Digital Commons Network^™

Image Segmentation And Analysis For Automated Classification Of Traumatic Pelvic Injuries, Simina Vasilache

Theses and Dissertations

In the past decades, technical advances have allowed for the collection and storage of more types and larger quantities of medical data. The increase in the volume of existing medical data has increased the need for processing and analyzing such data. Medical data holds information that is invaluable for diagnostic as well as treatment planning purposes. Presently, a large portion of the data is not optimally used towards medical decisions because information contained in the data is inaccessible through simple human inspection, or traditional computational methods. In the field of trauma medicine, where caregivers are frequently confronted with situations where …

Nonparametric And Semiparametric Analysis Of Current Status Data Subject To Outcome Misclassification, Victor G. Sal Y Rosas, James P. Hughes

UW Biostatistics Working Paper Series

In this article, we present nonparametric and semiparametric methods to analyze current status data subject to outcome misclassification. Our methods use nonparametric maximum likelihood estimation (NPMLE) to estimate the distribution function of the failure time when sensitivity and specificity may vary among subgroups. A nonparametric test is proposed for the two sample hypothesis testing. In regression analysis, we apply the Cox proportional hazard model and likelihood ratio based confidence intervals for the regression coefficients are proposed. Our methods are motivated and demonstrated by data collected from an infectious disease study in Seattle, WA.

Section Abstracts: Astronomy, Mathematics, And Physics & Materials Science

Virginia Journal of Science

Abstracts of papers of the Astronomy, Mathematics, and Physics (Including Materials Science) Section for the 88th Annual Meeting of the Virginia Academy of Science, May 20-21, 2010, James Madison University, Harrisonburg, VA.

Scwds Briefs: Volume 27, Number 1 (April 2010), Gary L. Doster , Editor, Scwds Briefs, Michael J. Yabsley

Southeastern Cooperative Wildlife Disease Study: Publications

White Nose Syndrome Update

Respiratory Disease in Gopher Tortoises

Feral Hog Information

Frogs and Salmonella

Feral Cats and Wildlife

The Early Worm Gets the Bird

TB in Elephants

Accolades

Inhibitors Of NΑ-Acetyl-L-Ornithine Deacetylase: Synthesis, Characterization And Analysis Of Their Inhibitory Potency, J. Hlavacek, J. Picha, V. Vanek, J. Jiracek, J. Slaninova, V. Fucik, M. Budesinsky, Danuta M. Gillner, Richard C. Holz

Chemistry Faculty Research and Publications

A series of N ^α-acyl (alkyl)- and N ^α-alkoxycarbonyl-derivatives of l- and d-ornithine were prepared, characterized, and analyzed for their potency toward the bacterial enzyme N ^α-acetyl-l-ornithine deacetylase (ArgE). ArgE catalyzes the conversion of N ^α-acetyl-l-ornithine to l-ornithine in the fifth step of the biosynthetic pathway for arginine, a necessary step for bacterial growth. Most of the compounds tested provided IC₅₀ values in the μM range toward ArgE, indicating that they are moderately strong inhibitors. N ^α-chloroacetyl-l-ornithine (1g) was the best inhibitor tested toward ArgE providing an IC₅₀ value of 85 …

Evaluation Of Alternative Technologies To Supply Drinking Water To Marines In Forward Deployed Locations, Derek R. George

Theses and Dissertations

With recent increases, there are approximately 20,000 Marines deployed in the Helmand Province of Afghanistan. The cost of delivering bottled water to the troops is rapidly becoming unsustainable and convoys delivering bottled water are vulnerable to Improvised Explosive Devices (IEDs). Currently, raw water from indigenous sources, which has chemical and microbiological contaminants, is treated with reverse osmosis (RO), but only used for hygiene, with bottled water used for drinking. Due to the economic costs and risks to life of providing bottled water, decision-makers need to evaluate technology alternatives to treat raw water to supply safe drinking water. In this study, …

Adverse Outcome Pathways And Ecological Risk Assessment: Bridging To Population-Level Effects, Vincent J. Kramer, Matthew A. Etterson, Markus Hecker, Cheryl A. Murphy, Guritno Roesijadi, Daniel J. Spade, Julann A. Spromberg, Magnus Wang, Gerald T. Ankley

United States Environmental Protection Agency: Publications

Maintaining the viability of populations of plants and animals is a key focus for environmental regulation. Population-level responses integrate the cumulative effects of chemical stressors on individuals as those individuals interact with and are affected by their conspecifics, competitors, predators, prey, habitat, and other biotic and abiotic factors. Models of population-level effects of contaminants can integrate information from lower levels of biological organization and feed that information into higher-level community and ecosystem models. As individual-level endpoints are used to predict population responses, this requires that biological responses at lower levels of organization be translated into a form that is usable …

City Of San Luis Obispo: Community And Municipal Operations 2005 Baseline Greenhouse Gas Emissions Inventory, Geoffrey M. Chiapella

Master's Theses

The passage of AB 32 in 2006 initiated the need for city planners in California to consider the quantification of greenhouse gas emissions at the community level in order to develop policies and programs to reduce emissions in the future. Although local jurisdictions are not required to quantify and report emissions at this time, the AB 32 Climate Change Scoping Plan recommended a reduction goal for local governments of 15 percent below today’s levels by 2020 to ensure consistent reduction goals at the state and local levels.

ICLEI-Local Governments for Sustainability initiated the Cities for Climate Protection (CCP) campaign in …

Effects Of Metal Compounds With Distinct Physicochemical Properties On Iron Homeostasis And Antibacterial Activity In The Lungs: Chromium And Vanadium, Mitchell D. Cohen, Maureen Sisco, Colleen Prophete, Kotaro Yoshida, Lung-Chi Chen, Judith T. Zelikoff, Jason Smee, Alvin A. Holder, Jacqueline Stormhuerner, Debbie C. Crans, Andrew J. Ghio

Faculty Publications

In situ reactions of metal ions or their compounds are important mechanisms by which particles alter lung immune responses. The authors hypothesized that major determinants of the immunomodulatory effect of any metal include its redox behavior/properties, oxidation state, and/or solubility, and that the toxicities arising from differences in physicochemical parameters are manifest, in part, via differential shifts in lung iron (Fe) homeostasis. To test the hypotheses, immunomodulatory potentials for both pentavalent vanadium (V(V); as soluble metavanadate or insoluble vanadium pentoxide) and hexavalent chromium (Cr(VI); as soluble sodium chromate or insoluble calcium chromate) were quantified in rats after inhalation (5 h/day …

Chemical Ecology Of Animal And Human Pathogen Vectors In A Changing Global Climate, John A. Pickett, Michael A. Birkett, Sarah Y. Dewhirst, James G. Logan, Maurice O. Omolo, Baldwyn Torto, Julien Pelletier, Zainulabeuddin Syed, Walter S. Leal

All Peer-Reviewed Publications

Infectious diseases affecting livestock and human health that involve vector-borne pathogens are a global problem, unrestricted by borders or boundaries, which may be exacerbated by changing global climate. Thus, the availability of effective tools for control of pathogen vectors is of the utmost importance. The aim of this article is to review, selectively, current knowledge of the chemical ecology of pathogen vectors that affect livestock and human health in the developed and developing world, based on key note lectures presented in a symposium on "The Chemical Ecology of Disease Vectors" at the 25th Annual ISCE meeting in Neuchatel, Switzerland. The …

Culturally-Adapted And Audio-Technology Assisted Hiv/Aids Awareness And Education Program In Rural Nigeria: A Cohort Study, Ighovwerha Ofotokun, Jose Nilo G. Binongo, Eli S. Rosenberg, Michael Kane, Rick Ifland, Jeffrey L. Lennox, Kirk A. Easley

Faculty Articles

Background: HIV-awareness programs tailored toward the needs of rural communities are needed. We sought to quantify change in HIV knowledge in three rural Nigerian villages following an integrated culturally adapted and technology assisted educational intervention.

Methods: A prospective 14-week cohort study was designed to compare short-term changes in HIV knowledge between seminar-based education program and a novel program, which capitalized on the rural culture of small-group oral learning and was delivered by portable digital-audio technology.

Results: Participants were mostly Moslem (99%), male (53.5%), with no formal education (55%). Baseline HIV knowledge was low (< 80% correct answers for 9 of the 10 questions). Knowledge gain was higher (p < 0.0001 for 8 of 10 questions) in the integrated culturally adapted and technology-facilitated (n = 511) compared with the seminar-based (n = 474) program.

Conclusions: Baseline HIV-awareness was low. Culturally …

Diurnal Movements And Site Fidelity Of The Florida Manatee, Trichechus Manatus Latirostris, In Fort Lauderdale, Fl., Kym Walsh

HCNSO Student Theses and Dissertations

The diurnal movements of Florida manatees (Trichechus manatus latirostris) in warmwater refugia are poorly understood and these may prove critical in accurately estimating populations of these animals. Previous studies indicate that manatee populations in such refuges in Tampa Bay, FL, peak mid-day and decline towards evening when the animals leave to forage. This trend suggests that variation in the timing of aerial manatee population surveys may hamper accurate estimation of the true population size. Aerial survey counts are known to underestimate population size, yet the extent of the underestimation may be greater than expected. In this study data …

Introduction To The Basic Drivers Of Climate, Alison P. Stevens

School of Natural Resources: Faculty Publications

Climates on Earth vary from the warm, wet tropics to the cold, dry Arctic and Antarctic. What drives this variation?

Every day, we note the weather: temperature, rain, cloud cover, wind and humidity. Climate is the long-term prevailing weather in an area and is largely determined by temperature and precipitation. The climate in a desert is hot and dry. The climate in the tropics is warm and wet. The climate of a particular area is the largest determinant to the life found there. Climate is a key focus in ecology. Variations in climate include daily and seasonal cycles. Climatic variation …

Non-Destructive Estimation Pigment Content Ripening Quality And Damage In Apple Fruit With Spectral Reflectance In The Visible Range, Alexei E. Solovchenko, Olga B. Chivkunova, Anatoly A. Gitelson, Mark N. Merzlyak

School of Natural Resources: Faculty Publications

Modern non-destructive optical-reflectance-based techniques for estimation of pigment (chlorophyll, carotenoid, anthocyanin, and flavonol) contents, the rate of on- and off-tree ripening as well as for detection of common physiological disorders, such as sunscald, superficial scald, and water core, and other damages to apple fruit are an emphasis on the methods developed by the authors. The basic spectral features of fruit reflectance in the visible and near infra-red are briefly considered together with their implications for the development of algorithms for non-destructive pigment content assessment. The use of reflectance spectroscopy for estimating chlorophyll and carotenoid content as well as carotenoid/chlorophyll ratio …

Modeling Super-Spreading Events For Sars, Thembinkosi P. Mkhatshwa

Theses, Dissertations and Capstones

One of the intriguing characteristics of the 2003 severe acute respiratory syndrome (SARS) epidemics was the occurrence of super spreading events (SSEs). Super-spreading events for a specific infectious disease occur when infected individuals infect more than the average number of secondary cases. The understanding of these SSEs is critical to under- standing the spread of SARS. In this thesis, we present a modification of the basic SIR (Susceptible - Infected - Removed) disease model, an SIPR (Susceptible - Regular Infected - Super-spreader - Removed) model, which captures the effect of the SSEs.

Using R, Matt Bogard

Economics Faculty Publications

R is a statistical programming language with a command line interface that is becoming more and more popular every day. I have used R for data visualization, data mining/machine learning, as well as social network analysis. Initially embraced largely in academia, R is becoming the software of choice in various corporate settings.

Mathematical Biology At An Undergraduate Liberal Arts College, Stephen C. Adolph, Lisette G. De Pillis

All HMC Faculty Publications and Research

Since 2002 we have offered an undergraduate major in Mathematical Biology at Harvey Mudd College. The major was developed and is administered jointly by the mathematics and biology faculty. In this paper we describe the major, courses, and faculty and student research and discuss some of the challenges and opportunities we have experienced.

Correlation Between Normalized Ddifference Vvegetation Index And Malaria In A Subtropical Rain Forest Undergoing Rapid Anthropogenic Alteration, Nicole M. Wayant, Diego Maldonado, Antonieta Rojas De Arias, Blanca Cousino, Douglas G. Goodin

Center for Advanced Land Management Information Technologies: Publications

Time-series of coarse-resolution greenness values derived through remote sensing have been used as a surrogate environmental variable to help monitor and predict occurrences of a number of vector-borne and zoonotic diseases, including malaria. Often, relationships between a remotely-sensed index of greenness, e.g. the normalized difference vegetation index (NDVI), and disease occurrence are established using temporal correlation analysis. However, the strength of these correlations can vary depending on type and change of land cover during the period of record as well as inter-annual variations in the climate drivers (precipitation, temperature) that control the NDVI values. In this paper, the correlation between …

Scwds Briefs: Volume 25, Number 4 (January 2010), Gary L. Doster , Editor, Scwds Briefs, Michael J. Yabsley

Southeastern Cooperative Wildlife Disease Study: Publications

Table of Contents:

White Nose Syndrome News

CWD Found in Virginia

Serosurveys of Feral Swine

AI Serology in Wild Birds

Chagas Disease Studies

SCWDS Bont Tick Surveillance

Brain Tumor in Deer

Exotic Animal Imports and Public Health

Loss of Two SCWDS Friends

A Note On The Unprecedented Strandings Of 56 Deep-Diving Whales Along The Uk And Irish Coast, Sarah J. Dolman, Eunice Pinn, Robert J. Reid, Jason P. Barley, Rob Deaville, Paul D. Jepson, Mick O’Connell, Simon Berrow, Rod S. Penrose, Peter T. Stevick, Susannah Calderan, Kevin P. Robinson, Robert L. Brownell Jr., Mark P. Simmonds

United States Department of Commerce: Staff Publications

In the first seven months of 2008, eighteen Cuvier’s beaked whales (Ziphius cavirostris), four Sowerby’s beaked whales (Mesoplodon bidens), five unidentified beaked whales and twenty-nine long-finned pilot whales (Globicephala melas) were reported stranded in the UK and Ireland. Decomposition of those animals investigated puts the predicted time of death at mid-January. Concerns that an unusual mortality event had taken place prompted further investigations. Most carcasses were too decomposed for necropsy. A summary of findings is presented here. Although the initial stranding of five Cuvier’s beaked whales in Scotland shared some similarities with atypical mass …

Synthesis Of Novel Borinic Acids As Potential Hiv-1 Protease Inhibitors, Donald Ray Clayton Iii

Undergraduate Honors Theses

Implementation of antiretroviral treatment has drastically increased both the survival and quality of life of HIV/AIDS patients. While there has been significant success using these life saving drugs, several problems have arisen during their use. Among these major setbacks included the rising incidences of resistance, low bioavailability, and an unacceptable level of toxicity. Consequently, there is an urgent need for the development and production of new inhibitory compounds with increased resistance profiles, higher bioavailability, and decreased toxicity. Recent studies have demonstrated that boron modified peptides are effective inhibitors of aspartic proteases. Furthermore, these boronated compounds have exhibited dual-inhibition along with …

Building The Pandemic Influenza Digital Archive (Pida) At The National Institutes Of Health Library, James King

Sci-Tech News

A paper delivered at the Future of Science Librarianship Contributed Papers session at the 2010 Annual Conference of the Special Libraries Association.

Revelations Of Adaptive Technology Hiding In Your Operating System, Kathleen P. King

Department of Leadership, Policy, and Lifelong Learning

Pre-publication version of a chapter about the assistive technology tools and resources available for free in Windows OS and Mac OS. Introducing higher education faculty to free resources, features and programs which they can recommend to their students or perhaps use for themselves (for instance for fading eyesight or hearing). In addition, the chapter briefly shares strategies and examples of how they might be used.

The book will have an entire chapter dedicated to assistive technology as well. This is a popularized assistive technology chapter for generalist, NON special education, faculty to become acquainted with readily available and free resources. …

Epizootiologic Survey Of Mycobacterium Bovis In Wildlife And Farm Environments In Northern Michigan, Gary W. Witmer, Amanda E. Fine, James Gionfriddo, Michael Pipas, Kirk Shively, Kim Piccolo, Patrick Burke

United States Department of Agriculture Wildlife Services: Staff Publications

Bovine tuberculosis (bovine TB), caused by Mycobacterium bovis, has reemerged in northern Michigan, USA, with detections in white-tailed deer (Odocoileus virginianus) in 1994 and in cattle in 1998. Since then, significant efforts have been directed toward reducing deer densities in the area in the hopes of reducing the bovine TB prevalence rate in deer and eliminating spillover of the disease into cattle. Despite the success of the efforts to reduce deer densities, additional cattle herds have become infected. Other mammals can be infected with M. bovis, and some carnivores and omnivores had been found to be infected with …

Comparison Of Endocrine Response To Stress Between Captive-Raised And Wild-Caught Bighorn Sheep, Sarah Coburn, Mo Salman, Jack Rhyan, Thomas Keefe, Matthew Mccollum, Keith Aune, Terry Spraker, Lowell Miller

United States Department of Agriculture Wildlife Services: Staff Publications

Stress hormones in Rocky Mountain bighorn sheep (Ovis canadensis canadensis), produced in response to environmental changes, road development, or high population density, may impact their immune systems to a threshold level that predisposes them to periodic, large-scale mortality. We compared the stress response to a novel environmental situation and repeated handling between bighorn sheep born and raised in captivity (CR) and bighorn sheep born in the wild (WC) and brought into captivity. We measured plasma epinephrine, norepinephrine, cortisol, and fecal glucocorticoid metabolites (FGM). Three weeks after each group’s arrival we used a one-time drop-net event to elicit an …

I. Microwave-Influenced Diversity-Oriented Synthesis Of Biologically Relevant Small & Natural-Product-Like Molecules Via Multicomponent Coupling Reactions Ii. Synthetic Studies Toward The Total Synthesis Of The Repeating Tetrasaccharide Unit Of Zwitterionic Polysaccharide Ps A1, Soumava Santra

Wayne State University Dissertations

Microwave-influenced diversity-oriented synthesis of biologically relevant small and natural-product-like molecules via multicomponent coupling reactions (MCCRs) have been investigated. Cheap, readily available starting materials in conjunction of microwave irradiation and employment of environmentally benign solvent (e.g. water) provided a common platform that allowed to access a wide array of structurally and skeletally diverse molecules. The investigation allowed us to establish a new paradigm of diversity-activity relationships (DARs) by tuning reacting components of the MCCRs and proved that in contrary to the conventional use of microwave as a rate accelerating tool, it can be used to influence reactivity of molecules. The method …

Ectoparasites Of Bats In Mongolia (Ischnopsyllidae, Nycteribiidae, Cimicidae And Spinturnicidae), Ingo Sceffler, Dietrich Dolch, Jargalsaikhan Ariunbold, Nyamsuren Batsajchan, Andreas Abraham, Klaus Thiele

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

For large parts of the world, the knowledge of bat ectoparasites is still scanty. Regarding Mongolia, only few studies exist to date. This paper analyzes results from extensive captures between 2005-2008, carried out in different sites of Mongolia. Discussed ectoparasites include bat fleas, (Ischnopsyllidae), bat flies (Nycteribiidae), and bat bugs (Cimicidae) and spinturnicid mites (Spinturnicidae). A number of species found in this study were new records for Mongolia, and for many species additional sites were reported. For some bat species, the spectrum and frequency of larger ectoparasites could be determined for the first time.

Current State Of Ixodidae Research In Mongolia, Daniel Kiefer, K. Pfister, D. Tserennorov, G. Bolormaa, D. Otgonbaatar, Ravčigijn Samjaa, E. G. Burmeister, Mathias S. Kiefer

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

Our research presents the Ixodidae-fauna in Mongolia. The current taxonomic state in Mongolia shows 19 Ixodidae taxa extracted in 308 locations from 115 bird and mammal species. In 1980, the species Ixodes persulcatus SCHULZE, 1930 and Ixodes berlesei Birula, 1895 were detected in Inget Tolgoi and Ixodes laguri OLENEV, 1929 on Meriones unguiculatus 10 km southeast of Ulaanbaatar for the first time. In 2000 the species Haemaphysalis concinna Koch, 1844 was detected in the Selenge-river area and Argas (Argas) vulgaris FILIPPOVA, 1961 was detected in the Gobi area. From the collection of M. and A. STUBBE 1 N …

Distribution Of Fleas (Siphonaptera) In Bird-Nests, Bird Siphonaptera On Mammalia And The Medical Importance Of Interspecific Flea Transmission In Mongolia, Daniel Kiefer, K. Pfister, D. Tserennorov, D. Otgonbaatar, Ravčigijn Samjaa, D. Sumjaa, E. G. Burmeister, Mathias S. Kiefer

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

Starting in the 1960s of the last century a huge amount of material from mammals and birds was collected in Mongolia. The according results were published in Erforschung biologischer Ressourcen der Mongolei, Volume 1-10, and represented on conferences in Halle, Moscow, Irkutsk, Ulaanbaatar, Bratislava and the Entomological Review St. Petersburg.

A big part of the collected material consisted of ectoparasites analyzed by experts from Mongolia, Germany, England, Russia, Poland, Czech Republic, and Slovakia resulting in newly described species along with zoogeographical and ecological profiles.

During the years 1974-2007 material from 321 nests of 38 bird taxa were obtained. 157 …

The Sir Epidemiology Model In Predicting Herd Immunity, Joanna Nicho

Undergraduate Journal of Mathematical Modeling: One + Two

The Simple Epidemic Model uses three states to describe the spread of an infection: the susceptible (S), the infected (I), and the recovered (R). This model follows the trend of an infection over time and can predict whether an infection will spread. Using this model, epidemiologists may calculate the percentage of the population that needs to be vaccinated in order to provide a population immunity from a disease. This study will compare the vaccination percentage required for herd immunity to measles, mumps, and rubella against the current percentage of vaccinated individuals.