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Taxonomy And Phylogeny Of A New Species Of Pseudocercospora On Solanum Nigrum From India, Archana Singh, Sanjay Yadav, Raghvendra Singh, Nawal Dubey

Turkish Journal of Botany

A new species Pseudocercospora solanicola is discovered causing severe leaf spot disease on Solanum nigrum from Sonebhadra. Species is described and illustrated based on morphology, molecular sequence analysis and phylogeny of the large subunit (LSU) and internal transcribed spacer region of the nuclear ribosomal RNA (rRNA) gene. Morphologically, new species has similarity with allied species in Pseudocercospora but differs in having black circular, velvety leaf spot and size of stromata, conidia and conidiophores. A key to Pseudocercospora species on Solanum has been provided.

Lamium Cappadocicum, A New Species From Central Anatolia, Turkey: Evidence From Molecular And Morphological Studies, Ferhat Celep, Fergan Karaer, Bryan T. Drew

Turkish Journal of Botany

Lamium is a taxonomically convoluted genus of about 34 species. Within Lamium, the L. garganicum species complex is particularly challenging. Here, based on morphological and molecular studies, Lamium cappadocicum Celep & Karaer sp. nova (Lamiaceae) is separated from L. garganicum and L. bilgilii and described as a new species, and L. garganicum subsp. rectum (= L. garganicum subsp. pulchrum) is resurrected. The new species is only known from the Hasan Mountain (Aksaray) in Central Anatolia, Turkey. Lamium cappadocicum is closely related to L. garganicum subsp. rectum but differs from it by its mat-forming caespitose habit, reniform (rarely ovate …

Genome-Wide Identification Of Wrky Transcription Factor Encoding Genes In Amborella Trichopoda Baill. (Amborellaceae), Bijaya Pradhan

Electronic Theses and Dissertations

WRKY transcription factors (TFs) are DNA-binding proteins, which play important roles in managing plant stresses and regulating growth and development processes. The WRKY TF family has expanded significantly through genome/gene duplications in the plant evolutionary process. Although the WRKY TFs have been identified in hundreds of plant species, they are yet to be identified in Amborella trichopoda, a species that represents the most basal group of Angiosperms. The main objectives of this study were to conduct genome-wide identification of the WRKY gene family in A. trichopoda and to assess their homologs in Angiosperms. In this study, we identified …

Effects Of Conservation Management Practices On Soil Health And Crop Yields In Eastern South Dakota, Alex Mclain

Electronic Theses and Dissertations

Conservation management practice adoption on agricultural land has increased in recent years due to increasing public and private investment. The anticipated impact of increasing conservation management practice adoption are reduced greenhouse gas emissions and improved soil, water, and air quality. Understanding how these conservation management practices affect agricultural producers economically is vital to properly incentivize these practices. The existing literature on how conservation management practices affect soil health and crop yields is mixed and generally has been conducted on experimental research stations. These studies may not fully account for the on-farm effects of conservation management practices. The objectives of this …

E. Coli Persister Cell Survival And Rhizobia Attachment To Soybean Roots, Tanim Islam

Electronic Theses and Dissertations

The theme of this thesis revolves around how bacteria respond and thrive during stress. Chapters 1-3 are about how bacteria deal with life-threatening antibiotics. Chapter 4 covers new research on how bacteria can move from a stressful individual lifestyle (free-living bacteria) to initiating a symbiotic relationship with a plant (a less stressful lifestyle). In Chapter 1, I briefly summarize the current state of knowledge in the field of antibiotic resistance and persistence. In Chapter 2, I add to this knowledge by providing new insights into several antibiotics' potency and exploring the antibiotic Eagle effect. In Chapter 3, I use pyruvate …

The Role Of Nitric Oxide In Inter- And Intra- Cellular Signaling In Plant Defense, Fan Xia

Theses and Dissertations--Plant Pathology

Plants have evolved a sophisticated immune system to defend themselves against pathogens. This immune response can be triggered in response to pathogen-associated molecular patterns (PAMP) or specialized effectors that are recognized by the plant resistance (R) proteins. The latter, commonly referred to as effector-triggered immunity (ETI), is well known to induce broad-spectrum resistance throughout the plants. This phenomenon known as systemic acquired resistance (SAR) is regulated by several chemical signals including salicylic acid (SA), and free radical nitric oxide (NO) and reactive oxygen species (ROS). These signals operate in two parallel branches with NO/ROS functioning downstream of pipecolic acid (Pip) …

An Examination Of Organic Options In Tomato Systems And Their Use As Alternatives To Copper-Based Products, Erica Ann Fealko

Theses and Dissertations--Plant Pathology

Organic farming is an ever-increasing segment of tomato production. Currently, limited information is available which directly compares conventional to organic treatment programs for disease control in tomato production. Furthermore, many methods available rely on the use of copper products which may be contribute to high Cu levels in agricultural soils. In this study, the efficacies of current conventional and organic methods were compared. In addition, newer disease-control programs, with and without copper were examined, which potentially could reduce over-reliance on copper products.

Standard organic and conventional spray programs were conducted over a four year period targeting two pathogens, Alternaria tomatophila …

Callery Pear Removal Experiment: Trees-Intact (Medlar Conservation Area), Margaret E. Maloney, Eric B. Borth, Grace Dietsch, Mary C. Lloyd, Ryan W. Mcewan

Five Rivers MetroParks Collaboration Data Archive

The invasive tree Callery pear (Pyrus calleryana) is problematic in open habitats in the American Midwest. We investigated the efficacy of various control techniques on P. calleryana invasion in grasslands. Treatments were applied to P. calleryana stems that were single-stemmed trees (around 7 years; n = 40 stems), and response of those stems was measured.

Callery Pear Removal Experiment: Trees-Sprouting (Stillwater Conservation Area), Margaret E. Maloney, Eric B. Borth, Grace Dietsch, Mary C. Lloyd, Ryan W. Mcewan

Five Rivers MetroParks Collaboration Data Archive

The invasive tree Callery pear (Pyrus calleryana) is problematic in open habitats in the American Midwest. We investigated the efficacy of various control techniques on P. calleryana invasion in grasslands. Treatments were applied to P. calleryana stems that had experienced mowing annually for several years and were sprouting (n = 100 stems) and response of those stems was measured.

Geospatial Data Permanent Plot, Grace K. Attea, Ryan W. Mcewan, John L. Vankat

Data Files for Old-Growth Deciduous Forest Dynamics Archive: Hueston Woods

Permanent plot GIS shapefile that measures 100m x 105m and consists of 420 contiguous 5m x 5m subplots. There are 21 transects that run from south to north and 20 subplots per transect that run east to west. This downloadable data is a zipped file containing 8 shapefile building blocks. Geographic Coordinate System: GCS_North_American_1983. Projected Coordinate System: NAD_1983_StatePlane_Ohio_South_FIPS_3402 (meters).

Field Maps 2022, Grace K. Attea, Ryan W. Mcewan, John L. Vankat

Data Files for Old-Growth Deciduous Forest Dynamics Archive: Hueston Woods

Historical field map scans (2022) for the permanent 100m x 105m research plot in Hueston Woods State Nature Preserve.

Geospatial Data Trees 1994, Grace K. Attea, Ryan W. Mcewan, John L. Vankat

Data Files for Old-Growth Deciduous Forest Dynamics Archive: Hueston Woods

Location and demographic data collected for each individual tree in 1994 in Hueston Woods State Nature Preserve. These maps were digitized from the historical field maps to a GIS shapefile for each sampling year. Geographic Coordinate System: GCS_North_American_1983. Projected Coordinate System: NAD_1983_StatePlane_Ohio_South_FIPS_3402 (meters).

Geospatial Data Trees 2000, Grace K. Attea, Ryan W. Mcewan, John L. Vankat

Data Files for Old-Growth Deciduous Forest Dynamics Archive: Hueston Woods

Location and demographic data collected for each individual tree in 2000 in Hueston Woods State Nature Preserve. These maps were digitized from the historical field maps to a GIS shapefile for each sampling year. Geographic Coordinate System: GCS_North_American_1983. Projected Coordinate System: NAD_1983_StatePlane_Ohio_South_FIPS_3402 (meters).

Geospatial Data Trees 2022, Grace K. Attea, Ryan W. Mcewan, John L. Vankat

Data Files for Old-Growth Deciduous Forest Dynamics Archive: Hueston Woods

Location and demographic data collected for each individual tree in 2022 in Hueston Woods State Nature Preserve. These maps were digitized to a GIS shapefile for each sampling year. Geographic Coordinate System: GCS_North_American_1983. Projected Coordinate System: NAD_1983_StatePlane_Ohio_South_FIPS_3402 (meters).

Geospatial Data Trees 1988, Grace K. Attea, Ryan W. Mcewan, John L. Vankat

Data Files for Old-Growth Deciduous Forest Dynamics Archive: Hueston Woods

Location and demographic data collected for each individual tree in 1988 in Hueston Woods State Nature Preserve. These maps were digitized from the historical field maps to a GIS shapefile for each sampling year. Geographic Coordinate System: GCS_North_American_1983. Projected Coordinate System: NAD_1983_StatePlane_Ohio_South_FIPS_3402 (meters).

Effects Of Lemongrass Essential Oil On Galleria Mellonella Hemocytes, Kyndra Chastain

Graduate Theses/Dissertations

In modern agriculture, the use of pesticides is unavoidable. However, improper use has resulted in pest resistance and negative impacts on the environment and human health. Changes are needed in the agricultural industry to account for the damage already caused. Researchers have turned to essential oils as key ingredients for potential biopesticides, with some mixtures already on the market. Most studies involving essential oils and a pest’s response concentrate on mortality or interruptions in development during and between life stages. My study, however, focused on immune responses; specifically, lemongrass essential oil’s impact on Galleria mellonella. Such responses include a …

Largemouth Bass In The Upper Mississippi River: An Evaluation Of Management Strategies And Understanding Potential Factors Influencing Dynamic Rate Functions, Kylie Beth Sterling

Graduate Theses/Dissertations

The Upper Mississippi River (UMR) supports ecologically and economically important commercial and recreational fisheries. One recreational fishery in the UMR is the Largemouth Bass fishery. Recreational fisheries can be effectively managed using information on population dynamics, though little is known about Largemouth Bass population dynamics in large river ecosystems. Therefore, the objectives of this study were to 1) evaluate recruitment, growth, and mortality of three Largemouth Bass populations in the UMR, specifically within Pools 4, 8, and 13, and 2) to use those estimates of recruitment, growth and mortality to inform exploitation models to evaluate best management practices for each …

Garlic Curing: Post-Harvest Nutrient Remobilization From Leaves To Cloves, Mary L. Books

Graduate Theses/Dissertations

Garlic (Allium sativum L.) is grown on small and large scales worldwide. After harvesting, garlic undergoes a drying process for long-term preservation, called curing. Some producers cure with leaves intact, while others will remove and discard the leaves, curing only the bulbs. Due to the ability of plants to remobilize nutrients from leaves to underground storage organs, such as bulbs, the curing method of garlic may affect clove nutrient content. This study explores nutrient remobilization responses in garlic when cured with leaves intact compared to leaves separated from bulbs. Four cultivars of garlic, German White, Chesnok Red, Romanian Red, and …

Analysis Of Root System Architecture And Qtl Identification In Grapevines, Sujan Thapa

Graduate Theses/Dissertations

The root system of the plant plays a vital role in water and nutrient uptake. Native North American grapevines adapted to a broad range of climatic and soil conditions, which led to the evolution of diverse root system architecture (RSA) within the Vitis genus. Despite the importance of RSA in viticulture, little is known about the genetic basis of the RSA in grapevine. I used novel root phenotyping tool, RhizoVision Analyzer to characterize the root system of 208 genotypes of an F₁ grapevine progeny obtained from a cross between Vitis rupestris Scheele B38 and Vitis riparia Michx. HP-1. Dormant …

Environmental Effects On Biomass Allocation And Small Plot Evaluations Of Aquatic Pesticides For Control Of Nitellopsis Obtusa (Starry Stonewort) Collected From Lake Koronis In Stearns County, Minnesota, Patrick J. Carver

All Graduate Theses, Dissertations, and Other Capstone Projects

Phenology is the study of critical life stages in plants in relation to shifts in environmental factors during seasonal changes. Starry stonewort is a green macro alga in the family Characeae native to Eurasia. Much of the Midwestern United States has been invaded by this species. Starry stonewort has been seen to have late season growth patterns in its invaded range. This study found that this growth pattern was dependent upon water temperature and light transmittance both of which affect biomass production and senescence. It was hypothesized that peak biomass would occur in the late summer (August), however we observed …

A New Achillea (Asteraceae) Species From Southwestern Turkey, Gürkan Semi̇z, Tuna Uysal, Meryem Bozkurt, Batikan Günal

Turkish Journal of Botany

Achillea alimeana Semiz & Uysal sp. nov. of sect. Santolinoidea DC. (Asteraceae), was described, diagnosed and illustrated as a new species. It was collected from Akdağ Mountains in Denizli Province. In this paper, the diagnostic characters of A. alimeana and its similar species were discussed in the morphological, palynological and molecular findings. As regards the new species, some notes on the ecology, conservation status, and distribution were submitted. A diagnostic key was given for related taxa.

Evaluating Fungicide Timing, Efficacy, And Sensitivity As Well As Candidate Resistance Genes Against Fungi Causing Phomopsis Stem Canker In Sunflower, Ruchika Kashyap

Electronic Theses and Dissertations

Phomopsis stem canker is one of the major diseases of sunflower (Helianthus annuus L.) caused by complex of Diaporthe spp., in the U.S. This disease became of economic importance after 2010 epidemic in Minnesota, North Dakota, and South Dakota and since then the prevalence of this diseases has increased due to increased average precipitation in these major sunflower growing regions of the U.S. The two important disease management strategies involve the use of fungicides and partially resistant hybrids. However, over the years, researchers and growers have seen varied results on Phomopsis stem canker disease severity reduction and yield gains, when …

Design Of Affordable Polyaniline - Based Wearable Sensor For Real Time Plant Growth Monitoring, Temitope Borode

Electronic Theses and Dissertations

The need for precision agriculture in today and future farming cannot be overstressed. Recent agriculture is characterized by numerous challenges such as environmental stressors and resource constraints resulting in low crop yield and unsustainable agriculture practices. Understanding plant growth mechanism and growth rate under the external influence is a bedrock towards precision agriculture practices ensuring optimum yield and sustainable utilization of resources. The current study addresses this need by developing and applying an affordable and stable sensor for monitoring plant growth. The sensor was fabricated by in-situ chemical polymerization of aniline on an elastic band substrate by dip coating. The …

Development Of Genomic Resources In Vitis Riparia For Discoveries On Pre- And Post-Transcriptional Molecular Regulators Of Early Induction Into Endodormancy, Michael Robben

Electronic Theses and Dissertations

Grapevine is one of the most important fruit crops in the world, responsible for billions in global sales annually. The largest threat to grapevine and other crop production is global climate change resulting human activities. This brings unpredictable and drastic changes in ambient air temperatures to many climates in which grapes are grown. Lower temperatures and inclement weather are already responsible for millions in lost revenue due to tissue damage of established plants. Thus, protecting grapevine crops from weather-related damage is the biggest concern to growers aside from pathogen- and diseaserelated crop damage. The primary mechanism for winter survival in …

Exploring Bioprocessing Technologies For Diverse Industrial Application Of Canola, Ahmad Fawzi N Alhomodi

Electronic Theses and Dissertations

Globally, canola is the second largest oilseed crop after soybean, which is processed for the commercial production of high value oil. The industrial processing steps for canola oil extraction include preprocessing (cleaning, pressing, flaking, and cooking), mechanical pressing, and/or organic solvents. This process results in large quantities of protein-rich (~ 40% dry basis) meal as a co-product. The meal is used partially in animal diet (<30% inclusion) due to high levels of antinutritional factors (ANFs) such as high fibers, phytic acid, and glucosinolates, and low metabolizable energy. Thus, this research was designed to examine various bioprocessing technologies (i.e., traditional sprouting, solid state fermentation, submerged state fermentation, co-culture fermentation, mild pretreatments, and their combinations) for possible advancement in canola use. Canola seed sprouting for 6-day period led to an increase in protein content and a reduction in ANFs and oil content of sprouts compared to ungerminated seed. Subsequent submerged state fermentation of 6- day old sprouts using three different strains (Aureobasidium pullulans, Trichoderma reesei and Neurospora crassa) further increased protein content and lowered ANFs. Solid-state fermentation of 144 h old sprouts using A. pullulans, N. crassa and T. reesei enhanced the protein content and reduced ANFs of sprouts. Sprouting canola seed for three days helped in hull removal, leading to high protein meal accompanied by low fiber and phytic acid level. Three-day seed sprouting had no effect on oil yield, but free fatty acid content was higher compared to seed oil. Co-culture fermentation of HECM under solid state process showed maximum reduction in fiber content with co-culture of A. pullulans and N. crassa while a combination of A. pullulans and T. reesei promoted the highest GLS and phytic acid reductions compared to other combinations, which indicated the advantage of coculture inoculation over monoculture in terms of ANFs reduction. Mild pretreatment of HECM using deionized water resulted in washed HECM (WHECM) with lower soluble sugars and GLS compared to untreated HECM, whereas protein and amino acid were concentrated due to the removal of soluble components. WHECM compared to HECM showed higher protein digestibility when fed to rainbow trout. Subsequent mono- and coculture fermentation of HECM and WHECM under submerged process resulted in higher protein and amino acid content and lower ANFs levels compared to uninoculated controls. The results of cellulase, endoglucanase and β-glucosidase activity indicated the crucial role of used substrates, fungi, fermentation modes (solid state/submerged stated) and inoculation methods (mono-/co-culture) on enzyme activities.

Assessment Of Genetic Variation Of Natural Populations Of Wild Cherry (Prunus Avium L.)Via Ssr Markers, Burcu Uzan Eken, Emrah Kirdök, Ercan Veli̇oğlu, Yelda Özden Çi̇ftçi̇

Turkish Journal of Botany

Wild cherry (Prunus avium L, syn. Cerasus avium L. Moench.) is a widely spread forest tree that has ecological and economical importance. However, the genetic diversity of this species is threatened for many reasons. Therefore, a breeding and conservation program should be established in order to minimise the loss of genetic diversity. In this study, we aimed to understand the genetic structure of 440 individual wild cherries sampled from 22 different populations in Turkey using 10 SSR molecular markers. With the molecular variance analysis, we found that the genetic diversity within the population is approximately 88.5% and the genetic diversity …

Mining And Analysis Of Chloroplast Simple Sequence Repeats (Ssrs) From Eight Species Of Aquilaria, Muhammad Syahmi Hishamuddin, Ahmad Syazwan Samsuddin, Rozi Mohamed

Turkish Journal of Botany

Aquilaria is a tropical forest tree, producer of the famed and expensive agarwood. Aggressive collection of agarwood put strain on the natural stands of Aquilaria species, sparking efforts to domesticate the tree and cultivate agarwood in plantations. However, tree domestication progress is hampered by the scarcity of genomic resources that is crucial for breeding programs. In this study, the complete chloroplast (cp) genome sequences from eight Aquilaria species were analyzed in silico. For identification of the simple sequence repeats (SSRs), MISA PERL script which had a repeat length of 12 for mononucleotides (mono-), 6 for dinucleotides (di-), 4 for trinucleotides …

Karyomorphology, Ploidy Analysis, And Flow Cytometric Genome Size Estimation Of Medicago Monantha Populations, Homa Zarabizadeh, Ghasem Karimzadeh, Sajad Rashidi Monfared, Saeed Tarkesh Esfahani

Turkish Journal of Botany

Karayomorphological analysis and monoploid genome size (2Cx DNA) of 12 Iranian Medicago monantha populations are reported. Flow cytometric analysis were conducted on freshly collected seeds, using Solanum lycopersicum cv. Stupicke (2C DNA = 1.96 pg), as the internal reference standard. All populations were diploid with variable degrees of mixoploidy and two different chromosome numbers within each population. Totally, six chromosome numbers of 22, 28, 30, 32, 36, and 40 were identified. Twotyped chromosomes ("m", "sm") with a mean length of 1.65 µm (0.98-2.99 ?m) formed seven different karyotype formulas. Karyotypes were mostly symmetrical, implying the evolutionary effect of natural and …

Current Nomenclature And Systematics Of Capsella Medik. With Lectotypifications:Towards Solving The Puzzle, Yelda Güzel

Turkish Journal of Botany

The taxonomic history of Capsella Medik., one of the genera with the highest phenotypic plasticity, and thus the highest synonym number relative to the recognized species number, was reviewed. The current systematics of the genus was discussed and the exact number of taxa was determined. In light of the molecular and nomenclatural data, it was decided that the genus was represented around the world by five species and one hybrid. Considering the molecular studies that have been conducted over the 30 years it was concluded that the species of this genus are typical examples of the concept of cryptic species. …

Dianthus Berkayii (Caryophyllaceae), A New Species From Turkey, Zeki̇ Aytaç, Ali̇ Kandemi̇r, Tuğba Ertuğrul, Ahter Fi̇şne, Mevlüde Alev Ateş

Turkish Journal of Botany

Dianthus berkayii belongs to sect. Fimbriati was described and illustrated as a new species from Erzincan Province in Eastern Anatolia, Turkey. In the current study morphological, palynological, and molecular characters were compared and discussed with its closely related species. The new species is similar to D. crinitus with fimbriate corolla, linear, acuminate, ± rigid leaves. Also similar to D. vanensis with fimbriate corolla, linear, acuminate, ± rigid, curved divaricate leaves. But distinctly different from D. crinitus by having linear and curved divaricate leaves, stem with 3?4(?5) internodes (not 5?8), a style much longer than petals, and different from D. vanensis …