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A New Scrophularia (Scrophulariaceae) Species Without Staminodes In The Enigmatic ?Canina Clade? From The Western Taurus (Türkiye), Candan Aykurt, Mertcan Gülben, Bariş Özüdoğru, Duygu Sari, İsmai̇l Gökhan Deni̇z, Burçi̇n Çingay

Turkish Journal of Botany

The new species of Scrophularia was discovered among the screes and stony slopes of the Alakır Valley (Antalya) located in the Western Taurus. The most remarkable morphological feature of the species is its flowers without staminodes. With this feature, the species is unique among the representatives of the ?Canina? clade in Türkiye. The new species is closely related to S. floribunda endemic to Türkiye and East Aegean Islands (Greece) according to our phylogenetic analyses based on the nuclear ITS and chloroplast trnL-F regions. Apart from its corollas without staminodes, the new species differs from its morphologically similar …

Nuclear Dna Content And Ploidy Levels Of Living Apple Germplasm Collection In Türkiye, Emel Kaçal, Yaren İpek Şi̇mşek, Turgay Seymen, Şeri̇f Özongun, Meti̇n Tuna

Turkish Journal of Botany

One of the key uses of flow cytometry is the estimation of nuclear DNA content and ploidy level, which has proven a reliable and effective approach in many studies. The primary goal of this research is to estimate the nuclear DNA content and ploidy level of the apple genetic resource collection maintained in the Fruit Research Institute?s living Malus collection for the first time using flow cytometry (for autochthonous varieties). Fresh apple leaf tissues were used for the flow cytometry analysis. For each genotype, nuclear DNA analysis was performed on three individual plants. Propidium iodide (PI) is used as a …

Increasing Temperatures Can Pose An Opportunity To Recover Endemic And Endangered Oriental Sweetgum Tree (Liquidambar Orientalis Mill.) From Extinction, Okan Ürker, Nurbahar Usta Baykal, Eren Ada

Turkish Journal of Botany

Evidence suggests that past climatic oscillations caused many species to drastically change their distribution range and had significant impacts on their survival capabilities. There is significant evidence suggesting that today's changing climate threatens many species to face a rapid extinction period in the coming decades and centuries. Understanding the changing range patterns provides significant input on biodiversity and conservation biology studies. However, warming climatic conditions may also present an opportunity for some species to expand their habitats?particularly those adapted to warmer environments. In this study, we asked how near-future climate change will affect the distribution range of the oriental sweetgum …

Evaluation Of Phytochemicals And The Role Of Oxidative Stress Pathways During Fruit Development In Strawberries (Fragaria×Ananassa), Fahimeh Mokhtari Shojaee, Elham Mohajel Kazemi, Houshang Nosrati, Maryam Kolahi, Mehdi Haghi

Turkish Journal of Botany

Strawberries (Fragaria × ananassa) are one of the Rosaceae family, considered economically and nutritionally important berry fruits. Phytochemicals are crucial ingredients that contribute to characteristics such as the fruit?s aroma and flavor. The current study investigated the phytochemical characteristics of strawberry fruit at three developmental stages (green, white, and red). HPLC measurements determined the glucose, fructose, and sucrose concentrations significantly increased in the red fruit, whereas glucose was identified as the major sugar in ripe fruit (2.8 g.g-1FW). Evaluation of the phenylpropanoid pathway implied that the amount of total phenol and flavonoid following phenylalanine ammonia-lyase enzyme activity decreased …

Overcoming Genetic Paucity Of Camelina Sativa: Possibilities For Interspecific Hybridization Conditioned By The Genus Evolution Pathway, Rostyslav Y. Blume, Ruslan Kalendar, Liang Guo, Edgar B. Cahoon, Yaroslav B. Blume

Center for Plant Science Innovation: Faculty Publications

Camelina or false flax (Camelina sativa) is an emerging oilseed crop and a feedstock for biofuel production. This species is believed to originate from Western Asian and Eastern European regions, where the center of diversity of the Camelina genus is located. Cultivated Camelina species arose via a series of polyploidization events, serving as bottlenecks narrowing genetic diversity of the species. The genetic paucity of C. sativa is foreseen as the most crucial limitation for successful breeding and improvement of this crop. A potential solution to this challenge could be gene introgression from Camelina wild species or from …

A Facile Agrobacterium‑Mediated Transformation Method For The Model Unicellular Green Algae Chlamydomonas Reinhardtii, Truyen N. Quach, Shirley J. Sato, Mark R. Behrens, Paul N. Black, Concetta C. Dirusso, Heriberto D. Cerutti, Tom Elmo Clemente

Center for Plant Science Innovation: Faculty Publications

A reliable and simple Agrobacterium-mediated transformation system for the unicellular green algae model organism Chlamydomonas reinhardtii has been developed. The protocol has been successfully employed with both neomycin phosphotransferase II (nptII) and the phleomycin resistance (bleI) genes coupled with the selective agents paromomycin and zeocin, respectively. A set of binary vectors were assembled that carry the selectable marker cassettes under control either of the Rbcs2 alone or fused to the HSP270A leader sequence, PsaD, or ß-tubulin2 promoters. The corresponding T-DNA elements also harbored a cassette with a codon-optimized version of yellow fluorescence protein (YFP) under …

Genetic Improvement Of Tocotrienol Content Enhances The Oxidative Stability Of Canola Oil, Min Deng, Hao Chen, Wei Zhang, Edgar B. Cahoon, Yongming Zhou, Chunyu Zhang

Center for Plant Science Innovation: Faculty Publications

Background: Tocotrienols and tocopherols, which are synthesized in plastids of plant cells with similar functionalities, comprise vitamin E to serve as a potent lipid-soluble antioxidant in plants. The synthesis of tocopherols involves the condensation of homogentisic acid (HGA) and phytyl diphosphate (PDP) under the catalysis of homogentisate phytyltransferase (HPT). Tocotrienol synthesis is initiated by the condensation of HGA and geranylgeranyl diphosphate (GGDP) mediated by homogentisate geranylgeranyl transferase (HGGT). As one of the most important oil crops, canola seed is regarded as an ideal plant to efficiently improve the production of vitamin E tocochromanols through genetic engineering approaches. However, only …

Lichens Of Iller Creek: A Checklist For The Iller Creek Unit, A Division Of Dishman Hills Conservation Area, Spokane Valley, Wa, Devin M. Mumey, Giovanna Bishop, Jessica L. Allen

2023 Symposium

The field of biodiversity documentation encompasses a broad range of research including new species discovery and description, compilation of species present in a given area, and investigation of interspecies interaction. In an era of increasingly devastating and rapid environmental change, documenting biodiversity has become increasingly important. Anthropogenic effects on urban-adjacent natural areas are especially significant, as they can cause numerous, often drastic, responses in ecosystems. Our objective here was to document the lichen biodiversity in a large urban-adjacent protected area: the Iller Creek Unit of the Dishman Hills Conservation Area in Spokane Valley, Washington. This unit encompasses a diversity of …

Developing Cryopreservation Methods Of Wheat Roots, Ramanpreet Singh, Nguyen Khoi Nguyen, Taylor S. Matteucci

2023 Symposium

In the midst of record breaking rates of plant species extinction due to climate change and fungal diseases, a universal cryopreservation method would provide a means for preservation of these many different species. The concept of plant root cryopreservation first emerged in the late 1960’s, and with it came new avenues of preserving tissue for the purposes of agriculture and research. Frozen tissues can be transported and stored more reliably than other more conventional means. When thawed, they have the potential to be cultured and grown. Several different methods of cryopreservation exist. This experiment used the Fast (3°C/minute) and Slow …

An Improved Digestion And Analysis Procedure For Silicon In Plant Tissue, Noah James Langenfeld, Bruce Bugbee

Plants, Soils, and Climate Faculty Publications

Silicon (Si) in plant tissues reduces abiotic and biotic stress, but it is incorporated as silica (SiO₂), which is difficult to solubilize for analysis. We modified an oven-induced tissue-digestion and analysis method to improve Si solubilization and validated its accuracy by quantifying the mass-balance recovery of Si from the hydroponic solution and plant tissues of cucumber (Cucumis sativus). Leaf, stem, and root tissues were dried, finely-ground, and digested in 12.5 molar sodium hydroxide at 95°C for 4 hours. Solutions were then acidified with 6 molar hydrochloric acid to achieve a pH below 2 for measurement of …

Is Climate Change Causing The Range Contraction Of Cape Rock-Jumpers (Chaetops Frenatus)?, Gregory D. Duckworth, Raquel A. Garcia, Rheinhardt Scholtz, Res Altwegg

Department of Agronomy and Horticulture: Faculty Publications

Species distribution models often suggest strong links between climate and species' distribution boundaries and project large distribution shifts in response to climate change. However, attributing distribution shifts to climate change requires more than correlative models. One idea is to examine correlates of the processes that cause distribution shifts, namely colonization and local extinction, by using dynamic occupancy models. The Cape Rock-jumper (Chaetops frenatus) has disappeared over most of its distribution where temperatures are the highest. We used dynamic occupancy models to analyse Cape Rock-jumper distribution with respect to climate (mean temperature and precipitation over the warmest annual quarter), …

Herbicide And Additive Impacts On Bradyrhizobium Japonicum Growth In Solution, Joy Amajioyi, Thandiwe Nleya, Senthil Subramanian, Sharon A. Clay

Agronomy, Horticulture and Plant Science Faculty Publications

Plant biostimulants include beneficial fungi and bacteria, and are often applied to foliage to improve crop growth, yield, and/or crop quality. Crop improvements due to biostimulant addition may be modest; therefore, solo applications may not be economical or climate smart. However, biostimulants combined with other postemergence treatments, such as herbicides, may provide an alternative application method, if mixtures do not harm the living organism(s). The growth of Bradyrhizobium japonicum, as a biostimulant surrogate, was assessed in solutions of glyphosate [N-(phosphonomethyl)glycine] and dicamba (3,6-dichloro-2-methoxybenzoic acid), with and without common spray additives (ammonium sulfate [AMS] and nonionic surfactant) in laboratory studies over …

Is The Nucleus The Unwitting Architect Of Asymmetric Cell Division In Plants?, Janlo M. Robil

Biology Faculty Publications

No abstract provided.

Disease-Reducing Effect Of Calcium Salts Against Postharvest Diseases Of Mango (Mangifera Indica L. Cv. Carabao) Fruits, Melissa P. Montecalvo, Mary Joy C. Mendoza, Teresita U. Dalisay

The Philippine Agricultural Scientist

Mango fruits (Mangifera indica L. cv. Carabao) are susceptible to fungal infection, resulting in postharvest diseases. Chemical pesticides are used for disease management but may have a health impact and are costly. Therefore, alternatives to chemical control are necessary to minimize health risks and losses due to postharvest diseases. This research presented the disease-reducing effect of calcium salts, calcium chloride (CaCl₂) and calcium carbonate (CaCO₃), against mango stem end rot (SER) (sometimes caused by Lasiodiplodia theobromae) and anthracnose (caused by Colletotrichum gloeosporioides sensu lato). In in vitro assays, mycelial growth of both pathogens …

Effects Of Polishing And Cooking On The Phytochemical Properties And Antioxidant Activities Of Selected Philippine Rice Cultivars [Research Note], Rodel M. Bulatao, Charleo S. Zapanta, Maricar B. Castillo, Reniel P. Tubera, Joel R. Salazar

The Philippine Agricultural Scientist

This paper evaluated the effects of different polishing times and regular cooking on the phytochemical properties and antioxidant activities of black rice Brillante, red rice Minaangan, and white rice NSIC Rc 160. Rice samples were polished for 0, 15, 30, and 45 s, and were cooked using their optimum cooking water ratio. The samples were then characterized for their phytochemical properties [total anthocyanin content (TAC), total phenolic content (TPC), and total flavonoid content (TFC)] and antioxidant activities [DPPH-radical scavenging activity (DPPH-RSA) and ferric reducing antioxidant power (FRAP)]. Pearson’s correlation analysis (PCA) was employed to determine the strength of …

Allelopathy Of Faba Bean Cover Crop To Durum Wheat Under A Semi-Arid Environment, Oussama Oueslati, Arwa Zammali, Raed Hamdi, Ahlem Dhahri, Chaima Melliti, Moncef Ben Hammouda, Robert Kremer

The Philippine Agricultural Scientist

Problems facing farmers practicing conservation agriculture in the semi-arid zone of Tunisia include appropriate cover crop selection, management of allelopathic effects affecting subsequent crop performance, and influence of seasonal variation on allelopathy expression. Allelopathy expressed by faba bean (Vicia faba L.) toward durum wheat [Triticum turgidum ssp. durum (Desf.) Husn.] was studied using bioassays during three growing seasons. The role of phenols in the expression of such potential was also investigated. Analyses of plant samples at three phenological stages (flowering, fruiting, senescence) revealed that leaves were most inhibitory. Allelopathic potential differed among plant components and phenological stages, with …

Effects Of Measurement Methods And Growing Conditions On Phenotypic Expression Of Photosynthesis In Seven Diverse Rice Genotypes, Megan Reavis, Larry C. Purcell, Andy Pereira, Kusum Naithani

Biological Sciences Faculty Publications and Presentations

Introduction: Light response curves are widely used to quantify phenotypic expression of photosynthesis by measuring a single sample and sequentially altering light intensity within a chamber (sequential method) or by measuring different samples that are each acclimated to a different light level (non-sequential method). Both methods are often conducted in controlled environments to achieve steady-state results, and neither method involves equilibrating the entire plant to the specific light level.

Methods: Here, we compare sequential and non-sequential methods in controlled (greenhouse), semi-controlled (plant grown in growth chamber and acclimated to field conditions 2-3 days before measurements), and field environments. We selected …

Structural Basis Of Signal Transduction Within Environmental Sensing Pas Regulated Ser/Thr Kinases, Roksana Azad

Dissertations, Theses, and Capstone Projects

To sense environmental cues, nature has evolved molecular switches that are widely used across life. This process often relies on environmentally controlled PPIs (Protein-Protein Interactions) within a sensory domain that senses various stimuli and alters the functional activities of downstream effectors. This study focused on the superfamily of PAS (Per-ARNT-Sim) environmental sensory domains and their roles in regulating two Ser/Thr Kinases (STKs). PAS domains achieve their regulatory control by internally binding small molecule ligands/cofactors (e.g., O₂ binding to heme …

Mineral Licks As A Potential Nidus For Parasite Transmission, William J. Severud, Todd M. Kautz, Jerrold L. Belant, Seth A. Moore

Natural Resource Management Faculty Publications

Discrete landscape features can concentrate animals in time and space, leading to non-random interspecific encounters. These encounters have implications for predator-prey interactions, habitat selection, intraspecific competition, and transmission of parasites and other pathogens. The lifecycle of the parasitic nematode Parelaphostrongylus tenuis requires an intermediate host of a terrestrial gastropod. Natural hosts of P. tenuis are whitetailed deer, and an aberrant host of conservation concern is moose, which are susceptible to high levels of mortality as a naive host to the parasite. Intermediate hosts become infected when P. tenuis larvae are shed in deer feces, then consumed or enter the gastropod …

Long-Term Impacts Of Conservation Pasture Management In Manuresheds On System-Level Microbiome And Antibiotic Resistance Genes, Mitiku Mihiret Seyoum, Amanda Ashworth, Kristina M. Feye, Steven C. Ricke, Phillip R. Owens, Philip A. Moore Jr., Mary Savin

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Animal manure improves soil fertility and organic carbon, but long-term deposition may contribute to antibiotic resistance genes (ARGs) entering the soil-water environment. Additionally, long-term impacts of applying animal manure to soil on the soil-water microbiome, a crucial factor in soil health and fertility, are not well understood. The aim of this study is to assess: (1) impacts of long-term conservation practices on the distribution of ARGs and microbial dynamics in soil, and runoff; and (2) associations between bacterial taxa, heavy metals, soil health indicators, and ARGs in manures, soils, and surface runoff in a study following 15 years of continuous …

Factors Affecting California Grassland Biodiversity: Two Case Studies, Nora Bales

Master's Theses

Biodiversity loss over the last century has been significant and is projected to increase. Biodiversity loss is accelerating due to climate change and habitat loss and degradation. Biodiversity supports key ecosystem services including pollination services, climate regulation, and water filtration. Biodiversity conservation is a top priority for land managers and researchers, however many ecological studies with practical applications lack a thorough understanding of the soil environment in their study system. We conducted two case studies integrating soil and plant data to answer management questions. The first case study investigated the relationship between a threatened plant, Hooveria purpurea var. purpurea and …

Maize Leaf Angle Genetic Gain Is Slowing Down In The Last Decades, Elvis F. Elli, Jode Edwards, Jianming Yu, Slobodan Trifunovic, Douglas M. Eudy, Kevin R. Kosola, Patrick S. Schnable, Kendall R. Lamkey, Sotirios V. Archontoulis

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Quantifying historical changes in maize leaf angle and factors affecting it can enhance our understanding of canopy architecture and light capture, and hence crop productivity. Our objectives were to (1) quantify leaf angle genetic gain per canopy position in Bayer's legacy maize (Zea mays L.) hybrids; (2) dissect the contribution of breeding from plant density on historical changes in leaf angle; and (3) synthesize our findings with literature to determine leaf angle changes over a century of breeding. We measured leaf angle in 78 maize hybrids released between 1980 and 2020 across eight environments in the US Corn Belt. …

An Attempt At Fixing The Oversimplification Of Nightshades' (Genus Solanum) Epidermal Hair Complexity, Sakshi Watts, Rupesh Kariyat

Entomology and Plant Pathology Faculty Publications and Presentations

OPINION article

An attempt at fixing the oversimplification of Nightshades’ (genus Solanum) epidermal hair complexity

Dicamba Off-Target Movement From Applications On Soybeans At Two Growth Stages, Greg R. Kruger, Guilherme S. Alves, Kasey Schroeder, Jeffrey A. Golus, Daniel B. Reynolds, Darrin M. Dodds, Ashli E. Brown, Bradley K. Fritz, Wesley C. Hoffmann

Department of Agronomy and Horticulture: Faculty Publications

The objective of this study was to evaluate dicamba off-target movement during and after applications over soybean at two growth stages. Dicamba-tolerant soybean [Glycine max (L.) Merr.] at V3 and R1 growth stages in Nebraska and Mississippi fields were treated with diglycolamine salt of dicamba (560 g ae ha⁻¹), potassium salt of glyphosate (1260 g ae ha⁻¹), and a drift-reducing adjuvant (0.5% v v⁻¹). Filter papers positioned outside the sprayed area were used to determine primary movement and air samplers positioned at the center of sprayed area were used to calculate dicamba flux …

Effects Of Cover Crop, N And Residue Management On The Financial Sustainability Of Processing Tomatoes In Southwestern Ontario, Jamison Kerr, Aaron De Laporte, Alfons Weersink, Rich J. Vyn, Laura L. Van Eerd

Faculty Work Comprehensive List

Given the potential environmental and economic sustainability consequences of cover crop adoption, N fertilizer application, and residue management, this study focuses on the yield and financial effects of these on processing tomato production in Ontario, Canada. The study employs financial modeling using field data from a long-term cover crop experiment (oat, cereal rye, radish, and a radish-rye mixture) from 2010 to 2020. Averaged over six experimental years, compared to no cover (87 Mg ha−1) radish (99.6 Mg ha−1) and radish-rye mix (95.2 Mg ha−1) cover crops produce statistically significantly higher tomato yields as isolated practices, increasing farm net returns by …

Bison Alter The Northern Yellowstone Ecosystem By Breaking Aspen Saplings, Luke E. Painter, Robert L. Beschta, William J. Ripple

Aspen Bibliography

The American bison (Bison bison) is a species that strongly interacts with its environment, yet the effects of this large herbivore on quaking aspen (Populus tremuloides) have received little study. We documented bison breaking the stems of aspen saplings (young aspen > 2 m tall and ≤ 5 cm in diameter at breast height) and examined the extent of this effect in northern Yellowstone National Park (YNP). Low densities of Rocky Mountain elk (Cervus canadensis) after about 2004 created conditions conducive for new aspen recruitment in YNP's northern ungulate winter range (northern range). We sampled …

A Follow-Up Survey To Assess Stakeholders’ Perspectives On Weed Management Challenges And Current Practices In Nebraska, Usa, Shawn T. Mcdonald, Debalin Sarangi, Jennifer M. Rees, Amit J. Jhala

Department of Agronomy and Horticulture: Faculty Publications

Stakeholders across the state of Nebraska, USA, were surveyed in 2019–2020 to assess problem weeds and weed management practices in agronomic crops. A total of 420 complete responses were obtained across four Nebraska districts (Northeast, Panhandle, Southeast, and West Central). Accumulated across the state, 65.5% of farmed or scouted crop ground in Nebraska was under no-till production, with the major crops being corn and soybean representing 39.3% and 30.7% of agronomic crop production area, respectively. Palmer amaranth, horseweed, waterhemp, kochia, and giant ragweed were ranked the most problematic weeds. In a 2014–2015 survey, Palmer amaranth was the sixth most problematic …

Evaluation Of Organic And Synthetic Herbicides Applications On Indicators Of Soil Health And Weed Suppression In A Conventional Cropping System In Louisiana, Caitlin Denux

LSU Doctoral Dissertations

Synthetic herbicides, with their varying modes of action, are well known for their efficiency in the suppression and control of weed species in U.S. agriculture. However, the consequences of using synthetic herbicides without attention to the surrounding environment can produce chemical run-off, changes in soil health and soil health conditions, and create herbicide-resistant weeds. These consequences have encouraged growers to find alternatives in their weed management programs. In this study, organic and synthetic herbicides were assessed on how well they performed in weed suppression surveys, and their potential effects on soil health indicators. Commonly used indicators include soil pH, β-glucosidase …

Evaluation Of Site-Specific, Zone Management In Northeast Arkansas Cotton, Nelson Ray Benson

Student Theses and Dissertations

Temporal and spatial variations in crop performance are common in agricultural production fields in northeastern Arkansas. With the alluvial soils of the Mississippi Delta region, within-field soil texture can range from coarse sand to heavy clay. Such variability influences chemical and physical soil properties that affect yield potential of the region’s commercial cropping systems. With advances in precision management, delineating large commercial fields into zones of homogenous production potential could increase profitability and improve efficiency. Standardized criteria for defining homogeneity within potential delineation zones have not been developed or field-tested in the region, which includes Mississippi County, Arkansas, the largest …

The Evolving Definition Of Plant Cell Type, Sahand Amini, Jeffrey J. Doyle, Marc Libault

Department of Agronomy and Horticulture: Faculty Publications

In 1665 Robert Hooke, looking at cork through his microscope, discovered that plants are composed of elementary structures he named “cells”. Variation in the expression of a single genome in a complex eukaryotic organism guides the initiation, maturation, physiology, and biochemistry of cells with different shapes and sizes, playing different structural and functional roles in space and time. How many kinds of cells—”cell types”— an organism possesses of course depends on the organism’s cellular complexity, but the plasticity within a cell type fuels the emergence of the concept of cell state (Figure 1). The transition between cell states is driven …