Digital Commons Network^™

Basking In Abundance: Distribution And Abundance Of Alabama Map Turtles (Graptemys Pulchra) In The Upper Coosa River, Abigail Wilkins

Theses

The Alabama Map Turtle (Graptemys pulchra) is one of the least studied species of turtle in the United States. Little is known about the species distribution and abundance within the northeastern portion of its range. The aim of this study is to determine the distribution of G. pulchra in the Upper Coosa River drainage as well as estimate population sizes for G. pulchra at 6 sites accessible in the Upper Coosa River Drainage. I used a variety of methods (e.g., rapid assessment surveys, trapping, mark-resight population estimates) to determine the presence and abundance of the species in the Upper …

Combination Of Hdac And Fyn Inhibitors In Synovial Sarcoma, Kyra Parker

Theses

The SS18-SSX fusion protein is an oncogenic driver in synovial sarcoma. At the molecular level, SS18-SSX functions as both an activator and a repressor to coordinate transcription of different genes responsible for tumorigenesis. Here, we identify the proto-oncogene FYN as a new SS18-SSX target gene and examine its relation to synovial sarcoma therapy. FYN is a tyrosine kinase that promotes cancer growth, metastasis and therapeutic resistance, but SS18-SSX appears to negatively regulate FYN expression in synovial sarcoma cells. Using both genetic and histone deacetylase inhibitor (HDACi)-based pharmacologic approaches, we show that suppression of SS18-SSX leads to FYN reactivation. In support …

Life Line Spring 2025, Otterbein Biology And Earth Science Department

Life Line - The Biology Department Newsletter

In this issue:

Greetings and Farewell!; COSI 2024; Ketchup, Culture, and an Unforgettable Conference; Alumna Earns PhD; Tortoises, Butterflies, and Cockroaches, Oh My!; Licking River Roundup 2024; Aquarium Students Explore Coral Restoration in Fiji; The Galapagos Islands: Geology, Ecology, Conservation, and Culture; Dr. Svitana Presents on Otterbein Lake Well Field; Cell Bio Pilots Unique Approach to Learning; Hoggarth to Retire, June 2025; AED is BACK on Campus!; The Greenhouse Gets a Lifeline; Acoustic Rabies Identification (ARID): A Sound-Based Approach to Rabies Testing

Using Camera Stations To Investigate Occupancy Probability And Habitat Associations Of Island Spotted Skunks (Spilogale Gracilis Amphiala) On Santa Rosa And Santa Cruz Islands, Desirae Thomaier

Master's Theses

The California Channel Islands are unique in that two islands (Santa Rosa and Santa Cruz) support two endemic mesocarnivores, the island fox (Urocyon littoralis) and the island spotted skunk (Spilogale gracilis amphiala). Following the near-extinction of island foxes in the early 2000s, island spotted skunk populations increased significantly. Now that foxes have recovered, skunk captures have precipitously declined - possibly due to interspecific competition with foxes who have a similar diet but a larger body size and wider temporal niche. It has been proposed that skunks selectively use canyon bottoms and drainages with high vegetation cover and that these areas …

Comparative Mechanical And Elastic Properties Of The Dorsal And Ventral Tendons In The Peduncle Of Harbor Porpoise (Phocoena Phocoena), Alexa R. Cesari, Jesse K. Placone, Nicole L. Ramo, Michael V. Rosario, Matthew Morris, Danielle S. Adams, Frank E. Fish

Biology Faculty Publications

Cetaceans swim via vertical movements of the tail. The tendons located in the caudal peduncle are attached to the caudal vertebrae to generate propulsive oscillations. Arguments have centered on whether the upstrokes and downstrokes of the tail and propulsive flukes are symmetrical or asymmetrical in time. Previous research from kinematics of swimming animals, muscle architecture and histology has supported both conditions. However, the composition and structure of the tendons suggest a potential mechanism to evaluate this disparity. In this study, the tendons of the caudal peduncle of the harbor porpoise (Phocoena phocoena) – specifically, the extensor caudae medialis …

College Of Natural Sciences Newsletter, Spring 2025, College Of Natural Sciences

College of Natural Sciences Newsletters and Reports

Page 1 Dean's Message from Dr. Sen Subramanian
Page 2 Student Spotlights
Page 3 Kaushik honored, Three-Minute Thesis, & Ice Cores revealed
Page 4 Alumni Spotlight
Page 5 Day of Scholars
Page 6 Cyanide research, Record Research Expenditures, Adhikari awarded Miller Research Award
Page 8 Hanson Receives NSF Grant
Page 9 Snow Lab Research Team
Page 10 Faculty Awards
Page 11 Drone Day
Page 13 Khalaf Awarded Presidential Award

What Do We Know About Insect Responses To Global Change? A Review Of Meta-Analyses On Global Change Drivers, Mayra C. Vidal, Mariana Abarca, Kristi Backe, Anne E. Curé, Deborah L. Finke, Amanda M. Koltz, Alycia C.R. Lackey, J. Christina Mitchell, Rebecca M. Prather, Ellen A.R. Welti, Gina M. Wimp, Shannon M. Murphy

Biological Sciences: Faculty Publications

1. Global change is causing major declines in biodiversity, especially of insects. Scientific interest in global change impacts on insects has increased in recent years, resulting in many different meta-analyses examining questions within this topic.

2. We performed a comprehensive review of meta-analyses examining the effects of global change stressors on insects to identify well-studied questions and gaps in our knowledge and synthesise the responses of insects to those stressors. We identified 75 meta-analyses that fit our scope, accounting for 905 meta-results and spanning 18 global change stressors.

3. Our synthesis identified several global change stressors that are relatively well-studied …

Coyote (Canis Latrans) Macronutrient Consumption And Diet Relative To Seasonality And Urbanization, Katherine C. B. Weiss, Sean C. P. Coogan, Pierre Deviche, Jesse S. Lewis, Savage C. Hess, Jan Schipper, Eric G. Strauss, Beckett Sterner

Biology Faculty Works

Diet selection informs the health, fitness, and behavior of wild predators. Due to assumptions that vertebrate prey contains similar compositions of macronutrients (i.e., protein, carbohydrates, and lipids), whole prey items traditionally define carnivore diets. However, increasing evidence suggests that prey differ in terms of their macronutrient compositions, particularly relative to body size. Furthermore, omnivorous predators, like coyotes (Canis latrans), integrate both prey and nonprey diet items whose macronutrient compositions vary. This is particularly important in urbanized systems, which introduce or alter the distributions of prey (e.g., domestic pets) and nonprey (e.g., ornamental plants) foods in ways that contribute …

From Microplastic Impact To Biodegradation Solutions: Investigating Microplastic Pollution, Microbial Responses, And Efficacy Of Synthetic Microbial Consortia In Plastic Degradation, Rener Sahot De Jesus

Dissertations

Plastics, including microplastics, pose significant environmental threats due to their widespread presence and harmful ecological effects. This dissertation present three distinct, yet interconnected studies. First, a study on microplastic contamination in urban recreational parks was conducted in Al Ain, United Arab Emirates. Results showed that low-density microplastics were present in 87% of soil samples, with spectroscopic analysis identifying synthetic polymers such as polyethylene and polypropylene. Additionally, these microplastics were found to negatively affect soil pH and moisture levels, emphasizing the need for enhanced monitoring and management strategies. Second, the effects of ground microplastics on Photobacterium leiognathi strains, a marine luminous …

Therapeutic Role Of Bioactive Peptides Derived From Hemoglobin, Priya Antony Pereppadan

Dissertations

Bioactive peptides are peptide fragments derived from the proteolytic cleavage or maturation of functional proteins that have shown promising therapeutic potential in addressing major health challenges, including type 2 diabetes, hypertension, and pain management. Diabetes is characterized by high blood glucose levels due to insufficient insulin production or utilization. There are several therapeutic targets for managing diabetes, and one key target is dipeptidyl peptidase IV (DPP IV) due to its role in glucose metabolism. In hypertension, angiotensin-converting enzyme 1 (ACE1) is critical for regulating blood pressure by forming angiotensin II, and its inhibition represents an established treatment strategy. Additionally, the …

Title: An Analysis Of Hmbs Variants Associated With Acute Intermittent Porphyria, Elaine Vanterpool, Jason Kahari

Student Posters

HMBS, also known as hydroxymethylbilane synthase, is a gene that is responsible for providing instructions for making the enzyme named hydroxymethylbilane synthase. This enzyme is involved in the creation of a molecule called heme. Heme plays an important part in all of the body’s vital organs. It is important to all organs however, it is most prevalent in the blood, bone marrow, and liver. Heme is essential in making iron-containing proteins called hemeproteins. To produce heme, an eight-step process must occur that requires 8 different enzymes. “Hydroxymethylbilane synthase is responsible for the third step in this process, which combines four …

Culex Quinquefasciatus Mosquitoes In Abu Dhabi Emirate: Assessing Deltamethrin Insecticide Resistance And Associated Microbial Communities, Amgdsayed Ismat Ali

Theses

Culex quinquefasciatus is a major vector of West Nile virus, lymphatic filariasis, and arboviruses, which represent public health risk. Widespread application of pyrethroid insecticides has increased resistance in mosquito populations threatening the effectiveness of control strategies. This study aims to (1) assess deltamethrin resistance in Culex quinquefasciatus populations across the Abu Dhabi Emirate, (2) characterize the microbial communities associated with these mosquitoes.

Mosquitoes from sites around the Abu Dhabi Emirate were collected and genomic DNA extracted for molecular analysis. PCR and allele-specific primers were used to detect knockdown resistance (kdr) mutations in the sodium channel gene, classifying mosquitoes as susceptible …

The Prillwitz Mammoth: Taxonomy, Sex, Age, & Delayed Skeletal Maturation Of A Geologically Young Mammoth, Anna Rybachek

Honors Theses

The Prillwitz mammoth, a nearly complete mammoth skeleton found in Southwest Michigan in 1962, is one of the geologically youngest mammoths from North America (AMS C-14 date: 11,300 ± 100 BP). Bones are well preserved; some long bones show post-mortem flaking, scratches, or grooves of unknown origin. All long-bone epiphyses remain unfused except the distal humerus, suggesting it was < 28 years old at death. In contrast, the skull and mandible preserve M3s and m3s, respectively, that are in mid-wear, indicating an Asian Elephant Year dental age of ~45-50 years. Long bone size and inferred shoulder height are consistent with the size of a large woolly mammoth (Mammuthus primigenius) or small to mid-sized Columbian mammoth (Mammuthus columbi), but dental evidence is most consistent with M. columbi.

Pelvic dimensions suggest it is a male. The ≥ 17-year mismatch between age inferred from tooth progression and wear (~45 Asian Elephant Years) and age inferred from epiphyseal fusion (< ~28 Asian EY if male) may indicate either substantially accelerated dental progression or delayed skeletal maturation for this mammoth; we deem the latter more likely. Based on modern analogs, delayed maturation could have been due to severe malnutrition, hormonal imbalance, illness, or genetic factors. Given the geologically young age of the Prillwitz mammoth (likely near the time of mammoth extinction), we speculate that delayed skeletal maturation may have been attributed to environmental stressors near the end of the Pleistocene. Further work is warranted on very late mammoths.

The Effects Of Exposure To Ultraviolet Light On The Activity Of Catalase In Internal And External Tissues Of The Sea Urchin Lytechinus Variegatus, Ellerie C. Heinzmann

Undergraduate Theses

Exposure to ultraviolet radiation (UVR) can have negative impacts on organisms that are exposed to it. The sea urchin Lytechinus variegatus is an organism that resides in shallow waters which can experience exposure to UVR. One negative impact that can occur from UVR is an increase in production of reactive oxygen species (ROS) due to cell stress. In this experiment, two treatments were performed on L. variegatus in the adult state. The first included an exposure to UV-B radiation for 8 hours, and the second was an 8-hour UV-B exposure with temperatures at 30 °C to replicate environmental conditions in …

Refinement Of Megakaryocyte Lineage Commitment In Hematopoietic Stem And Progenitor Cells During Postnatal And Adult Hematopoiesis, Ryan Michael Mack

Dissertations

Mammalian hematopoiesis ensures the continuous production of specialized blood cells, yet the mechanisms that govern megakaryocyte/erythroid (MK/E) bifurcation remain incompletely understood. While HSPCs sustain all blood lineages, how transient waves of progenitors arise and adapt from fetal to adult stages is less clear. This gap in knowledge limits our capacity to precisely manipulate platelet and red blood cell outputs in both developmental and therapeutic contexts. Using refined gating strategies and various bulk- and single-cell transcriptomics, we dissected the traditional “common myeloid progenitor” and Multipotent Progenitor (MPP) compartment into multiple functionally distinct subsets (C1, C2, C3). Within C1, an ESAM⁺ fraction …

A Study To Identify The Causal Rare Genetic Variants In Primary Open And Closed Angle Glaucoma, Pseudoexfoliation Syndrome, And Associated Glaucoma, Suganya K

Theses and Dissertations

BACKGROUND: Glaucoma is the second most common cause of blindness globally typically diagnosed with a triad of clinical symptoms of increased intraocular pressure (IOP) with associated optic disc, optic nerve head (ONH) changes, and visual field defects. Genetic and environmental factors are some of the strong aetiology factors for glaucoma and identification of these factors has a potential implication in the management of the disease and its outcome. There is a paradigm shift towards understanding the genetics of glaucoma, wherein the variants in the nuclear, mitochondrial genome and other regulatory regions are being identified as contributing risk factors.

METHODOLOGY AND …

Barriers And Breakthroughs In The Evolution Of Aggregative Multicellularity, Israt Jahan

Arts & Sciences Graduate Student Theses and Dissertations

The evolution of multicellular organization represents a key innovation in the history of life, yet fundamental questions remain about the evolutionary mechanisms that allowed some lineages to achieve remarkable complexity, while constrained others in their elaboration. The widely accepted single-cell bottleneck model provides a compelling explanation for the success of clonal multicellularity by reducing internal conflict and facilitating developmental integration. However, this perspective does not fully account for the stability and repeated evolution of aggregative multicellularity, where cooperation emerges among previously independent cells that may not be genetic relatives. Aggregative multicellularity demonstrates that the evolution of multicellularity is not a …

Barriers And Breakthroughs In The Evolution Of Aggregative Multicellularity, Israt Jahan

Arts & Sciences Graduate Student Theses and Dissertations

The evolution of multicellular organization represents a key innovation in the history of life, yet fundamental questions remain about the evolutionary mechanisms that allowed some lineages to achieve remarkable complexity, while constrained others in their elaboration. The widely accepted single-cell bottleneck model provides a compelling explanation for the success of clonal multicellularity by reducing internal conflict and facilitating developmental integration. However, this perspective does not fully account for the stability and repeated evolution of aggregative multicellularity, where cooperation emerges among previously independent cells that may not be genetic relatives. Aggregative multicellularity demonstrates that the evolution of multicellularity is not a …

Murine Studies On Ketogenic Modulation Of Metabolism And Epigenetics In Olfaction- Based Learning, Lps Inflammatory Response, And Sex Dimorphisms In Dietary Response, Sara E. H. Moss

USF Tampa Graduate Theses and Dissertations

Ketogenic diets are well-established therapeutic interventions for epilepsy, with documented neuroprotective effects arising from their metabolic, antioxidant and anti-inflammatory properties. Beyond epilepsy, ketogenic therapies are under investigation for various conditions including Alzheimer disease, cancer, diabetes, and cardiovascular disease. These diets suppress insulin levels and shift metabolic physiology toward fat and ketone body metabolism. This elevates circulating levels of ketone bodies, namely beta-hydroxybutyrate, acetoacetate, and acetone, which serve as both energy substrates and signaling molecules. The state of elevated ketone bodies (ketosis) can be achieved with various formulations of a ketogenic diet as well as exogenous ketone supplementation, though the signaling …

Per- And Polyfluoroalkyl Substance (Pfas) Degradation In Water And Soil Using Cold Atmospheric Plasma (Cap): A Review, Victor Somtochukwu Mbanugo, Boluwatife Stephen Ojo, Ta Chun Lin, Yue-Wern Huang, Marek Locmelis, Daoru Han

Biological Sciences Faculty Research & Creative Works

Per- and polyfluoroalkyl substances (PFASs) are persistent organic chemicals found in numerous industrial applications and everyday products. The excessive amounts of PFASs in water and soil, together with their link to severe health issues, have prompted substantial public concerns, making their removal from the environment a necessity. Existing degradation techniques are frequently lacking due to their low efficiency, cost-effectiveness, and potential for secondary contamination. Cold Atmospheric Plasma (CAP) technology has emerged as a promising alternative, utilizing energized reactive species to break down PFASs under ambient conditions. Therefore, this review examines the efficacy and effectiveness of CAP in degrading PFASs by …

Defining B Cell Responses To Emerging Viral Pathogens, Wafaa Al Soussi

Arts & Sciences Graduate Student Theses and Dissertations

The primary series of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) vaccines greatly reduced the burden of the coronavirus disease 2019 (COVID-19) pandemic and saved millions of lives. However, waning levels of circulating neutralizing antibodies and the continuous emergence of SARS-CoV-2 variants with increasing numbers of mutations in the spike (S) protein have decreased vaccine effectiveness and led to a recommendation for booster immunizations. In addition, new vaccines based on circulating variants have been developed to enhance the ability of induced antibodies to combat such variants. However, a critical unanswered question was how prior exposure to the ancestral SARS-CoV-2 strain …

Defining B Cell Responses To Emerging Viral Pathogens, Wafaa Al Soussi

Arts & Sciences Graduate Student Theses and Dissertations

The primary series of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) vaccines greatly reduced the burden of the coronavirus disease 2019 (COVID-19) pandemic and saved millions of lives. However, waning levels of circulating neutralizing antibodies and the continuous emergence of SARS-CoV-2 variants with increasing numbers of mutations in the spike (S) protein have decreased vaccine effectiveness and led to a recommendation for booster immunizations. In addition, new vaccines based on circulating variants have been developed to enhance the ability of induced antibodies to combat such variants. However, a critical unanswered question was how prior exposure to the ancestral SARS-CoV-2 strain …

The Design, Construction, And Testing Of Mrna Vaccine Against Equine Herpes Virus, Bhawana Devkota

LSU Master's Theses

Equine Herpesvirus-1 (EHV 1) is a worldwide significant pathogen that causes respiratory illness, abortion, and neurological disorders in equine. Current vaccines, including live attenuated, inactivated, and subunit platforms, do not prevent viral latency, mucosal shedding, or cross-strain immunity, requiring alternative approaches. To address these gaps, this project explores the design, synthesis, and in vitro testing of an mRNA vaccine targeting immunogenic EHV 1 glycoprotein (gB, gC, gD, gG, and gM). Epitopes were computationally predicted using the Immune Epitope Database (IEDB), codon-optimized for Bos taurus, and cloned into pUCIDT vectors using SP6/T7 promoters. In vitro transcription (IVT) used nucleotide modifications …

Fossil Leaf Cuticle: Best Practices For Preparation And Paleo-Co2 Analysis, Xiaoqing Zhang, Dana L. Royer, Carina E. Colombi, Juan Martin Drovandi, Jennifer C. Mcelwain, Gaëtan Guignard, Qin Leng, Barry H. Lomax, Nathan D. Sheldon, Rebekah A. Stein, Garland R. Upchurch, Yongdong Wang, Hong Yang, Richard S. Barclay, Ying Cui, Wolfram Kürschner, Joseph N. Milligan, Isabel Montañez, Jon D. Richey, Tammo Reichgelt, Gongle Shi, Selena Y. Smith, Margret Steinthorsdottir

Biological and Biomedical Sciences Department Faculty Journal Articles

Leaf cuticle is the waxy envelope that protects leaves from desiccation, UV damage, and abrasion. The cuticle encodes information about a plant's chemistry and leaf epidermal and stomatal cell morphology. Fossil leaf cuticle has been used to determine taxonomic affinities for almost two centuries and recognized in recent decades for its value in reconstructing paleoenvironments and paleoclimates, especially atmospheric CO2. Fossil leaf cuticle preparation techniques are typically reported as single workflows tied to individual studies, starting with finding fossils in the field through the steps of preparing cuticle for chemical and morphological analysis, including decisions about type of microscopy and …

Regeneration In Planarians Modifies Behavioral Switching, N. S. Tellakula, Eva-Maria S. Collins, W. B. Kristan Jr.

Biology Faculty Works

The planarian Dugesia japonica responds differently to localized stimuli: anterior regions turn, middle regions elongate, and posterior regions contract. If cut into several pieces, each piece immediately produces the same three responses. Over several days, each piece regenerates all transected body parts. This study tested how the pieces coordinate behavioral responses during regeneration. We first determined the locations of the turning/elongation and elongation/contraction behavioral switches. Immediately, all transections moved both switching sites away from the cut sites so that the worm pieces produced the same three responses as intact worms. During regeneration, the sites of behavioral switching moved progressively closer …

Environmental Conditions Explain Variability In Concentrations Of Nutrients But Not Emerging Contaminants, Megan L. Fork, Jerker Fick, Alexander J. Reisinger, Peter M. Groffman, Emma J. Rosi

Biology Faculty Publications

Aquatic ecosystems are subjected to many chemical stressors, including nutrients and emerging contaminants like pharmaceuticals. While pharmaceutical concentrations in streams and rivers are often below the thresholds for acute toxicity, they nonetheless disrupt ecology through changes to organisms’ physiology, metabolism, and behavior. However, analyzing samples for the wide range of manufactured pharmaceuticals is often prohibitively expensive for many monitoring efforts. As such, the ability to predict pharmaceutical concentrations over space and time using easier-to-monitor water quality parameters would expand our understanding of the scope and consequences of pharmaceutical contamination in aquatic ecosystems. We applied random forest models to data from …

Variation In Response To Phosphorus Among Sweetpotato (Ipomoea Batatas L.) Cultivars, Jeffrey Cole Denis Gregorie

LSU Doctoral Dissertations

Phosphorus (P) is essential for plant growth and is often a major limiting nutrient in agriculture. In sweetpotato (Ipomoea batatas), studies on the role of P on storage root yield have been limited because of the lack of response and inconsistent results across cultivars and years. Growing evidence shows that current phosphate (Pi) fertilizer rates can be reduced while maintaining productivity. Newly published molecular evidence shows differential expression of phosphate starvation response genes among sweetpotato cultivars, further supporting the hypothesis of cultivar-specific Pi sensitivity. The research herein sought to characterize root system architecture and yield response to Pi …

Atlantic Sharpnose (Rhizoprionodon Terraenovae) Jaw, Rileigh Gonzalez, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

First Record Of Nesting Ecology And Tumor-Forming Disease In Endangered Green Turtles (Chelonia Mydas) On Taiping Island, Taiwan, Tsung-Hsien Li, Po-Yu Wu, Ming-An Tsai

The Thai Journal of Veterinary Medicine

Taiping Island is an important sea turtle nesting site in Taiwan. However, information on the nesting ecology on Taiping Island is still limited. The present study was conducted between 26 April and 3 June 2023 with the objective of collecting primary data on the sea turtle species that nest on the island. A total of 20 individual nesting green turtles were identified. No other sea turtle species were recorded nesting during this period. Five percent of nesting sea turtles had external tumors. The mean curved carapace length of all nesting female turtles was 98.2 cm. A total of 28 clutches …

Juvenile And Adult Survival Estimates Of American Kestrels Throughout The Full Annual Cycle In Eastern North America, Mercy Melo, Joseph M. Kolowski, Rebecca A. Mccabe, John A. Smallwood, Allison Cornell, David King, Jean François Therrien

Department of Biology Faculty Scholarship and Creative Works

Measuring survival in a declining species provides the foundation for continued research, demographic modeling, and informed conservation strategies. Although American Kestrel (Falco sparverius) populations have continued to decline since the 1970s, little is known about their survival throughout the full annual cycle, making it difficult to identify factors responsible for these declines. We used radio telemetry to provide the first known-fate estimates of adult kestrel survival, and we present data across breeding stages, and between resident and migratory wintering individuals, in addition to separately modeling fledgling survival. Temporal and spatial stratification of study sites allowed for the investigation of different …