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Morpho-Physiological Diversity Of Barley (Hordeum Vulgare L.) Germplasm For Heat Tolerance, Muhammad Ashraf, Fahad Al-Qurainy, Muhammad Sajid Aqeel Ahmad, Muhammad Yasir Iqbal, Adnan Mehmood, Alia Riffat, Ambreen Khadija Alvi

Turkish Journal of Botany

The aim of the present study was to examine the diversity for heat tolerance in a set of 105 accessions using some key morphophysiological attributes. The data was standardized by calculating percent change over control, and used for phonetic analysis and construction of dendograms based on distance matrix (all primary data is given as supplementary material listed in statistical analysis section of Materials and Methods). These distance matrices were then used for the unweighted pair group method with arithmetic mean (UPGMA) cluster analysis using the sequential agglomerative hierarchical nonoverlapping (SAHN) method. The cluster analysis indicated some potential attributes that could …

Paraphlomis Nana (Lamiaceae), A New Species From Chongqing, China, Yaping Chen, Chi Xiong, Houlin Zhou, Feng Chen, Chunlei Xiang

Turkish Journal of Botany

Most species of Paraphlomis are distributed in the south of the Yangtze River in China. In this study, a new species, P. nana, from northeast Chongqing in the north of the Yangtze River is described and illustrated. Bayesian inference and maximum likelihood analyses based on two nuclear ribosomal DNA regions (ITS and ETS) and three plastid DNA markers (rpl32-trnL, rps16, and trnL-trnF) were carried out to explore the phylogenetic position of the new species within Paraphlomis. Though the nuclear and plastid trees reveal incongruent placements of P. nana in Paraphlomis, which may be caused by chloroplast capture, a close relationship …

Tripleurospermum Eskilensis (Asteraceae): A New Halophytic Species From Centralanatolia, Turkey, Mehtap Tekşen, Seher Karaman Erkul, Hayri̇ Duman, Mevlüde Alev Ateş, Mehmet Sağiroğlu

Turkish Journal of Botany

In the present study, a new species of the genus, Tripleurospermum eskilensis (Asteraceae), is described from Central Anatolia, Turkey. The new species has been collected from Eskil region in a restricted area (Aksaray Province). It grows in salty steppe, and is closely related to T. decipiens in terms of morphological characteristics. It has also been morphologically compared with discoid and disciform capitulated species in Turkey. This study includes its detailed description, diagnostic characters, original photographs, geographical distribution, habitat and ecology, conservation status, and identification key. The comparison of Tripleurospermum eskilensis with closely related species was conducted in terms of morphological …

Iron Toxicity-Induced Dna Damage, Dna Methylation Changes, And Ltr Retrotransposon Polymorphisms In Zea Mays, Esra Arslan Yüksel, Murat Aydin, Mahmut Si̇nan Taşpinar, Güleray Ağar

Turkish Journal of Botany

The impact of Fe2+ (iron)toxicity on genomic instability, DNA methylation status, and Long Terminal Repeat Retrotransposons (LTR RTs) polymorphisms on Zea mays is unknown. We investigated the toxicity of Fe2+ using Random Amplified Polymorphic DNA (RAPD), Coupled Restriction Enzyme Digestion-Random Amplification (CRED-RA) and Inter Retrotransposon Amplified Polymorphism (IRAP) assays in Zea mays seedlings, respectively. The results indicated that each dose of FeSO4 (50, 100, 200, and 300 mg/L) had a reducing effect on Genomic Template Stability (GTS) and increasing in RAPD pattern changes (DNA damage). The value of DNA methylation rised gradually depending on FeSO4 doses. Moreover, five LTR RTs …

The Chromosomal Evolution And Analyses Of Turkish Cousinia Species, Tuna Uysal, Osman Tugay, Kuddi̇si̇ Ertuğrul, Meryem Bozkurt, Deni̇z Ulukuş, Hakki Demi̇relma

Turkish Journal of Botany

In this study, Turkish Cousinia species were examined in point of chromosome number and morphology. To our knowledge, this work is the first comprehensive chromosomal study regarding Turkish Cousinia as a whole, especially for endemics. As consistent with previous reports, the chromosome numbers are mostly 2n = 26 and have been determined also as 2n = 24 for only the members of Cynaroideae and Sphaerocephalae sections. An interesting result of this paper is that there is not any polyploid species in this taxonomic group and all of them are diploids. Concerning the chromosome evolution of the Cousinia species, we concluded …

Pollen And Trichome Morphology Of Tribe Stachydeae (Lamiaceae) And Its Phylogenetic Significance, Leila Homami Totmaj, Yasaman Salmaki

Turkish Journal of Botany

Tribe Stachydeae with 12 genera were divided into two major clades: Melitis and Eurystachys clades consisting of all genera attributed to Stachydeae except Melittis. Recently, a broadly defined Eurystachys clade falling into 12 well-supported clades have been formally named in a phylogenetic nomenclature. In the present study, trichomes of 70 spp. from nine genera and pollens of 53 spp. from six genera were investigated using scanning electron microscopy (SEM) in order to draw the taxonomic conclusion of tribe Stachydeae. Trichome characters that can provide adequate variation in delimitation of taxa were: presence or absence of glandular or nonglandular trichomes, number …

Involvement Of Poly(Adp-Ribose)Ylation (Parylation) In The Regulation Of Antioxidant Defense System In Arabidopsis Thaliana Under Salt Stress, Rengi̇n Özgür Uzi̇lday

Turkish Journal of Botany

Posttranslational modifications (PTM) are one of the first responses of plants to environmental stress and involve changing the location and activity of proteins in the cell. Addition of poly(ADP-ribose) (PAR) to proteins, poly(ADP-ribose)ylation (PARylation), is a posttranslational modification resulting from the binding of ADP-ribose from NAD+ to target proteins by PAR polymerases (PARP). PARylation is involved in many physiological events in plants including abiotic and biotic stress response. The aim of this work was to understand involvement of PARylation in inducing enzymatic antioxidant defence and alternative electron sinks in response to salinity. For this purpose A. thaliana plants were treated …

Archaeobotanical Evidence Of Agricultural Products In The Southern Mediterranean Part Of Turkey During The Bronze Ages From Tatarlı Höyük, Sali̇h Kavak, Hali̇l Çakan

Turkish Journal of Botany

In this study, archaeobotanical data were gathered from the Early, Middle, and Late Bronze Age layers (2400-1200 BC) of the Tatarlı Höyük exposed in the 2011?2012 excavation seasons in the Ceyhan district of Adana Province were evaluated. In 8 trenches relating to these periods, archaeological contexts such as inside areas, hearths, ovens, middens, ceramic pots, etc., as well as contexts with carbonized plant remains were recovered by using dry and wet sieving methods, corresponding in total to 90 soil samples. The major agricultural plants identified were Triticum monococcum (einkorn wheat), Triticum dicoccum (emmer wheat), Triticum aestivum (bread wheat), Hordeum vulgare …

Inocybe Viscida (Inocybaceae: Agaricomycetes), A New Species From Mediterranean Forests Of Turkey, Oğuzhan Kaygusuz, Henning Knudsen, Ditte Bandini, İbrahi̇m Türkekul

Turkish Journal of Botany

Inocybe viscida sp. nov., a novel species found in a forest with old trees of Pinus brutia and tertiary relict endemic Liquidambar orientalis in coastal area of southwestern Turkey, is described and illustrated. We present this new species based on morphological and molecular data from nuclear rDNA internal transcribed spacer region (ITS1-5.8SITS2 = ITS) and the portions of nuc 28S rRNA (LSU) gene. Comprehensive description, field photographs, line drawings of the microscopic features and comparisons with phenetically similar taxa and phylogenetically related species are discussed.

Fistulinella Distromatica (Boletaceae, Basidiomycota), A New Bolete From The Atlantic Forest Of Bahia, Brazil, Anderlechi Silva, Ricardo Koroiva, José Bezerra, Felipe Wartchow

Turkish Journal of Botany

Fistulinella distromatica sp. nov. is described based on morphological and molecular data. It is characterized by the following features: pileus surface that is subviscid with appressed, small brownish fribrillose-squamulose; subviscid, minutely subviscid, minutely punctate stipe that is yellow at the base; the relatively large inamyloid spores; hymenial cystidia up to 70 µm long; two-layered stipitipellis with a trichodermal suprastipitipellis and interwoven substipitipellis that is interwoven in a strongly gelatinized matrix. Fistulinella distromatica clusters phylogenetically with a sequence of F. campinaranae var. scrobiculata recorded from Bahia, and in a distinct branch from Colombian Amazon material. Since Bahian specimens are morphologically and …

Molecular Phylogeny And Phylogeography Reveal Recent Divergence In The Iberis Simplex Dc. (Brassicaceae) Species Complex, Emre Çi̇lden, Bariş Özüdoğru

Turkish Journal of Botany

According to the current taxonomic delimitation, the Mediterranean genus Iberis comprises about 30 species. Among them, the taxonomy and species delimitation of Iberis simplex and its morphologically close relatives (I. attica, I. carica, I. gypsicola, I. halophila, and I. spruneri), described here as the I. simplex species complex, are controversial and several different names are used for the members of this complex. Past phylogenetic studies did not include the members of this complex and here we present the first comprehensive phylogenetic and phylogeographic study based on nuclear ITS and chloroplast trnL-F regions to …

Genetic Diversity And Population Structure Analysis For Ampelopsis Grossedentata Using Microsatellite Markers, Xiao Ying Li, L Wei

Turkish Journal of Botany

Ampelopsis grossedentata is an important national medicine in China. It is mainly used commonly by the Yao, Miao, Dong, and other ethnic minorities of China. The current literature, however, contains no study on the molecular genetics and taxonomy of A. grossedentata, which had led to potential problems in the conservation and utilization of this resource. Therefore, the present study was aimed to use simple sequence repeat (SSR) markers for assessing the levels and the distribution of genetic diversity in a sample set of 225 individuals from nine populations of A. grossedentata in China. The genetic differentiation among the nine …

Allelopathic Potential, Nutritional Qualities, And Responses Of Chenopodium Quinoa (Willd.) To Abiotic Stress Conditions-A Review, Sulaiman Shah, Yaseen Khan

Turkish Journal of Botany

Quinoa (Chenopodium quinoa Willd.) is a pseudo cereal crop, which is considered a new alternative crop due to its high nutritional value and tolerance to environmental stresses. Its seeds are rich in proteins and amino acids (e.g., lysine, threonine, and methionine) that are deficient in other pseudo-cereal crops. It also contains essential fatty acids, such as linoleic, and alpha-linolenic acids, and high quantities of vitamins, e.g., riboflavin (B2), and tocopherol (vitamin E), and inorganic nutrients. It has a low glycemic value, is gluten-free, and has high levels of fibre and antioxidants, e.g., alpha- and gamma-tocopherol. In many studies, quinoa …

Detection And Confirmation Of Diagnostic Microsatellite Loci In Populus Nigra And Populus Deltoides To Identify Their Hybrids (P. × Canadensis), Asi̇ye Uluğ

Turkish Journal of Botany

Poplar cultivation has economic, social, ecological, and environmental importance in Turkey. Even though, Populus × canadensis hybrids play an important role for the commercial poplar cultivation with good growth performance and adaptability, hybrid clones introduced the different region of Turkey have started to replace the native stands of Populus nigra gradually. To continue sustainable cultivation of poplar and to conserve the native stands of P. nigra at the same time, genetic identification, and registration of the Populus cultivars from different origins are essential in breeding programs. Genetic identification and characterization of a natural population of P. nigra growing along the …

Botanicals As Prospective Agents Against Sars-Cov-2 Virus, Vyacheslav Dushenkov, Anna Dushenkov

Publications and Research

The COVID-19 high morbidity and mortality resulted in a worldwide healthcare emergency that triggered accelerated and amplified efforts in the relevant areas of health sciences research and practice. Purpose: To assess the potential role of botanicals as therapeutic agents against the SARS-CoV-2 virus. Methods: This narrative review examined the potential role of botanicals as therapeutic agents against the SARS-CoV-2 virus based on the references limited to the English language and published up to February 2022 and retrieved from common academic search engines using multiple keywords and their combinations. The scientific names of plant species were confirmed using World Flora Online …

Characterization Of Salt And Drought Tolerance In Sunflower (Helianthus Annuus L.), Sevgi Saylak

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Consequent to the increasing world population, food sources are needed to be increased to meet the nutritional needs. However, due to natural processes and agricultural activities, the most destructive environmental factors that limit crop production, soil salinity, and drought-exposed areas are growing. As one of the major oilseed crops, sunflower (Helianthus annuus L.), is considered to be moderately tolerant to salt and drought. Although it can grow in arid to semi-arid regions, increasing salinity and drought might adversely affect sunflower production. This study aimed to investigate several sunflower germplasms' morphological responses to salt and drought stresses. For this purpose, …

Potential Of Entomocomposting Toward Soil Pathogen Suppression, Dennis Beesigamukama, María Gómez-Brandón, Chrysantus Mbi Tanga

All Peer-Reviewed Publications

Waste accumulation and microbial pollution are key environmental challenges in most developing countries. Land filling, the commonest waste disposal method, is not sustainable due to land scarcity and point source pollution. Thus, a large fraction of organic wastes is not properly disposed, yet the conventional methods of waste recycling are less effective. The degradation of waste using insect life stages (entomocomposting) has emerged as a novel tool that is fast, affordable, and sustainable in recycling organic wastes with maximum pathogen suppression. This bioconversion process also generates an organic fertilizer with potential to enhance soil remediation and provide additional benefits on …

Impacts Of Nitrogen Rate And Source Following Green Manure On Broccoli Yield, Charlie Rohwer

Midwest Vegetable Trial Reports

Cover crops are beneficial to soil structure and processes and can provide nitrogen (N) to a subsequent crop. Practical studies of N availability from cover crops and organic fertilizers in naive (transitioning) soils are helpful for growers to achieve desirable yield. Microbial soil inoculants (biostimulants) may enhance availability of organic N sources. We found a spring-planted pea-oat cover crop provided less than 27 pounds of N to a subsequent broccoli crop, and no impact of a commercial biostimulant on broccoli yield or development rate. Availability of N from organic amendments used is discussed.

2022 Dsac High Tunnel Bell Pepper Variety Trial, Bronwyn Aly

Midwest Vegetable Trial Reports

This paper reports on seven bell pepper cultivar entries evaluated in a high tunnel production system during the 2022 growing season at the University of Illinois Dixon Springs Agricultural Center (DSAC) located in southern Illinois (Pope County).

Healing Sanctuary, Kammy Downs

Master's Theses or Doctor of Nursing Practice

The natural world has hidden wisdom and resources that are disregarded as we misuse our responsibility to care for them. The benefits of being in tune with nature have been traded for a culture that manipulates nature on the altar of expediency, waste, and unquenchable desire. Healing Sanctuary presents a duality. My work speaks about the relationship between the seen and unseen, represented by ten larger-than-life drawings of medicinal herbal plants that have had a profound physical healing effect on me. At the same time, plants, roots, and seeds create visceral metaphors for mental health. Our accomplishments, outlook on life, …

A Flora Of Coyote Ridge And Flat, Inyo County, California, Martin Purdy

CGU Theses & Dissertations

California’s Sierra Nevada mountain range contains a disproportionate share of the state’s plant diversity and is one of the most floristically diverse regions of its size in the United States. The high Sierra Nevada, in particular, has been identified as an important center of species richness and endemism within California. Anthropogenic climate warming is expected to disproportionately affect mountain ecosystems, and models have predicted serious habitat contraction and extirpation for many alpine plant taxa. A specimen-based inventory of the vascular and non-vascular plants of Coyote Ridge and Flat was conducted to establish baseline data for one such sensitive alpine and …

Plant-Frugivore Interactions Across The Caribbean Islands: Modularity, Invader Complexes And The Importance Of Generalist Species, Maximilian G.R. Vollstädt, Mauro Galetti, Christopher N. Kaiser-Bunbury, Benno I. Simmons, Fernando Gonçalves, Alcides L. Morales-Pérez, Luis Navarro, Fabio L. Tarazona-Tubens, Spencer Schubert, Tomas Carlo, Jackeline Salazar, Michel Faife-Cabrera, Allan Strong, Hannah Madden, Adam Mitchell, Bo Dalsgaard

Biological Sciences Faculty Publications

Aim: Mutualistic interactions between plants and animals are fundamental for the maintenance of natural communities and the ecosystem services they provide. However, particularly in human‐dominated island ecosystems, introduced species may alter mutualistic interactions. Based on an extensive dataset of plant–frugivore interactions, we mapped and analysed a meta‐network across the Caribbean archipelago. Specifically, we searched for subcommunity structure (modularity) and identified the types of species facilitating the integration of introduced species in the Caribbean meta‐network.

Location: Caribbean archipelago (Lucayan archipelago, Greater Antilles, Lesser Antilles).

Methods: We reviewed published scientific literature, unpublished theses and other nonpeer‐reviewed sources to compile an extensive dataset …

Geomorphic Gradients In Shallow Seagrass Carbon Stocks, Jahson Berhane Alemu, Siti Maryam Yaakub, Erik S. Yando, Rachel Yu San Lau, Cheng Chang Lim, Jun Yu Puah, Daniel A. Friess

Biological Sciences Faculty Publications

Seagrass meadows are important sinks of organic carbon (C_org), in particular the near-surface C_org pool (≤ 15 cm) compared to deeper sediments. Near-surface carbon is highly susceptible to disturbance and loss to the atmosphere, however, inadequate accounting for variability in this pool of carbon limits their uptake into carbon accounting frameworks. We therefore investigated the spatial variability in seagrass near-surface C_org and biomass C_org across different geomorphic (estuary, lagoonal and reef-associated) and community typologies (pioneer and persistent). Near-surface C_org stock in vegetated areas (25.78 Mg C_org ha⁻¹ ± 26.64) was twice that …

Biochar: Properties And Potential Benefits For Agricultural Soil In Rwanda, Andromede Uwase

Honors Program: Senior Projects (Public)

Physical and chemical soil degradation is becoming a major challenge for agricultural productivity in Rwanda, which is the most important part of the country’s economy. The wide spreading soil degradation in Rwanda is mainly a result of naturally poor soils coupled with unsustainable soil management leading to, for example, accelerated soil erosion, acidification, nutrient loss, compaction, and to decreasing yields. Biochar, as an end product of pyrolysis of biomass in the absence of oxygen, has been proposed as a soil amendment in remediation strategies because of its positive effects on soil productivity relevant parameters such as soil pH, structure, nutrient …

Targeting Transgenic Proteins To The Mitochondria In Plants, Susan Qudus, Jeffrey P. Mower

Honors Program: Senior Projects (Public)

Cytoplasmic male sterility (CMS) in plants can convert an individual into female through sterilization of the male reproductive parts, creating an inability to produce functional pollen. In nature, this is advantageous for genetic diversity and producing progeny with unique genes that may be beneficial in evolution. For agriculture, this method is preferential for selection of desirable traits in crops when cross breeding. CMS is typically caused by genes in the mitochondrial DNA (mtDNA), such as novel open reading frames (ORFs) that form after imperfect repair of double-stranded breaks in the mtDNA. Specific CMS genes vary among various plant species. It …

Identification And Characterization Of A Long Fruit Mutant In Cucumis Sativus L., Yajing Hu, Xiaojing Dong, Yana Zhang, Rui Tang, Jiali Li, Chenxing Cao, Chunhua Chen, Zhonghai Ren, Lina Wang

Turkish Journal of Botany

A long fruit (lf) mutant was obtained from the cucumber inbred line 'SN5' by ethyl methanesulfonate (EMS)-mediated mutagenesis. We found that plant height and internode length of lf were significantly decreased, while leaf area was significantly increased in comparison to wild type (WT) plants. Higher carbohydrate level, together with lower chlorophyll content and photosynthetic parameters, was revealed in lf leaves than those of WT. Longer fruits, as well as enhanced fruit quality, were observed for mutant plants in comparison to WT, and the difference in fruit length was continuously increased with the development of fruits. ELISA and real-time PCR analyses …

Arundinella Stenostachya (Arundinella, Poaceae), A Reevaluated New Species From Se Asia, Liqiong Jiang, Zhenwen Liu, Ende Liu, Atchara Teerawatananon, Yuehua Wang, Hua Peng

Turkish Journal of Botany

Arundinella stenostachya, a new species, is described and illustrated. It is morphologically similar to A. decempedalis and A. bengalensis, but differs from the former species by the length of panicle branches, type of trichome on nodes and pedicels length, and from the latter in height and diameter of culms, the length and width of leaf blades, pedicels length, and the length of panicles and branches. The new species has been mistakenly identified as A. decempedalis and A. bengalensis. Molecular analyses based on ITS sequences also support A. stenostachya as a distinct species.

Dna Barcoding Analysis And Phylogenetic Relationships Of Indian Wild Coffee Species, Manoj Mishra, Pavankumar Jingade, Arun Kumar C Huded

Turkish Journal of Botany

Wild coffee species are the reservoirs of genetic diversity and could play a critical role in the genetic improvement of coffee. However, the conservation and genetic assessment of wild coffee species has been largely neglected. In the present study, DNA barcoding approaches were employed to assess the phylogenetic relationships between five indigenous wild coffee species from India and compared with two cultivated, and four wild coffee species of African origin. The efficacy of three barcoding loci namely matK,rbcL, and trnL-trnF was investigated using PCR amplification and sequence characterization. The intergenic spacer trnL-trnF is the highly polymorphic loci followed by matK …

Chromosome Numbers And Genome Size Data On Species Of The Genus Petrorhagia(Caryophyllaceae) From Turkey, Kamuran Aktaş, Jaume Pellicer, Teresa Garnatje

Turkish Journal of Botany

Genome size, i.e. the total amount of DNA in an unreplicated somatic nucleus is considered an important character in the biology of organisms, and it is especially relevant for land plants given the extraordinary diversity reported. Despite the continuous growth of data and the efforts aimed at increasing our understanding of plant genome size diversity, more data are needed to have an evenly representation across lineages. With this premise in mind, in this work, we investigated genome size, complemented with chromosome data in eight species of the genus Petrorhagia (Caryophyllaceae) from Turkey. Chromosome counts made indicate that the species studied …

Chemical Fingerprints And Bioactivities Of 12 Anatolian Achillea Species By Lc-Ms/Ms With Chemometric Approach: Novel Phytonutrients, Natural Food Preservatives And Chlorogenic Acid Sources, Mustafa Abdullah Yilmaz, Abdulselam Ertaş, İsmai̇l Yener, Fatma Pinar Türkmenoğlu, Özge Tokul Ölmez, Mehmet Öztürk, Muhammed Altun, Oğuz Çakir, Abbas Tarhan, Mehmet Boğa, İbrahi̇m Demi̇rtaş, Mehmet Hakki Alma, Hamdi̇ Temel

Turkish Journal of Botany

The objective of this study was to evaluate the biological activities and chemical fingerprint profiles of the extracts obtained from twelve Achillea L. species (A. lycaonica, A. biebersteinii (syn: A. arabica), A. kotschyi subsp. kotschyi, A. schischkinii, A. millefolium subsp. millefolium, A. sintenisii, A. setacea, A. teretifolia, A. wilhelmsii subsp. wilhelmsii (syn: A. santolinoides subsp. wilhelmsii), A. nobilis, A. goniocephala, A. spinulifolia). The antioxidant, enzyme inhibitory and cytotoxic effects were evaluated to investigate their bioactivity profiles. Furthermore, the total flavonoid and phenolic contents were determined and LC-MS/MS analysis was performed to reveal the phytochemical profile of the investigated extracts. A. …