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The Roles Of Rhle And Hfq In Srna-Dependent Gene Regulation, Abeykoon Jayalath Iresha Sandeepanie Rathnayake

Wayne State University Theses

THE ROLES OF RHLE AND HFQ IN SRNA-DEPENDENT GENE REGULATION

by

ABEYKOON JAYALATH IRESHA SANDEEPANIE RATHNAYAKE

DECEMBER 2010

Advisor: Dr. Andrew Feig

Major: Chemistry

Degree: Master of Science

Bacteria are adapted to live in diverse environmental conditions. Thus, they show excellent tolerance and response to extreme environmental conditions caused by low or high temperatures, high salinity, reactive oxygen species or high nutrient concentrations. sRNAs have been identified and characterized as cis-acting or trans-acting post-transcriptional regulators in diverse cellular processes including virulence and adaptation to environmental stress (11,12,14,15). Interactions of sRNAs and target mRNAs result in translational repression, translational activation or/and …

Arsenic Speciation Analysis Of Biological Fluids : A Study Of Liquid Chromatography Coupled To Analytical Atomic Spectrometric Instrumentation, Kanna Ito

Legacy Theses & Dissertations (2009 - 2024)

Arsenic exists as many different chemical forms including inorganic, methylated and dietary species. The toxicity of these species varies: some are highly toxic and can cause adverse health effects in many parts of the body; others are considered relatively non-toxic. Monitoring arsenic exposure is usually accomplished by its direct measurement in biological fluids. Urine is the specimen of choice for assessing arsenic exposure, because of its short biological half-life in blood. There have been very few studies of arsenic species in blood, yet such research can provide valuable information on arsenic distribution and its metabolism in the body.

Adverse Outcome Pathways And Ecological Risk Assessment: Bridging To Population-Level Effects, Vincent J. Kramer, Matthew A. Etterson, Markus Hecker, Cheryl A. Murphy, Guritno Roesijadi, Daniel J. Spade, Julann A. Spromberg, Magnus Wang, Gerald T. Ankley

United States Department of Commerce: Staff Publications

Maintaining the viability of populations of plants and animals is a key focus for environmental regulation. Population-level responses integrate the cumulative effects of chemical stressors on individuals as those individuals interact with and are affected by their conspecifics, competitors, predators, prey, habitat, and other biotic and abiotic factors. Models of population-level effects of contaminants can integrate information from lower levels of biological organization and feed that information into higher-level community and ecosystem models. As individual-level endpoints are used to predict population responses, this requires that biological responses at lower levels of organization be translated into a form that is usable …

Pathogenic And Opportunistic Microorganisms In Caves, Valme Jurado, Leonila Laiz, Veronica Rodriguez-Nava, Patrick Boiron, Bernardo Hermosin, Sergio Sanchez-Moral, Cesareo Saiz-Jimenez

International Journal of Speleology

With today’s leisure tourism, the frequency of visits to many caves makes it necessary to know about possible potentially pathogenic microorganisms in caves, determine their reservoirs, and inform the public about the consequences of such visits. Our data reveal that caves could be a potential danger to visitors because of the presence of opportunistic microorganisms, whose existence and possible development in humans is currently unknown.

The Impact Of Conservation On The Status Of The World's Vertebrates, Michael Hoffmann, Craig Hilton-Taylor, Ariadne Angulo, Monika Böhm, Thomas M. Brooks, Stuart H. M. Butchart, Kent E. Carpenter, Janice Chanson, Beth A. Polidoro, Jonnell C. Sanciangco

Biological Sciences Faculty Publications

Using data for 25,780 species categorized on the International Union for Conservation of Nature Red List, we present an assessment of the status of the world's vertebrates. One-fifth of species are classified as Threatened, and we show that this figure is increasing: On average, 52 species of mammals, birds, and amphibians move one category closer to extinction each year. However, this overall pattern conceals the impact of conservation successes, and we show that the rate of deterioration would have been at least one-fifth again as much in the absence of these. Nonetheless, current conservation efforts remain insufficient to offset the …

Antibodies To Influenza And West Nile Viruses In Horses In Mexico, M. A. Loroño-Pino, J. A. Farfan-Ale, J. E. Garcia-Rejon, M. Lin, E. Rosado-Paredes, F. I. Puerto, A. Bates, J. J. Root, A. B. Franklin, H. J. Sullivan, B. J. Blitvich

United States Department of Agriculture Wildlife Services: Staff Publications

INFLUENZA A virus (IAV) (family Orthomyxoviridae) is a highly infectious respiratory pathogen of birds and mammals, including human beings and horses (Palese and Shaw 2007). The virus is classified into different subtypes based on the antigenic properties of the haemagglutinin (HA) and neuraminidase (NA) proteins. Sixteen HA subtypes (H1 to H16) and nine NA subtypes (N1 to N9) have been identified (Fouchier and others 2005). Two subtypes, H3N8 and H7N7, have been isolated from horses. The H7N7 subtype was first isolated from a horse in Czechoslovakia in 1956 (Prague/56) (Sovinova and others 1958), and the H3N8 subtype was first isolated …

Conference Session Reports From The 2010 Annual Conference, Diane Foster, Lutishoor Salisbury Mrs, Hilary M. Davis, Claudia Lascar, Khue Duong, Daureen Nesdill, Dana Roth, Regina Cannon, Theo Jones-Quartey, A. Ben Wagner, Lea Wade, Carol Debiak

Sci-Tech News

No abstract provided.

Feral Swine Behavior Relative To Aerial Gunning In Southern Texas, Tyler A. Campbell, David Long, Bruce Leland

United States Department of Agriculture Wildlife Services: Staff Publications

Feral swine (Sus scrofa) impact resources through their destructive feeding behavior, competition with native wildlife, and impacts to domestic animal agriculture. We studied aerial gunning on feral swine to determine if aerial gunning altered home range and core area sizes, distances between home range centroids, and distances moved by surviving individuals. We collected data before, during, and after aerial gunning in southern Texas. Using Global Positioning System collars deployed on 25 adult feral swine at 2 study sites, we found home range and core area sizes did not differ before and after aerial gunning. However, feral swine moved …

The Economic Impacts To Commercial Farms From Invasive Monkeys In Puerto Rico, Richard M. Engeman, Jose´ E. Laborde, Bernice U. Constantin, Stephanie A. Shwiff, Parker Hall, Anthony Duffiney, Freddie Luciano

United States Department of Agriculture Wildlife Services: Staff Publications

Beginning in the 1930s and continuing through the 1970s, rhesus macaques and patas monkeys were introduced to presumed secure locations, primarily coastal islets, in Puerto Rico. Escapes into the wild began almost immediately after introduction. Today the combined range of the two species covers approximately 600 km² of southwestern Puerto Rico, where serious conflicts with agricultural interests have resulted. The Puerto Rico Department of Agriculture surveyed about 90% of commercial farmers in the range of the monkeys to begin quantifying damage by monkeys and the associated economic losses during the years 2002–2006. During that time, total economic losses by …

Mite-Filled Cyst On A Brown-Headed Cowbird (Molothrus Ater) In Florida, Usa, Marilyn G. Spalding, James W. Mertins, Matthew J. Reetz, Kandy L. Keacher, Michael L. Avery, Ellis C. Greiner

United States Department of Agriculture Wildlife Services: Staff Publications

A large, partly pedunculated mass on the scapular area of a wild-caught captive Brown-headed Cowbird (Molothrus ater) consisted of a multiloculated keratin cyst inhabited by a new species of harpirhynchid mite (Harpirhynchus quasimodo). The mass did not interfere with flight or behavior. This is the first record of such an infestation of cowbirds in Florida.

Promiscuous Mating In Feral Pigs (Sus Scrofa) From Texas, Usa, Johanna Delgado-Acevedo, Angeline Zamorano, Randy W. Deyoung, Tyler A. Campbell, David G. Hewitt, David B. Long

United States Department of Agriculture Wildlife Services: Staff Publications

Context. Feral pigs represent a significant threat to agriculture and ecosystems and are disease reservoirs for pathogens affecting humans, livestock and other wildlife. Information on the behavioural ecology of feral pigs might increase the efficiency and effectiveness of management strategies.

Aims. We assessed the frequency of promiscuous mating in relation to oestrous synchrony in feral pigs from southern Texas, USA, an agroecosystem with a widespread and well established population of feral pigs. An association between multiple paternity of single litters and synchrony of oestrous may indicate alternative mating strategies, such as mateguarding.

Methods. We collected gravid sows at …

Detecting Phenotype-Specific Interactions Between Biological Processes From Microarray Data And Annotations, Nadeem Ahmed Ansari

Wayne State University Dissertations

The development of high throughput technologies such as DNA microarrays has enabled researchers to measure expression levels on a genomic scale. Correct and efficient biological interpretation of the voluminous data generated by these technologies, however, remains a challenging problem. A commonly used approach in interpreting the results of such high throughput experiments is to map the list of differentially expressed (DE) genes to gene ontology (GO) terms, which provides a list of biological processes, biochemical functions, and cellular locations associated with the DE genes. A previously unexplored aspect is the identifications of unusual associations between biological processes. Such associations may …

S-Nitrosothiols: Formation, Decomposition, Reactivity And Possible Physiological Effects, Moshood Kayode Morakinyo

Dissertations and Theses

Three biologically-active aminothiols cysteamine (CA), DL-cysteine (CYSH) and DL-homocysteine, were studied in this thesis. These aminothiols react with nitrous acid (HNO₂), prepared in situ, to produce S-nitrosothiols (RSNOs): S-nitrosocyteamine (CANO), S-nitrosocysteine (CYSNO) and S-nitrosohomocysteine (HCYSNO). They also react with S-nitrosoglutathione (GSNO) and S-nitroso-N-acetylpenicillamine (SNAP) through a transnitrosation reaction to produce their corresponding RSNOs. A detailed kinetics and mechanistic study on the formation of these RSNOs and their subsequent decomposition to release nitric oxide (NO) were studied.

For all three aminothiols the stoichiometry of their reaction with nitrous acid is strictly 1:1 with the formation of one mole …

Genbank, Dennis A. Benson, Ilene Karasch-Mizrachi, David J. Lipman, James Ostell, Eric W. Sayers

Harold W. Manter Laboratory of Parasitology: Library Materials

GenBank(R) is a comprehensive database that contains publicly available nucleotide sequences for more than 380,000 organisms named at the genus level or lower, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole genome shotgun (WGS) and environmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through the NCBI Entrez retrieval system that integrates data …

Host-Specificity Of Myxoma Virus: Pathogenesis Of South American And North American Strains Of Myxoma Virus In Two North American Lagomorph Species, L. Silvers, D. Barnard, F. Knowlton, B. Inglis, A. Labudovic, M.K. Holland, P.A. Janssens, B.H. Van Leeuwen, P.J. Kerr

United States Department of Agriculture Wildlife Services: Staff Publications

The pathogenesis of South American and North American myxoma viruses was examined in two species of North American lagomorphs, Sylvilagus nuttallii (mountain cottontail) and Sylvilagus audubonii (desert cottontail) both of which have been shown to have the potential to transmit the South American type of myxoma virus. Following infection with the South American strain (Lausanne, Lu), S. nuttallii developed both a local lesion and secondary lesions on the skin. They did not develop the classical myxomatosis seen in European rabbits (Oryctolagus cuniculus). The infection at the inoculation site did not resolve during the 20-day time course of the …

Seroprevalence Of Equine Influenza Virus In Northeast And Southern Mexico, B. J. Blitvitch, L. A. Ibarra-Juarez, A. J. Cortes-Guzman, J. J. Root, A. B. Franklin, H. J. Sullivan, I. Fernandez-Salas

United States Department of Agriculture Wildlife Services: Staff Publications

Equine influenza A virus (EIV) is a highly infectious respiratory pathogen of horses (Hannant and Mumford 1996, Palese and Shaw 2007). The illness is characterised by an abrupt onset of fever, depression, coughing and nasal discharge, and is often complicated by secondary bacterial infections that can lead to pneumonia and death. Two subtypes of EIV, H3N8 and H7N7, have been isolated. The H7N7 subtype was first isolated from a horse in Czechoslovakia in 1956 (Prague/56), and the H3N8 subtype was first isolated from a horse in Miami in 1963 (Sovinova and others 1958, Waddell and others 1963). The last confirmed …

New Evidence Suggests Southern China As A Common Source Of Multiple Clusters Of Highly Pathogenic H5n1 Avian Influenza Virus, Bin Wu, Chengmin Wang, Guoying Dong, Yunhai Guo, Dale L. Nolte, Thomas Jude Deliberto, Jianguo Xu, Mingxing Duan, Hongxuan He

United States Department of Agriculture Wildlife Services: Staff Publications

Highly pathogenic H5N1 avian influenza is considered an avian disease, although there is some evidence of limited human-to-human transmission of the virus. A global effort is underway to control or eradicate the highly pathogenic H5N1 avian influenza virus in poultry and prevent human exposure, both of which may also reduce the risk of pandemic emergence. Hemagglutinin gene sequences from 215 human H5N1 influenza viruses were used to trace the source and dispersal pattern of human H5N1 influenza viruses on a global scale. A mutation network and phylogenetic analyses of the hemagglutinin gene show that human H5N1 influenza viruses can be …

Seroprevalence Of Equine Influenza Virus In Northeast And Southern Mexico, B. J. Blitvich, L. A. Ibarra-Juarez, A. J. Cortes-Guzman, J. J. Root, A. B. Franklin, H. J. Sullivan, I. Fernandez-Salas

United States Department of Agriculture Wildlife Services: Staff Publications

EQUINE influenza A virus (EIV) is a highly infectious respiratory pathogen of horses (Hannant and Mumford 1996, Palese and Shaw 2007). The illness is characterized by an abrupt onset of fever, depression, coughing and nasal discharge, and is often complicated by secondary bacterial infections that can lead to pneumonia and death. Two subtypes of EIV, H3N8 and H7N7, have been isolated. The H7N7 subtype was first isolated from a horse in Czechoslovakia in 1956 (Prague/56), and the H3N8 subtype was first isolated from a horse in Miami in 1963 (Sovinova and others 1958, Waddell and others 1963). The last confirmed …

Seeking A Second Opinion: Uncertainty In Disease Ecology, Brett T. Mcclintock, James D. Nichols, Larissa L. Bailey, Darryl I. Mackenzie, William. L. Kendall, Alan B. Franklin

United States Department of Agriculture Wildlife Services: Staff Publications

Analytical methods accounting for imperfect detection are often used to facilitate reliable inference in population and community ecology. We contend that similar approaches are needed in disease ecology because these complicated systems are inherently difficult to observe without error. For example, wildlife disease studies often designate individuals, populations, or spatial units to states (e.g., susceptible, infected, post-infected), but the uncertainty associated with these state assignments remains largely ignored or unaccounted for. We demonstrate how recent developments incorporating observation error through repeated sampling extend quite naturally to hierarchical spatial models of disease effects, prevalence, and dynamics in natural systems. A highly …

A Deadline-Driven Epidemic Data Collection Protocol Suitable For Tracking Interpersonnel Rendezvous, Avranil Tah

Open Access Theses & Dissertations

This thesis describes a peer-to-peer wireless data collection algorithm that uses epidemic communication to propagate time-sensitive sequentially sampled data records from sensors toward infrastructure connected upload stations via mobile data mules. These records are labeled with sequence numbers and delivery deadlines, and are transmitted in sequential order. Delivery deadlines enable transmission prioritization and trigger alarms warning of violations.

The sequential ordering of records simplifies the protocols transmission-control and garbage collection mechanisms: only two monotonically increasing scalar sequence indices associated with a particular sensor must be exchanged between peers prior to selecting which records need to be communicated. One of these …

Observer-Dependent Model For Analyzing Subjective Parameters In Epidemiology, Milad Zarei

Open Access Theses & Dissertations

Although medical technologies for preventing the contagion and spread of infectious diseases have improved steadily throughout the last century, new infectious diseases are still emerging and spreading swiftly. The modeling of infectious disease spread is crucial in addressing the lack of predictive ability in epidemiology. Managing the spread of infectious diseases requires processing quantitative epidemiological data and the ability to capture the dynamics of the infectious disease in order to provide a measure of control.

In this thesis, I have introducing cognitive biases in diseases spread modeling. For the first time, to the author's knowledge, the human subjective experience has …

Effects Of Livestock Antibiotics On Nitrification, Denitrification, And Microbial Community Compositon In Soils Along A Topographic Gradient, Sagarika Banerjee

University of Kentucky Master's Theses

Several types of antibiotics (roxarsone, virginiamycin, and bacitracin) are widely included in poultry feed to improve animal growth yields. Most of the antibiotics are excreted in manure which is subsequently applied to soils. One concern with this practice is that antibiotics may affect several microbially-mediated nutrient cycling reactions in soils that influence crop productivity and water quality. The main objectives of this study were to determine the effects of livestock antibiotics on nitrification, denitrification, and microbial community composition in soils along a topographic gradient. These objectives were addressed in a series of lab experiments by monitoring changes in inorganic N …

Progress Towards The Synthesis Of Type B Polycyclic Polyprenylated Acylphloroglucinol 7-Epi-Clusianone, Pushpa Suresh Jayasekara Mudiyanselage

University of Kentucky Doctoral Dissertations

Plants of the family Guttiferae produce polycyclic polyprenylated acylphloroglucinols (PPAPs), which have interesting biological activities including anticancer and antibacterial properties. The main structural features of PPAPs comprise of bicyclo[3.3.1]nonane-2,4,9-triketone with one acyl group together with prenyl, geranyl, or other C₁₀H₁₇ groups. 7-epi-Clusianone, a type B PPAP with C-7 endo stereochemistry, is being approached by establishing the cis relationship with C(4) allyl group and C(2) methyl ester in the early stage of the synthesis. Then C(2) methyl ester is converted to alkyne aldehyde and syn reduction followed by intramolecular aldol reaction to give bicyclo[3.3.1]nonane structure with …

Synthesis Of Some Pyridazine Derivatives Carrying Urea, Thiourea, And Sulfonamide Moieties And Their Antimicrobial Activity, Deni̇z S. Doğruer, Şölen Urlu, Ti̇jen Önkol, Berri̇n Özçeli̇k, M. Fethi̇ Şahi̇n

Turkish Journal of Chemistry

Some pyridazine derivatives carrying urea, thiourea, and sulfonamide groups were synthesized and evaluated for their antimicrobial activity against gram-positive and gram-negative bacteria, and fungi by using broth microdilution. The structures of these new compounds were confirmed by ^1H-NMR, mass spectrum, and elemental analysis. The synthesized compounds exhibited generally promising inhibitory activity against S. aureus (MIC ranging from 2 to 4 \mu g/mL) and E. coli (MIC ranging from 4 to 16 \mu g/mL). Moreover, all compounds showed antifungal activity against both C. albicans and C. parapsilosis, with a MIC value of 8 \mu g/mL.

Synthesis And Antimicrobial Activities Of 2-(5-Mercapto)-1,3-Oxadiazol-2-Ylmethyl-1,2,4-Triazol-3-One Derivatives, Nesli̇han Demi̇rbaş, Ahmet Demi̇rbaş, Hakan Bektaş, Şengül Alpay Karaoğlu, Deni̇z Şahi̇n

Turkish Journal of Chemistry

The synthesis of 4-amino-2-[(5-mercapto-1,3,4-oxadiazol-2- yl)methyl]-5-(4-methylphenyl)-2,4-dihydro-3H-1,2,4-triazol-3-one (2) and 4-amino-2-[(4-amino-5-mercapto-4H-1,2,4-triazol-3-yl)methyl]- 5-(4-methylphenyl)-2,4-dihydro-3H-1,2,4-triazol-3-one (5) was performed starting from 2-[4-amino-3-(4-methylphenyl)-5-oxo-4,5- dihydro-1H-1,2,4-triazol-1-yl]acetohydrazide (1). The treatment of 2 and 5 with 4-fluorobenzaldehyde (for 8) or salicylaldehyde (for 6) afforded the corresponding Schiff bases (6 and 8). The condensation of 5 with phenacyl bromide produced 4-amino-5-(4-methylphenyl)-2- [(6-phenyl-7H-[1,2,4]triazolo[3,4-b][1,3,4]thiadiazin-3-yl)methyl]- 2,4-dihydro-3H-1,2,4-triazol-3-one (7). The alkylation of 2 and 8 was carried out by using methyl iodide in basic media. Compounds 3 and 10a,b were prepared by aminoalkylation of 2 and 8 with 4-fluorophenyl piperazine, morpholine, or 4-methyl piperazine in the presence of formaldehyde. The synthesized compounds were screened for their antimicrobial activities …

Capillary Electrophoresis Of Pteridines In Urine And Plants And Quantification Of Pharmaceutical And Personal Care Products In Missouri Waste Water, Stephen E. Gibbons

Doctoral Dissertations

"Capillary electrophoresis (CE) is a powerful technique that separates molecules based on their respective charge and hydrodynamic size. The major advantages of CE are high separation efficiency, small sample volume requirements, simple to no sample preparation and often organic solvents are not required for the separation.

The work presented in this dissertation utilized capillary electrophoresis for the analysis two different classes of compounds in different matrices. The first project investigated pteridines in urine and plants. The second project investigated pharmaceutical and personal care products (PPCP's) in Missouri waste water.

As cancer continues to be one of the top three causes …

Bioaerosols And The Risk Of Upper Respiratory Infection In Dental Hygienists, Christen Rebecca Gautreau

LSU Master's Theses

Multitudes of pathogenic and infectious microbes are known to spread via contaminated aerosols. Dental personnel have an increased incidence of respiratory infections. Ultrasonic scaling procedures are reported to produce the largest amounts of contaminated aerosols of any dental procedure. The goal of the current study was to see if dental hygienists are at an increased risk of respiratory infections during the performance of their job and to see if certain dental procedures had a significant effect on this risk. This study was conducted at the Dental Hygiene Clinic of the Louisiana State University School of Dentistry in New Orleans, LA. …

Oregon's Fish And Wildlife In A Changing Climate, Mark A. Hixon, Stanley V. Gregory, W. Douglas Robinson, C. Scott Baker, Harold P. Batchelder, Clinton Epps, Tiffany S. Garcia, Susan M. Haig, Ricardo M. Letelier, David A. Lytle, Bruce A. Menge, Jeffery C. Miller, David L.G. Noakes, William T. Peterson, James M. Rice, Steven S. Rumrill, Carl B. Schreck, Robert M. Suryan, Mark D. Sytsma, Angelicque E. White

Center for Lakes and Reservoirs Publications and Presentations

Chapter 7 in: The Oregon Climate Change Assessment Report

Oregon's fish and wildlife include animals on land, fish and other species in rivers and lakes, and various kinds of sea life in estuaries and coastal ocean. Oregon is one of the most ecologically diverse states in the country. The state’s robust biodiversity, some of which is already threatened or endangered -- inhabits complex and dynamic ecosystems that we have only begun to understand, let alone examine in terms of climate change.It is clear that the abundance and distribution of species are shifting already and will shift more rapidly as habitats …

Assessing North American Influenza Dynamics With Hierarchical Spatio-Temporal Models, Jessica Anderson

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

We present a general statistical modeling framework to characterize continental-level influenza dynamics in the United States for the purposes of examining state-level epidemiological sources and sinks. The methods we describe depend directly on state-level influenza data that are updated weekly and available on the internet. Advances in search engine query analysis have provided powerful new tools for collecting epidemiological data and, when used in conjunction with sophisticated statistical models, allow for the identification and quantification of the flow of influenza across the continental United States. Our proposed methods, when conditioned on this comprehensive search query product, can provide unprecedented scientific …

Field Evaluation Of The Immunocontraceptive Gonacontm In Reducing Eastern Gray Squirrel Fecundity In Urban Areas, Murali Pai

All Dissertations

The purpose of this study was to evaluate the immunocontraceptive GonaCon^TM in reducing fecundity in Eastern gray squirrel (EGS) (Sciurus carolinensis) in urban areas. Using a modified box trap design, 317 EGS were captured during four trapping sessions on a 5.66 ha site on Clemson University's main campus. EGS were handled using a restraint cone and sexed, weighed, ear-tagged and implanted with a microchip at the nape of the neck on all 'original' captures and later identified in subsequent captures as 'recaptures.' Blood samples and morphometric data were obtained on EGS before the immunocontraceptive GonaCon^TM was administered by …