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Risk Factors For Postpartum Anestrus In Crossbred Cows In Bangladesh, Md Mostofa Kamal, Md Musharraf Uddin Bhuiyan, Nasreen Parveen, Harry W. Momont, Mohammed Shamsuddin Jan 2014

Risk Factors For Postpartum Anestrus In Crossbred Cows In Bangladesh, Md Mostofa Kamal, Md Musharraf Uddin Bhuiyan, Nasreen Parveen, Harry W. Momont, Mohammed Shamsuddin

Turkish Journal of Veterinary & Animal Sciences

Ultrasonography and a structured questionnaire were used in a cross-sectional study to gather data on the prevalence and risk factors for anestrus in crossbred cows at =>60 days postpartum in 273 smallholder farms. The prevalence of anestrus was 18%. The odds ratio (OR) for true anestrus was 17.52 and 2.81 times higher (P < 0.05) in cows with poor (=3.5) body condition score (BCS), respectively, compared to those with optimal BCS (2.5-3.5), 2.82 times higher in suckled than in nonsuckled cows (P = 0.03), and 2.53 times higher in cows that calved during the cold season than in those that calved during the hot season (P = 0.03). The OR for anestrus was 1.62 times higher (P = 0.017) in cows managed by an employee than in those managed by the farmers themselves (P = 0.001), and 2.66 times higher (P = 0.003) in small farms (=11 cows). The OR was 0.71 to 0.46 times lower in farms having a guaranteed market to sell milk than those with an uncertain traditional milk market (P < 0.05). Maintaining optimal BCS of cows, farmers' training on management of cattle reproduction, and development of a market linkage to sell milk would improve the number of cows for breeding by 60 days postpartum.


A New Approach To Neospora Caninum Infection Epidemiology: Neosporosis In Integrated And Rural Dairy Farms In Turkey, Naci̇ Öcal, Hasan Tarik Atmaca, Meti̇n Koray Albay, Ahmet Deni̇z, Hakan Kalender, Kader Yildiz, Oğuz Kul Jan 2014

A New Approach To Neospora Caninum Infection Epidemiology: Neosporosis In Integrated And Rural Dairy Farms In Turkey, Naci̇ Öcal, Hasan Tarik Atmaca, Meti̇n Koray Albay, Ahmet Deni̇z, Hakan Kalender, Kader Yildiz, Oğuz Kul

Turkish Journal of Veterinary & Animal Sciences

Both cattle and dogs were examined in modern and rural dairy farms that had a history of abortion over 5%. The blood samples were collected from 427 aborted cattle and the sera were tested using a commercial ELISA test kit. Additionally, a necropsy procedure was carried out on the fetuses and calves dead within 2 months after birth; the tissue samples were evaluated by histopathologic, immunoperoxidase, and PCR techniques. Eighteen dogs in close contact with the cattle in the same field were included in the study and blood and feces samples were collected. The feces samples were analyzed by copro-PCR …


Fatty Acid Profile In 4 Types Of Fat Depots In Polish Holstein-Friesian And Limousine × Polish Holstein-Friesian Bulls, Monika Sobczuk-Szul, Zenon Nogalski, Zofia Wielgosz-Groth, Magdalena Mochol, Arkadiusz Rzemieniewski, Paulina Pogorzelska-Przybylek, Cezary Purwin Jan 2014

Fatty Acid Profile In 4 Types Of Fat Depots In Polish Holstein-Friesian And Limousine × Polish Holstein-Friesian Bulls, Monika Sobczuk-Szul, Zenon Nogalski, Zofia Wielgosz-Groth, Magdalena Mochol, Arkadiusz Rzemieniewski, Paulina Pogorzelska-Przybylek, Cezary Purwin

Turkish Journal of Veterinary & Animal Sciences

The aim of this study was to determine the fatty acid profile in 4 types of fat deposits in Polish Holstein-Friesian (PHF) and Limousine × Polish Holstein-Friesian (LM × PHF) bulls. The experimental materials included samples of intramuscular, intermuscular, subcutaneous, and internal fat collected from the carcasses of 28 PHF bulls and 26 LM × PHF bulls. Determined fatty acids (FAs) were divided into saturated (SFAs) and unsaturated (UFAs) FAs, including monounsaturated (MUFAs) and polyunsaturated (PUFAs) FAs. The UFA/SFA, MUFA/SFA, PUFA/SFA, and PUFA n-6/PUFA n-3 ratios were calculated. Internal fat was characterized by the highest SFA concentrations, and subcutaneous fat …


The Effects Of Supplementing Diets Fed To Pregnant And Lactating Ewes With Saccharomyces Cerevisiae Dried Yeast, Katarzyna Zabek, Stanislaw Milewski, Roman Wójcik, Andrzej Krzysztof Siwicki Jan 2014

The Effects Of Supplementing Diets Fed To Pregnant And Lactating Ewes With Saccharomyces Cerevisiae Dried Yeast, Katarzyna Zabek, Stanislaw Milewski, Roman Wójcik, Andrzej Krzysztof Siwicki

Turkish Journal of Veterinary & Animal Sciences

The objective of this study was to determine the effect of supplementing diets fed to ewes (in late pregnancy and during lactation or only during lactation) with Saccharomyces cerevisiae dried brewer’s yeast on the yield and chemical composition of milk and on selected parameters of humoral and cellular immunity. The investigated indicators were analyzed on days 28 and 70 of lactation. The addition of dried yeast contributed to a significant increase in milk yield, and the obtained milk was characterized by a lower somatic cell count, suggesting improved mammary gland health. Diet supplementation had a beneficial influence on the health …


Folate And Homocysteine Metabolisms And Their Roles In The Biochemical Basis Of Neuropsychiatry, Alpaslan Coşar, Osman Meti̇n İpci̇oğlu, Ömer Özcan, Mustafa Gültepe Jan 2014

Folate And Homocysteine Metabolisms And Their Roles In The Biochemical Basis Of Neuropsychiatry, Alpaslan Coşar, Osman Meti̇n İpci̇oğlu, Ömer Özcan, Mustafa Gültepe

Turkish Journal of Medical Sciences

The term 'one-carbon metabolism' is commonly used to describe 3 separate metabolic processes: folate metabolism, the homocysteine remethylation cycle, and the transsulfuration pathway. Folate metabolism concerns the biochemical reactions in which endogenous and exogenous one-carbon units are transferred to tetrahydrofolates. The remethylation cycle is used for the synthesis of methionine from homocysteine with one-carbon units that come from folate. This methionine is then used for the synthesis of S-adenosyl methionine, which is a general donor of methyl groups for many biochemical reactions in the human body. In the transsulfuration pathway, some amino acids and polypeptides, such as cystathionine, cysteine, and …


Indoor Air Quality In Primary Schools In Keçiören, Ankara, Mustafa Alparslan Babayi̇ği̇t, Bi̇lal Bakir, Ömer Faruk Tekbaş, Recai̇ Oğur, Abdullah Kiliç, Serdar Ulus Jan 2014

Indoor Air Quality In Primary Schools In Keçiören, Ankara, Mustafa Alparslan Babayi̇ği̇t, Bi̇lal Bakir, Ömer Faruk Tekbaş, Recai̇ Oğur, Abdullah Kiliç, Serdar Ulus

Turkish Journal of Medical Sciences

To increase the awareness of environmental risk factors by determining the indoor air quality status of primary schools. Materials and methods: Indoor air quality parameters in 172 classrooms of 31 primary schools in Keçiören, Ankara, were examined for the purpose of assessing the levels of air pollutants (CO, CO_2, SO_2, NO_2, and formaldehyde) within primary schools. Results: Schools near heavy traffic had a statistically significant mean average of CO and SO_2 (P < 0.05). The classrooms that had more than 35 students had higher and statistically significant averages of CO_2, SO_2, NO_2, and formaldehyde compared to classrooms that had fewer than 35 students (P < 0.05). Of all classrooms, 29% had 100 CFU/100 mL and higher concentrations of microorganisms, which were not pathogens. Conclusion: Indoor air quality management should continually be maintained in primary schools for the prevention and control of acute and chronic diseases, particularly considering biological and chemical pollution.


Cover And Contents Jan 2014

Cover And Contents

Turkish Journal of Chemistry

No abstract provided.


Synthesis Of Novel Triazoles Bearing 1,2,4-Oxadiazole And Phenylsulfonyl Groups By 1,3-Dipolar Cycloaddition Of Some Organic Azides And Their Biological Activities, Yaşar Dürüst, Hamza Karakuş, Muhsi̇ne Zeynep Yavuz, Ali̇ Akçahan Gepdi̇remen Jan 2014

Synthesis Of Novel Triazoles Bearing 1,2,4-Oxadiazole And Phenylsulfonyl Groups By 1,3-Dipolar Cycloaddition Of Some Organic Azides And Their Biological Activities, Yaşar Dürüst, Hamza Karakuş, Muhsi̇ne Zeynep Yavuz, Ali̇ Akçahan Gepdi̇remen

Turkish Journal of Chemistry

1,3-Dipolar cycloaddition of 5-azidomethyl-3-p-substituted phenyl-1,2,4-oxadiazoles to phenyl vinyl sulfone and bismaleimide gives rise straightforwardly to 1-((3-(p-substituted) phenyl-1,2,4-oxadiazol-5-yl)methyl)-4-(phenylsul\-fonyl)-4,5-dihydro-1H-1,2,3-triazoles and bisdihydropyrrolo[3,4-d][1,2,3]triazole-4,6(3aH,5H)-diones. The structures of the new cycloadducts were elucidated by means of IR, NMR (^1H, ^{13}C, 2D), mass spectra, and physical characteristics (mp and R_f values). In addition, anticancer activities of the cycloadducts against MCF-7 cells were also investigated.


Study On Transportation Of Phenol Through A Nanotubule Membrane, Yue Liu, Li Xie, Xiaoxue Fan, Dingyan Fan, Shasheng Huang Jan 2014

Study On Transportation Of Phenol Through A Nanotubule Membrane, Yue Liu, Li Xie, Xiaoxue Fan, Dingyan Fan, Shasheng Huang

Turkish Journal of Chemistry

Gold nanochannels were prepared by plating electrolessly gold within the pores of polycarbonate filter membranes (PCTMs). These PCTMs with cylindrical Au nanotubules of uniform radius and high density can be used as a convenient model system to investigate the mechanism of particle transport through nanotubules. The transport properties of phenol through a modified Au nanotubule membrane were studied. The permeate flux of phenol transport through the nanotubule membrane can be spatially and temporally manipulated by controlling the magnitude and direction of the current applied across the separation cell, and the electroosmotic flow (EOF) was investigated by measuring the flux of …


Calixcephems: Clustered Cephalosporins Analogous To Calixpenams As Novel Potential Anti-Mrsa Agents, Fazel Nasuhi Pur, Karim Akbari Dilmaghani Jan 2014

Calixcephems: Clustered Cephalosporins Analogous To Calixpenams As Novel Potential Anti-Mrsa Agents, Fazel Nasuhi Pur, Karim Akbari Dilmaghani

Turkish Journal of Chemistry

Two novel clusters of cephalosporin based on calixarene were synthesized directly or by ring expansion of the penicillin arms of calixpenams to the corresponding cephem arms via sulfoxide intermediates. Antibiotic tests showed that calixcephems have a noteworthy increase in antibacterial activity against methicillin-resistant strains of Staphylococcus aureus (MRSA) with respect to parent calixpenams and their corresponding single cephems.


Cover And Contents Jan 2014

Cover And Contents

Turkish Journal of Chemistry

No abstract provided.


Microwave-Assisted Synthesis Of Novel Nonperipherally Substituted Metallophthalocyanines Bearing (7-(Trifluoromethyl)Quinolin-4-Yl)Oxy Groups, Di̇dem Evren, Hacer Yasemi̇n Yeni̇lmez, Ayfer Kalkan Burat Jan 2014

Microwave-Assisted Synthesis Of Novel Nonperipherally Substituted Metallophthalocyanines Bearing (7-(Trifluoromethyl)Quinolin-4-Yl)Oxy Groups, Di̇dem Evren, Hacer Yasemi̇n Yeni̇lmez, Ayfer Kalkan Burat

Turkish Journal of Chemistry

The synthesis, characterization, and spectroscopic properties of novel nonperipherally tetrasubstituted metallophthalocyanines (zinc, cobalt, copper, manganese, and indium) bearing 4 (7-(trifluoromethyl)quinolin-4-yl)oxy units has been reported. The new compounds have been characterized using UV-Vis, IR, ^1H NMR, ^{13}C NMR, ^{19}F NMR, and mass spectroscopic data. The absorption properties of these new complexes were compared to those of peripherally substituted phthalocyanine derivatives. Based on the structural, spectroscopic, and absorption studies, it was found that the substitution effect altered the electronic structures significantly. The results provide useful information to understand the effect of peripheral or nonperipheral substitution on the properties of this macrocyclic ring. …


Speciation Of Chromium By The Combination Of Dispersive Liquid--Liquid Microextraction And Microsample Injection Flame Atomic Absorption Spectrometry, Yunusemre Ünsal, Mustafa Tüzen, Mustafa Soylak Jan 2014

Speciation Of Chromium By The Combination Of Dispersive Liquid--Liquid Microextraction And Microsample Injection Flame Atomic Absorption Spectrometry, Yunusemre Ünsal, Mustafa Tüzen, Mustafa Soylak

Turkish Journal of Chemistry

A microextraction procedure was established for the speciation of total Cr, Cr(III), and Cr(VI). Sudan blue II was used as a ligand for speciation works. Some factors affecting the recoveries of chromium species, including type of extraction and dispersive solvents, pH, ligand amount, extraction time, and matrix ions, were examined. Optimum values for the dispersive liquid--liquid microextraction method were pH 6, LOD 0.34 \mu g L^{-1}, and preconcentration factor 400. Chromium(III) was quantitatively recovered under optimal conditions, while the recovery of chromium(VI) was below 10%. The relative standard deviation for Cr(III) determinations for the 10-replicate measurement of 0.3 \mu g …


Synthesis And X-Ray Powder Diffraction, Electrochemical, And Genotoxic Properties Of A New Azo-Schiff Base And Its Metal Complexes, Mustafa Bal, Gökhan Ceyhan, Bariş Avar, Muhammet Köse, Ahmet Kayraldiz, Mükerrem Kurtoğlu Jan 2014

Synthesis And X-Ray Powder Diffraction, Electrochemical, And Genotoxic Properties Of A New Azo-Schiff Base And Its Metal Complexes, Mustafa Bal, Gökhan Ceyhan, Bariş Avar, Muhammet Köse, Ahmet Kayraldiz, Mükerrem Kurtoğlu

Turkish Journal of Chemistry

A new, substituted 2-[(E)-{[4-(benzyloxy)phenyl]imino} methyl]-4-[(E)-(4-nitrophenyl)diazenyl]phenol azo-azomethine ligand (mbH) was synthesized from 2-hydroxy-5-[(4-nitrophenyl)diazenyl]benzaldehyde and 4-benzyloxyanilinehydrochloride in ethyl alcohol solution. These mononuclear Mn(II), Co(II), Ni(II), Cu(II), and Zn(II) complexes of the ligand were prepared and their structures were proposed by elemental analysis, and infrared and ultraviolet-visible spectroscopy; the proton NMR spectrum of the mbH ligand was also recorded. The azo-azomethine ligand, mbH, behaves as a bidentate ligand coordinating through the nitrogen atom of the azomethine (--CH=N--) and the oxygen atom of the phenolic group. Elemental analyses indicated that the metal:ligand ratio was 1:2 in the metal chelates. Powder X-ray diffraction parameters suggested …


Spectrophotometric Determination Of Molybdenum Using Surfactant-Mediated Liquid--Liquid Extraction, Rameshwar Dass, Jitander Kumar Kapoor, Sunita Gambhir Jan 2014

Spectrophotometric Determination Of Molybdenum Using Surfactant-Mediated Liquid--Liquid Extraction, Rameshwar Dass, Jitander Kumar Kapoor, Sunita Gambhir

Turkish Journal of Chemistry

A new spectrophotometric method has been developed for determination of molybdenum using surfactant-mediated liquid--liquid extraction. Molybdenum(V) obtained by ascorbic acid reduction in 2.5 M H_2SO_4 reacted spontaneously with thiocyanate and cetyl trimethyl ammonium bromide (CTAB), forming an intense orange yellow complex that was extracted quantitatively into 1,2-dichloroethane and absorbed at 460 nm. The absorbance of the extract was found to be stable for more than 24 h. Beer's law was obeyed over the concentration range 0.1--4.2 \mu g Mo mL^{-1} of the extract. The linear range for an accurate determination was found to be 1.2--2.6 \mu g Mo mL^{-1}. The …


An Efficient Synthesis Of Some New Bisbenzimidazoles Via Microwave Technique, Bahi̇tti̇n Kahveci̇, Nesri̇n Karaali̇, Fati̇h Yilmaz, Emre Menteşe Jan 2014

An Efficient Synthesis Of Some New Bisbenzimidazoles Via Microwave Technique, Bahi̇tti̇n Kahveci̇, Nesri̇n Karaali̇, Fati̇h Yilmaz, Emre Menteşe

Turkish Journal of Chemistry

2,2'-[1,4 (1,3)-Phenylenedi(methylene)]bis-1H-benzimidazole derivatives were obtained from the reaction of 1,4- or (1,3)-bisiminoester hydrochloride and o-phenylenediamine derivatives under microwave irradiation. Ester and hydrazide derivatives were prepared from a free NH group. This practical method revealed good results for yield, reaction time, and quick isolation of products.


Novel N-Acyl/Aroyl-2-(5-Phenyl-2h-Tetrazol-2-Yl)Acetohydrazides: Synthesis And Characterization, Aamer Saeed, Majid Hussain, Muhammad Qasim Jan 2014

Novel N-Acyl/Aroyl-2-(5-Phenyl-2h-Tetrazol-2-Yl)Acetohydrazides: Synthesis And Characterization, Aamer Saeed, Majid Hussain, Muhammad Qasim

Turkish Journal of Chemistry

A number of novel N-acyl/aroyl-2-(5-phenyl-2H-tetrazol-2-yl)acetohydrazides (4a--j) of biological interest were efficiently synthesized by treating 2-(5-phenyl-2H-tetrazole-2-yl)acetohydrazide (3) with a variety of aroyl/hetero- cyclyl or alkanoyl chlorides. FTIR, ^1H NMR, ^{13}C NMR, GC-MS, and elemental analyses data confirmed the structures assigned to the newly synthesized compounds.


Synthesis, Spectral Characterisation, Electrochemical, And Fluorescence Studies Of Biologically Active Novel Schiff Base Complexes Derived From E-4-(2-Hydroxy-3-Methoxybenzlideneamino)-N-(Pyrimidin-2-Yl)Benzenesulfonamide, Valarmathy Govindaraj, Subbalakshmi Ramanathan Jan 2014

Synthesis, Spectral Characterisation, Electrochemical, And Fluorescence Studies Of Biologically Active Novel Schiff Base Complexes Derived From E-4-(2-Hydroxy-3-Methoxybenzlideneamino)-N-(Pyrimidin-2-Yl)Benzenesulfonamide, Valarmathy Govindaraj, Subbalakshmi Ramanathan

Turkish Journal of Chemistry

A new Schiff base was prepared from 2-sulphanilamidopyrimidine and 2-hydroxy-3-methoxybenzaldehyde in ethanolic media and it was complexed with Mn(II), Co(II), Ni(II), Cu(II), and Zn(II) ions. The synthesised ligand and complexes were characterised by IR, UV, ^1H and ^{13}C NMR, elemental analysis, cyclic voltammetry, EPR, molar conductance, and magnetic susceptibility. The reasonable shifts in FT-IR and NMR spectral signals of the complexes with respect to the free ligand confirm good coordination of the Schiff-base ligand with the metal through imine nitrogen and oxygen atoms of Schiff base moiety. The Schiff-base ligand and the complexes were screened for antimicrobial activity and fluorescent …


Synthesis And Properties Of Novel Polymeric Metal-Free And Metallophthalocyanines Containing Peripherally Long 1,2-Bis[(3-Oxapropyl)Oxa]Benzene Derivatives, Ahmet Bi̇lgi̇n, Durmuş Yanmaz, Çi̇ğdem Yağci Jan 2014

Synthesis And Properties Of Novel Polymeric Metal-Free And Metallophthalocyanines Containing Peripherally Long 1,2-Bis[(3-Oxapropyl)Oxa]Benzene Derivatives, Ahmet Bi̇lgi̇n, Durmuş Yanmaz, Çi̇ğdem Yağci

Turkish Journal of Chemistry

New polymeric phthalocyanine moieties (M = 2H, Zn, Ni, Cu, and Co) were synthesized via polytetracyclomerization reaction of o-bis[3-(3,4-dicyanophenoxy)propyloxy]benzene (3), which can be obtained by the reaction of 4-nitrophthalonitrile with o-bis[(3-hydroxypropyl)oxy]benzene. Aggregation and disaggregation behavior of the polymeric phthalocyanine (5) was studied with some alkali and earth alkali metal cations. Measured intrinsic viscosities of the polymeric phthalocyanines exhibited a substantial decreasing tendency with dilution of the solution. Thermogravimetric analysis was performed under air by using DSC and DTG/TGA techniques and indicated that these polymers have good thermal stability. AC and DC electrical conductivities of the polymeric phthalocyanines were investigated in …


Does Cyp1a1 Gene Polymorphism Affect Cell Damage Biomarkers And Ageing?, Sima Ataollahi Eshkoor, Patimah Ismail, Sabariah Abd Rahman Jan 2014

Does Cyp1a1 Gene Polymorphism Affect Cell Damage Biomarkers And Ageing?, Sima Ataollahi Eshkoor, Patimah Ismail, Sabariah Abd Rahman

Turkish Journal of Biology

This study aimed to investigate the effects of cytochrome P450 1A1 (CYP1A1) gene polymorphism on early ageing due to occupational exposure to mutagens. The project was conducted on buccal epithelial cells collected from mechanical-workshop workers and controls. Epithelial cells were obtained from the inner part of the cheeks. Techniques including comet assay, micronuclei test, real-time polymerase chain reaction, and restriction fragment length polymorphism-polymerase chain reaction were used to assess DNA damage biomarkers. The results showed that there was a significant difference in relative telomere length (P = 0.039) between wild and mutated genotypes among all individuals. Furthermore, occupational exposure showed …


In Vitro Cytotoxic, Genotoxic, And Oxidative Effects Of Acyclic Sesquiterpene Farnesene, Kübra Çeli̇k, Başak Toğar, Hasan Türkez, Numan Taşpinar Jan 2014

In Vitro Cytotoxic, Genotoxic, And Oxidative Effects Of Acyclic Sesquiterpene Farnesene, Kübra Çeli̇k, Başak Toğar, Hasan Türkez, Numan Taşpinar

Turkish Journal of Biology

Farnesene (FNS) is an acyclic sesquiterpene. It has a wide range of important biological effects such as antioxidant, antimicrobial, and antifungal properties, although its cytotoxic, cytogenetic, and oxidative effects have not been investigated in human blood tissue yet. To this aim, both MTT and lactate dehydrogenase (LDH) assays were carried out to evaluate cell viability and cytotoxicity. Total antioxidant capacity (TAC) and total oxidative stress (TOS) parameters were used to assess oxidative alterations. In addition, micronucleus and chromosomal aberration tests were used for mutagenic and genotoxic studies. The results revealed that FNS reduced cell viability at concentrations of higher than …


Effect Of Nanosized Tio_2 Particles On The Development Of Xenopus Laevis Embryos, Ayşe Bi̇rhanli, Fatma Bi̇lge Emre, Funda Sayilkan, Abbas Güngördü Jan 2014

Effect Of Nanosized Tio_2 Particles On The Development Of Xenopus Laevis Embryos, Ayşe Bi̇rhanli, Fatma Bi̇lge Emre, Funda Sayilkan, Abbas Güngördü

Turkish Journal of Biology

This paper reports the toxic properties of nano-TiO_2 on 2 different early life stages of Xenopus laevis. Synthesis of nano-TiO_2 particles was carried out by the hydrothermal method. Characterization of nanoparticles was performed using spectral techniques including X-ray diffraction, scanning electron microscopy, and a particle-size analyzer. Embryos at the 8th stage and tadpoles at the 46th stage were exposed to 7 concentrations of nano-TiO_2 in the range of 5 to 320 ppm. After 96 h of exposure, the mortality percentage of each exposure concentration was calculated and the activity of enzyme biomarkers acetylcholinesterase, carboxylesterase, glutathione S-transferase, glutathione reductase, lactate dehydrogenase, …


Genome-Wide Identification And Analysis Of Growth Regulating Factor Genes In Brachypodium Distachyon: In Silico Approaches, Ertuğrul Fi̇li̇z, İbrahi̇m Koç, Hüseyi̇n Tombuloğlu Jan 2014

Genome-Wide Identification And Analysis Of Growth Regulating Factor Genes In Brachypodium Distachyon: In Silico Approaches, Ertuğrul Fi̇li̇z, İbrahi̇m Koç, Hüseyi̇n Tombuloğlu

Turkish Journal of Biology

Growth-regulating factor (GRF) genes may play important roles for regulating growth and development in different plant tissues and organs. Here we report the first genome-wide analysis of the GRF gene family in Brachypodium. We performed in silico comparative analysis of GRF genes, including their structure, duplication in the genome, conserved motifs, and phylogenetic relationship. At the end of the study, 10 BdGRF genes were identified. The highest number of GRF genes was identified on chromosome 1 with 5 members, whereas the least number of genes (only 1 member) was found on chromosomes 2, 4, and 5. Of those, a single …


A Preliminary Analysis Of The Gene All0012 Of Anabaena Pcc 7120, Shen Tian, Sili Chen, Fengjiao Gong Jan 2014

A Preliminary Analysis Of The Gene All0012 Of Anabaena Pcc 7120, Shen Tian, Sili Chen, Fengjiao Gong

Turkish Journal of Biology

The genes coding for methyltransferase during the maturation of phycobilisomes in Synechococcus sp. strain PCC 7002 and Synechocystis sp. strain PCC 6803 were indentified and named CpcM. Using bioinformatics methods, it was found that a probable methyltransferase gene denoted all0012, because of its highly similarity, is likely to be the molecule that edits and modifies the \beta-subunit in Anabaena sp. strain PCC 7120. The present study was intended to analyze the probable functions of gene all0012. After bioinformatic analyses, we constructed an appropriate heterologous all0012 expression carrier and the characteristics of expression were evaluated by SDS-PAGE. Afterwards, a deletion mutant …


Investigation Of Potential Virulence Genes And Antibiotic Resistance Characteristics Of Enterococcus Faecalis Isolates From Human Milk And Colostrum Samples, Si̇ne Özmen Toğay, Ayhan Temi̇z, Ayten Çelebi̇, Leyla Açik, Siddi̇ka Songül Yalçin Jan 2014

Investigation Of Potential Virulence Genes And Antibiotic Resistance Characteristics Of Enterococcus Faecalis Isolates From Human Milk And Colostrum Samples, Si̇ne Özmen Toğay, Ayhan Temi̇z, Ayten Çelebi̇, Leyla Açik, Siddi̇ka Songül Yalçin

Turkish Journal of Biology

Enterococci may improve the typical taste and flavor of fermented foods through their proteolytic and lipolytic activities. However, some enterococcal strains are recognized as nosocomial pathogens, which have virulence genes and resistance to certain antibiotics. Enteroccocci are also found in human milk microflora. The aim of this study was to investigate the potential virulence genes and antibiotic resistance characteristics of Enterococcus faecalis isolates from human milk and colostrum samples. In total, 23 Enterococcus faecalis strains were identified from human milk and colostrum samples. Antibiotic-resistant E. faecalis isolates were determined using the disk diffusion method. Vancomycin resistance genes (vanA, vanB) and …


Identification Of An Aflp Marker Linked With Yellow Rust Resistance In Wheat (Triticum Aestivum L.), Handan Balta, Özge Karakaş Meti̇n, Funda Şentürk Akfirat, Fahri̇ye Ertuğrul, Semra Hasançebi̇, Yildiz Aydi̇n, Kadi̇r Akan, Zafer Mert, Müge Türet, Ahu Altinkut Uncuoğlu Jan 2014

Identification Of An Aflp Marker Linked With Yellow Rust Resistance In Wheat (Triticum Aestivum L.), Handan Balta, Özge Karakaş Meti̇n, Funda Şentürk Akfirat, Fahri̇ye Ertuğrul, Semra Hasançebi̇, Yildiz Aydi̇n, Kadi̇r Akan, Zafer Mert, Müge Türet, Ahu Altinkut Uncuoğlu

Turkish Journal of Biology

An important application of molecular markers in plant systems involves improvement in the efficiency of conventional plant breeding by carrying out indirect selection through molecular markers linked to the traits of interest. AFLP analysis was used to identify molecular markers associated with yellow rust resistance in wheat (Triticum aestivum L.) in this study. DNA isolated from the selected yellow rust tolerant and susceptible F_2 individuals derived from a cross between Izgi2001 (resistant) and ES14 (susceptible) at seedling and adult stage was used for bulked segregant analysis combined with AFLP. From the screening of 34 PstI/MseI AFLP primer combinations, the AFLP …


Prothoracicotropic Hormone-Producing Neurosecretory Neurons And Antioxidative Defense In Midgut Of Lymantria Dispar In Trophic Stress, Vesna Peric Mataruga, Milena Vlahovic, Marija Mrdakovic, Dajana Todorovic, Dragana Matic, Anja Gavrilovic, Larisa Ilijin Jan 2014

Prothoracicotropic Hormone-Producing Neurosecretory Neurons And Antioxidative Defense In Midgut Of Lymantria Dispar In Trophic Stress, Vesna Peric Mataruga, Milena Vlahovic, Marija Mrdakovic, Dajana Todorovic, Dragana Matic, Anja Gavrilovic, Larisa Ilijin

Turkish Journal of Biology

As a very invasive insect species, Lymantria dispar is adaptable and sensitive to a changing environment. In insects the neuroendocrine system first reacts to stress by production of prothoracicotropic neurohormones (PTTH) that control ecdysteroid synthesis (morphogenetic and stress hormones). In this article, we report changes in the L2' brain neurosecretory neurons that synthesize PTTH in L. dispar larvae after feeding on locust tree leaves (Robinia pseudoacacia), an unsuitable host plant. Groups of larvae (n = 20 per experimental group) were offered this in comparison with oak leaves (Quercus robur), a suitable control diet, for 3 days after molting into the …


Herbicide-Tolerant Sugarcane (Saccharum Officinarum L.) Plants: An Unconventional Method Of Weed Removal, Idrees Ahmad Nasir, Bushra Tabassum, Zahida Qamar, Muhammad Aslam Javed, Muhammad Tariq, Abdul Munim Farooq, Shahid Javed Butt, Abdul Qayyum, Tayyab Husnain Jan 2014

Herbicide-Tolerant Sugarcane (Saccharum Officinarum L.) Plants: An Unconventional Method Of Weed Removal, Idrees Ahmad Nasir, Bushra Tabassum, Zahida Qamar, Muhammad Aslam Javed, Muhammad Tariq, Abdul Munim Farooq, Shahid Javed Butt, Abdul Qayyum, Tayyab Husnain

Turkish Journal of Biology

Unnecessary weed growth in sugarcane fields forces plants to compete for nutrients and sunlight for survival, which most often leads to significant yield losses. As chemical herbicides cannot differentiate between crop plants and weeds, the development of herbicide-tolerant crops is anticipated. Four sugarcane varieties, CPF-234, CPF-213, HSF-240, and CPF-246, were used to develop glyphosate herbicide tolerance. A glyphosate-tolerant gene of 1368 bp cloned directionally under the 35S promoter with the \Beta-glucuronidase (GUS) reporter gene was used as the transgene. Through the biolistic transformation of sugarcane, calli of all cultivars were transformed with glyphosate-tolerant gene constructs. Efficient regeneration conditions were optimized …


Characterization Of Dehydrin Ahdhn From Mediterranean Saltbush (Atriplex Halimus), Monther Taha Sadder, Abdullah Abdulaziz Al-Doss Jan 2014

Characterization Of Dehydrin Ahdhn From Mediterranean Saltbush (Atriplex Halimus), Monther Taha Sadder, Abdullah Abdulaziz Al-Doss

Turkish Journal of Biology

Dehydrins are a group of proteins whose expression is associated with plant abiotic stresses and seed maturation. The full AhDHN dehydrin gene from Mediterranean saltbush (Atriplex halimus) was cloned and characterized. The AhDHN amino acid sequence revealed 1 S-segment, 3 K-segments (K1, K2, K3), and a transmembrane pore-lining signature. It is a 26.77-kDa protein with a predicted isoelectric point of 6.14. Phylogenetic analysis of the AhDHN protein clustered it with other proteins from related plants belonging to the family Amaranthaceae (Atriplex canescens, Spinacia oleracea, Suaeda salsa, and Suaeda glauca). The AhDHN protein sequence revealed a deletion that was 102 amino …


Enhanced Enzymatic Xylose/Cellulose Fractionation From Alkaline Liquor-Pretreated Corn Cob By Surfactant Addition And Separate Fermentation To Bioethanol, Yefu Chen, Xinxin Zhang, Shijie Zhang, Weijun Qin, Changhui Guo, Xuewu Guo, Dongguang Xiao Jan 2014

Enhanced Enzymatic Xylose/Cellulose Fractionation From Alkaline Liquor-Pretreated Corn Cob By Surfactant Addition And Separate Fermentation To Bioethanol, Yefu Chen, Xinxin Zhang, Shijie Zhang, Weijun Qin, Changhui Guo, Xuewu Guo, Dongguang Xiao

Turkish Journal of Biology

Xylanase xylose/cellulose fractionation can efficiently improve the utilization of xylose and cellulose. Improvement of xylanase performance during hemicellulose hydrolysis can increase xylose/cellulose fractionation efficiency. To utilize xylose and cellulose efficiently, an enzymatic xylose/cellulose fractionation and a separate fermentation bioethanol process were performed. Alkaline liquor-pretreated corn cob was subjected to xylose/cellulose fractionation with xylanase in the presence or absence of the following mixed surfactants: polyoxyethylene(20)-sorbitan-monooleate (0.15% v/v), polyethylene glycol 6000 (0.15% w/v), bovine serum albumin (0.15% w/v), and rhamnolipid (0.005% v/v). The hemicellulose hydrolysis yield (HHY) in the presence of mixed surfactants was 70.5%, which was 66% higher than that of …