodibility And Simulated Soil Loss In The Central Great Plains, Yuxin He, Deann R. Presley, John Tatarko, Humberto Blanco-Canqui

Department of Agronomy and Horticulture: Faculty Publications

Crop residue removal can affect the susceptibility to soil wind erosion in climates such as those of the Central Great Plains, United States. Six on-farm trials were conducted in Kansas from 2011 to 2013 to determine the effects of winter wheat (Triticum aestivum L.), corn (Zea mays L.), and grain sorghum (Sorghum bicolor (L.) Moench), residue removal at 0, 25, 50, 75, and 100% of initial height on soil wind erosion parameters. Those parameters include soil surface random roughness (RR), and wind erodible fraction (EF; aggregates -¹ for three hours. Threshold wind velocity required to initiate …

Genetic Diversity And Population Structure Of F3:6 Nebraska Winter Wheat Genotypes Using Genotyping-By-Sequencing, Shamseldeen Eltaher, Ahmed Sallam, Vikas Belamkar, Hamdy A. Emara, Ahmed A. Nower, Khaled F. M. Salem, Jesse Poland, Peter S. Baenziger

Department of Agronomy and Horticulture: Faculty Publications

The availability of information on the genetic diversity and population structure in wheat (Triticum aestivum L.) breeding lines will help wheat breeders to better use their genetic resources and manage genetic variation in their breeding program. The recent advances in sequencing technology provide the opportunity to identify tens or hundreds of thousands of single nucleotide polymorphism (SNPs) in large genome species (e.g., wheat). These SNPs can be utilized for understanding genetic diversity and performing genome wide association studies (GWAS) for complex traits. In this study, the genetic diversity and population structure were investigated in a set of 230 genotypes …

An Efficient And Improved Method For Virus-Induced Gene Silencing In Sorghum, Dharmendra Kumar Singh, Hee-Kyung Lee, Ismail M. Dweikat, Kirankumar S. Mysore

Department of Agronomy and Horticulture: Faculty Publications

Background: Although the draft genome of sorghum is available, the understanding of gene function is limited due to the lack of extensive mutant resources. Virus-induced gene silencing (VIGS) is an alternative to mutant resources to study gene function. This study reports an improved and efficient method for Brome mosaic virus (BMV)-based VIGS in sorghum.

Methods: Sorghum plants were rub-inoculated with sap prepared by grinding 2 g of infected Nicotiana benthamiana leaf in 1 ml 10 mM potassium phosphate buffer (pH 6.8) and 100 mg of carborundum abrasive. The sap was rubbed on two to three top leaves of sorghum. Inoculated …

Irrigation Pumps - Preserving Performance, Derrel L. Martin

Department of Agricultural and Biological Systems Engineering: Presentations and White Papers

This paper describes how pumps must be matched to operating conditions and power units to provide the desired performance and efficiency. We have recently seen installations where one or more components are not properly matched causing higher than necessary pumping costs. Inspection and maintenance of systems and measurement of flow and pressure will go a long way toward monitoring if the proper conditions are being met. This paper also covers types of pumps, pump components, pump curves, impeller speed and trim, pump staging, affinity laws, pump drives, power units, cavitation, and net positive suction head.