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Population Genetic Structure And Demographic History Of Opsaridium Microcephulum Along Lake Nyasa, Alex Nehemia, Alinanuswe J. Mwakalesi

Tanzania Journal of Science

The Sanjika, Opsaridium microcephalum is among the fish species that serve as a major source of proteins and income to people along Lake Nyasa. However, the information on its genetic diversity and structure particularly in the Tanzania part of the Lake is limited. Therefore, the assessment of the genetic diversity and structure of O.microcephalum along the Lake Nyasa part of Tanzania was conducted in the current study using a fragment of the mitochondrial COI gene from 92 individuals of O. microcephalum. The findings showed that an average haplotype diversity and average nucleotide diversity were 0.8065 ± 0.0314 and 0.002380 ± …

Potential Of Endophytic Fungal Isolates In Improving Productivity And Postharvest Marketable Fruit Qualities Of Tomato, Gabriel Michael, Emmanuel M. Sangu

Tanzania Journal of Science

In Tanzania, low tomato (Solanum lycopersicum) yield and postharvest marketable fruit qualities remain significant limitations for tomato grower’s profit. Seven endophytic fungal isolates from pyrethrum and Lemongrass leaf and or flowers were evaluated to promote tomato productivity and fruit qualities. The isolates were inoculated by priming the seeds in spore suspension, and the variations in the number of germinated seeds, seedling vigour, yield and fruit qualities were compared across the treatments. It was observed that only three isolates induced more than 50% seed germination. Epf1 and Epl1 isolates showed significant promotion of seed germination (F 0.05 (pdf, 23) = 8.121 …

Bioethics Of Human Cloning: Are We Playing God?, Caleb Smith, Mary Katherine Flage

NEXUS: The Liberty Journal of Interdisciplinary Studies

No abstract provided.

How Development And Survival Combine To Determine The Thermal Sensitivity Of Insects, Mariana Abarca, Anna L. Parker, Elise A. Larsen, James Umbanhowar, Chandra Earl, Robert Guralnick, Joel Kingsolver, Leslie Ries

Biological Sciences: Faculty Publications

Thermal performance curves (TPCs) depict variation in vital rates in response to temperature and have been an important tool to understand ecological and evolutionary constraints on the thermal sensitivity of ectotherms. TPCs allow for the calculation of indicators of thermal tolerance, such as minimum, optimum, and maximum temperatures that allow for a given metabolic function. However, these indicators are computed using only responses from surviving individuals, which can lead to underestimation of deleterious effects of thermal stress, particularly at high temperatures. Here, we advocate for an integrative frame- work for assessing thermal sensitivity, which combines both vital rates and survival …

Dynamics Of Post-Mating Responses In Drosophila, Gagneet Kaur

Theses - ALL

Mating induces crucial changes in Drosophila females, influencing vital aspects of behavior and physiology essential for reproductive success. These changes primarily result from gene expression shifts in the female reproductive tract. DNA sequencing and bioinformatics advances have deepened our understanding of postmating responses in Drosophila at the transcriptional level. However, the majority of these studies are confined to D. melanogaster, lack tissue-specific investigations, and are extensively focused on the composition of the ejaculate and the role of male reproductive proteins transferred during mating. This study delves into the dynamic lower reproductive tract of D. virilis subgroup species, exploring the postmating …

The Role Of Stressors In The Behavioral Responses Of Lesser Sirens To Chemical Cues, Mackenzie Hanna Nichols

Student Theses and Dissertations

Organisms must make choices to improve their survival, and often perform behaviors in response to stimuli in the environment. I examined behavioral responses under conditions of stress in a species of fully aquatic salamander, Western Lesser Sirens (Siren intermedia nettingi Goin 1942). First, I presented individuals with chemical cues from a variety of known prey items to determine a potential prey preference. Sirens did not exhibit a preference by prey type. I then exposed individuals to chemical cues from prey, predator, and insecticide sources and evaluated behavioral responses, while also administering a nonlethal physical injury to a subset of subjects …

The Effect Of Rosmarinus Officinalis And Trachyspermum Ammi On The Growth Of Eruca Vesicaria Ssp. Sativa In Hydroponics Versus Natural Soil, Emna Guedhami

Journal of the South Carolina Academy of Science

Despite technology being developed to address the food shortages due to increasing population, current methods of cultivating crops are not sufficient. Scientists are addressing this issue by researching biostimulants that stimulate plant growth without harming the environment and researching the use of hydroponics, a way of growing crops without soil. The purpose of this study was to combine the use of essential oils and growing methods (hydroponics and soil) and measure its impact on the height of E. sativa. It was hypothesized that if E. sativa was grown hydroponically with added Rosmarinus officinalis (REO) and Trachyspermum ammi (TEO) over time, …

The Effect Of Crystalline Phase On The Toxicity Of Tio2 Nanoparticles To Chlorella, Jisoo Lee

Journal of the South Carolina Academy of Science

Nanoparticles (NPs), or particles with dimensions that go below 100 nanometers, can be released into the environment in various ways, such as through cosmetic products like sunscreen. Titanium dioxide (TiO₂) is a commonly used nanoparticle in sunscreen, and it has the potential to be harmful to various aquatic organisms including algae. The purpose of this study was to examine how the crystalline phase of TiO₂ NPs (brookite or rutile) influenced their toxicity to the microalgae species Chlorella. It was hypothesized that brookite phase TiO₂ NPs would inhibit the growth of Chlorella more than rutile phase TiO …

Parental Environnement Influences Offspring Gene Expression In The Olympia Oyster, Ostrea Lurida., Mark S. Yeats

LSU Master's Theses

The Olympia Oyster is the only native oyster species on the Pacific coast of North America. Seasonality in water temperatures across this threatened species’ broad and fragmented range has been linked to its development, reproductive timing, reproductive activity, growth, and survival rates. Recent evidence suggests parental environments can have carry-over effects on larval growth and respiration rates in response to temperature. In this study, we utilized transcriptomic methods to identify the underlying mechanisms of this cross-generation plasticity. Sequence libraries of adult ctenidia tissue and pooled larval replicates were extracted and spawned from hatchery raised oysters of the same parentage immediately …

The Cetacean Sanctuary: A Sea Of Unknowns, Jason N. Bruck

Faculty Publications

Housing cetaceans in netted sea pens is not new and is common for many accredited managed- care facilities. Hence, the distinction between sanctuary and sea pen is more about the philosophies of those who run these sanctuary facilities, the effects of these philosophies on the animals’ welfare, and how proponents of these sanctuaries fund the care of these animals. Here, I consider what plans exist for cetacean sanctuaries and discuss the caveats and challenges associated with this form of activist-managed captivity. One goal for stakeholders should be to disregard the emotional connotations of the word “sanctuary” …

Analysis On Development Status And Characteristics Of Non-Governmental Bio-Safety And Bio-Security Think Tanks In The United States, Wenbing Ma, Qiang Song, Lei Wang

Bulletin of Chinese Academy of Sciences (Chinese Version)

At present, the complexity of bio-safety governance is becoming increasingly prominent, and complex issues such as security and development in the bio-economy, preparedness and response to infectious disease pandemics, the interweaving and integration of bio-security and other security factors, and the integration of scientific and technological factors and security factors urgently require think tanks to conduct systematic, comprehensive and forward-looking assessments and provide professional solutions. Rooted in the relatively mature experience in the construction of think tanks in the United States, a number of bio-safety and bio-security think tanks with greater influence have been developed, which have acted as an …

Genome-Wide Profiling Of Novel Conserved Zea Mays Micrornas Along With Their Key Biological, Molecular And Cellular Targets And Validation Using An Rt-Pcr Platform, Abdul Baqi, Sami Ullah, Muhammad Ayub, Muhammad Zafar Saleem, Ghulam Mustafa Khan, Asad Ullah

Karbala International Journal of Modern Science

MicroRNAs (miRNAs), which are typically non-coding RNAs that start off as endogenous molecules and regulate post-transcriptional levels of gene expression by mRNA degradation or translational repression. They are 18–26 nucleotides long, evolutionarily conserved and essential for predicting novel miRNAs in a variety of plants. Maize (Zea mays) is a significant food and forage crop in the globe today. In the present study, many maize miRNAs have been found to be associated with both plant development and responses to stress. In this study, 66 unique conserved maize miRNAs from 65 different miRNA families were predicted using several genomics-based methods …

Attitudes Of South-Central Kentucky Residents Towards Coyotes And Their Management, Andrew T. Mcqueen, Stephen Sumithran Phd

Posters-at-the-Capitol

The existence of the coyote in the eastern U.S. is a recent development and the public’s perception of coyotes has been widely studied in urban areas. However, perceptions in rural areas, especially rural Appalachia, have been largely unstudied. It is necessary for wildlife managers to understand the public’s perceptions of coyotes and coyote management when creating management plans. We conducted a public survey in South-central Kentucky to determine perceptions toward coyotes and coyote management methods. The survey contained questions about demographics (age, gender, county of residence, landownership, etc.), perceptions (fears, opinions), knowledge (true/false questions), and preferred management practices (hunting, trapping, …

Badger Ecology, Bovine Tuberculosis, And Population Management: Lessons From The Island Of Ireland, Andrew W. Byrne, Adrian Allen, Simone Ciuti, Eamonn Gormley, David J. Kelly, Nikki J. Marks, Nicola M. Marples, Fraser Menzies, Ian Montgomery, Chris Newman, Maria O’Hagan, Neil Reid, David M. Scantlebury, Peter Stuart, Ming-Shan Tsai

Publications

The European badger, Meles meles, is an important wildlife host for Mycobacterium bovis and contributes to the epidemiology of bovine tuberculosis (bTB) in cattle in several countries. The control of zoonotic diseases, such as bTB, is a central component of global One-Health strategies. Such strategies are complicated by human–wildlife conflicts, particularly where wildlife reservoirs are legally protected. The contrasting objectives of disease management and wildlife conservation, therefore, can require significant investment in research to support evidence-based policies. In Britain and Ireland, for example, badgers are a legally protected species but are also subject to lethal control and vaccination for …

Kinase Inhibitor Pulldown Assay (Kip) For Clinical Proteomics, Alexander B Saltzman, Doug W Chan, Matthew V Holt, Junkai Wang, Eric J Jaehnig, Meenakshi Anurag, Purba Singh, Anna Malovannaya, Beom-Jun Kim, Matthew J Ellis

Faculty, Staff and Students Publications

Protein kinases are frequently dysregulated and/or mutated in cancer and represent essential targets for therapy. Accurate quantification is essential. For breast cancer treatment, the identification and quantification of the protein kinase ERBB2 is critical for therapeutic decisions. While immunohistochemistry (IHC) is the current clinical diagnostic approach, it is only semiquantitative. Mass spectrometry-based proteomics offers quantitative assays that, unlike IHC, can be used to accurately evaluate hundreds of kinases simultaneously. The enrichment of less abundant kinase targets for quantification, along with depletion of interfering proteins, improves sensitivity and thus promotes more effective downstream analyses. Multiple kinase inhibitors were therefore deployed as …

Trade-Offs In Rooting Strategy Dimensions Along An Edaphic Gradient In A Grassland Ecosystem, Yuguo Yang, Sabrina E. Russo

School of Biological Sciences: Faculty Publications

1. Roots are essential to the diversity and functioning of plant communities, but trade-offs in rooting strategies are still poorly understood.
2. We evaluated existing frameworks of rooting strategy trade-offs and tested their underlying assumptions, guided by the hypothesis that community-level rooting strategies are best described by a combination of variation in organ-level traits, plant-level root:shoot allocation and symbiosis-level mycorrhizal dependency. We tested this hypothesis using data on plant community structure, above-and below-ground biomass, eight root traits including mycorrhizal colonisation and soil properties from an edaphic gradient driven by elevation and water availability in sandhills prairie, Nebraska, USA.
3. We found multidimensional trade-offs …

Treatment Of Oil Refinery Wastewater Polluted By Heavy Metal Ions Via Adsorption Technique Using Non-Valuable Media: Cadmium Ions And Buckthorn Leaves As A Study Case, Salem Jawad Alhamd, Mohammed Nsaif Abbas, Mehrdad Manteghian, Thekra Atta Ibrahim, Karar Dawood Salman Jarmondi

Karbala International Journal of Modern Science

This study focuses on the removal of cadmium ions generated by oil refinery wastewater, employing an agricultural by-product. Buckthorn leaves, sourced from Baghdad and Diyala provinces, underwent preparation, including washing, drying, crushing, and sieving before being utilized in experiments. Batch experiments were conducted using simulated solutions to assess the impact of six key adsorption design parameters: pH, cadmium concentration, agitation speed, contact time, adsorbent dosage, and temperature. The highest adsorption efficiency, reaching 94.4367%, was directly correlated with contact time, adsorbent dosage, pH value, and agitation speed, and inversely related to other variables. Morphological studies on the treated adsorbent, indicated structural …

Turtle Species And Ecology Drive Carapace Microbiome Diversity In Three Seasonally Interconnected Wetland Habitats, Matthew Parks, Jun Sheng Lee, Kassandra Camua, Ethan Hollender

Biological Sciences Faculty Publications and Presentations

Different species of freshwater turtles exhibit primary behaviours ranging from aerial basking to benthic bottom-walking, cycle between wet and dry conditions at different time intervals, and undertake short-distance overland movements between aquatic habitats. These behaviours in turn may impact the accumulation of microbes on external shell surfaces of turtles and provide novel niches for differentiation of microbial communities. We assessed microbial diversity using 16S and 18S rRNA metabarcoding on carapace surfaces of six species of freshwater turtles residing in three adjacent and seasonally interconnected wetland habitats in southeast Oklahoma (United States). Communities were highly diverse, with nearly 4200 prokaryotic and …

Chemical Catalysis Guides Structural Identification For The Major In Vivo Metabolite Of The Bet Inhibitor Jq1, Secondra Holmes, Prashi Jain, Kenneth Guzman Rodriguez, Jade Williams, Zhifeng Yu, Christian Cerda-Smith, Errol L G Samuel, James Campbell, John Michael Hakenjos, Diana Monsivais, Feng Li, Srinivas Chamakuri, Martin M Matzuk, Conrad Santini, Kevin R Mackenzie, Damian W Young

Faculty, Staff and Students Publications

The bromodomain inhibitor (+)-JQ1 is a highly validated chemical probe; however, it exhibits poor in vivo pharmacokinetics. To guide efforts toward improving its pharmacological properties, we identified the (+)-JQ1 primary metabolite using chemical catalysis methods. Treatment of (+)-JQ1 with tetrabutylammonium decatungstate under photochemical conditions resulted in selective formation of an aldehyde at the 2-position of the thiophene ring [(+)-JQ1-CHO], which was further reduced to the 2-hydroxymethyl analog [(+)-JQ1-OH]. Comparative LC/MS analysis of (+)-JQ1-OH to the product obtained from liver microsomes suggested (+)-JQ1-OH as the major metabolite of (+)-JQ1. The 2-thienyl position was then substituted to generate a trideuterated (−CD3, (+)-JQ1-D) …

The Macrophage Autophagy-Lysosome System In Atherosclerosis Pathogenesis, Astrid Carolina Rodriguez Velez

Arts & Sciences Graduate Student Theses and Dissertations

Cardiovascular diseases, particularly atherosclerosis, pose significant health concerns, necessitating a comprehensive understanding of underlying mechanisms for effective therapeutic interventions. In this dissertation, I studied diverse topics, ranging from dietary impacts to intracellular processes, shedding light on novel avenues for atherosclerosis research. It is divided in 4 core projects. In Chapter 2) I studied how dietary protein drives atherosclerosis and lesion complexity. We found that protein ingestion acutely elevates amino acid levels in blood and atherosclerotic plaques, stimulating macrophage mTOR signaling. This is causal in plaque progression as the effects are abrogated in macrophage-specific Raptor-null mice. Mechanistically, we find amino acids …

Mechanism Of Anion Exchange And Small-Molecule Inhibition Of Pendrin, Lie Wang, Anthony Hoang, Eva Gil-Iturbe, Arthur Laganowsky, Matthias Quick, Ming Zhou

Faculty, Staff and Students Publications

Pendrin (SLC26A4) is an anion exchanger that mediates bicarbonate (HCO3−) exchange for chloride (Cl−) and is crucial for maintaining pH and salt homeostasis in the kidney, lung, and cochlea. Pendrin also exports iodide (I−) in the thyroid gland. Pendrin mutations in humans lead to Pendred syndrome, causing hearing loss and goiter. Inhibition of pendrin is a validated approach for attenuating airway hyperresponsiveness in asthma and for treating hypertension. However, the mechanism of anion exchange and its inhibition by drugs remains poorly understood. We applied cryo-electron microscopy to determine structures of pendrin from Sus scrofa in the presence of either Cl−, …

Vibroscape Analysis Reveals Acoustic Niche Overlap And Plastic Alteration Of Vibratory Courtship Signals In Ground-Dwelling Wolf Spiders, Noori Choi, Pat Miller, Eileen A. Hebets

School of Biological Sciences: Faculty Publications

To expand the scope of soundscape ecology to encompass substrate-borne vibrations (i.e. vibroscapes), we analyzed the vibroscape of a deciduous forest floor using contact microphone arrays followed by automated processing of large audio datasets. We then focused on vibratory signaling of ground-dwelling Schizocosa wolf spiders to test for (i) acoustic niche partitioning and (ii) plastic behavioral responses that might reduce the risk of signal interference from substrate-borne noise and conspecific/heterospecific signaling. Two closely related species - S. stridulans and S. uetzi - showed high acoustic niche overlap across space, time, and dominant frequency. Both species show plastic behavioral …

Headstarting Eastern Box Turtles In Southwest Michigan: Implications For Growth, Survival, And Spatial Ecology, Faith C. Kuzma

Masters Theses

Turtles and tortoises are one of the most endangered groups of animals in the world as anthropogenic activities like overexploitation, collection for the pet trade, and habitat loss and fragmentation have caused dramatic population declines in recent years. As a result, proactive conservation techniques are being increasingly implemented to facilitate population recovery. Headstarting is a popular chelonian conservation technique that aims to reduce vulnerability and increase survival of juvenile turtles. While headstarting has been a valuable tool for many species, there is increasing evidence that species-specific influences impact its success. In this study, we headstarted four annual cohorts of eastern …

Microhabitat Selection Of Adult Female Eastern Diamondback Rattlesnakes (Crotalus Adamanteus) In The Carolinas, Matthew Gacheny

Theses, Dissertations and Capstones

Reptiles rely on environmental conditions to regulate body temperature using behavioral strategies to meet basic life history needs. Viviparous squamates use thermoregulatory behaviors to meet energetic requirements for vitellogenesis and gestation, which carry considerable energetic costs and must balance with maintenance and survival. Embryonic development is often optimized in a narrower temperature range than the mother’s preferred temperature, creating an intergenerational conflict that should be addressed with maternal microhabitat selection. Field-based studies are needed to understand the link between the thermal biology of reptiles, their reproduction, and implications for population viability. With a use-availability logistic regression framework, I examined thermal …

Symbiosis Under Stress: Unraveling The Interplay Of Ocean Acidification And Rising Temperatures On Acropora Samoensis (Staghorn Coral), Jerald William Smolkin

Theses and Dissertations

This experiment explores the response of marine organisms to the combined challenges of ocean acidification and rising temperatures, with a focus on coral reef ecosystems. As global climate change threatens profound declines in coral reefs, understanding the multifaceted impacts of these stressors becomes crucial. The study observes cellular changes in A. samoensis tissues in four different groups, including control, Temp, pH, and Temp and pH. Results indicate significant breakdown of membrane compartmentalization and cell junctions, with notable degradation and calcium carbonate crystallization in pH-stressed samples. Additionally, chlorophyll extraction data support coral bleaching due to the expulsion of zooxanthellae. These findings …

Factors Associated With Acoustic Bat Presence During Spring Emergence In The Appalachian Mountains Of Western Virginia, Emily Kirk Pody

Theses, Dissertations and Capstones

Studies of threats that bats face during hibernation have increased in response to white-nose syndrome (WNS), a fungal disease that has ravaged North American bat populations. However, impacts of WNS on bat ecology during spring emergence, when bats are potentially recovering from infection and allocating resources for reproduction, is relatively understudied. As more bat species become listed at the federal and state level, the need to understand the factors associated with spring emergence is critical for improving conservation guidelines and habitat management practices. Acoustic monitoring is an efficient method for monitoring bat presence for prolonged periods of time, giving biologists …

Comparison Of Energy Budget Of Cockroach Nymph (Hemimetabolous) And Hornworm (Holometabolous) Under Food Restriction, Charles J. Green, Chen Hou

Biological Sciences Faculty Research & Creative Works

Animals with different life histories budget their intake energy differently when food availability is low. It has been shown previously that hornworm (larva of Manduca sexta), a holometabolous insect species with a short development stage, prioritizes growth at the price of metabolism under food restriction, but it is unclear how hemimetabolous insect species with a relatively long development period budget their intake energy under food scarcity. Here, we use orange head cockroaches (Eublaberus posticus) to investigate this question. We found that for both species under food restriction, rates of metabolism and growth were suppressed, but the degree of reduction was …

Do Nest Box Temperatures Affect Nest Success And Nestlings Growth For Eastern Bluebirds?, Mathew Gordon, Katie Stumpf

Graduate Research Showcase

Rising global temperatures due to climate change have caused declines in many species. For birds, temperature is a primary factor in nest site selection and nest success, so successful management will require temperature mitigation techniques. Secondary cavity nesting birds such as the Eastern Bluebird are particularly vulnerable as common occupants of nest boxes, which are often warmer inside than the outside ambient temperature. Temperatures exceeding 42°C can have numerous negative consequences for Bluebirds, including reducing hatching success and nestling growth. We monitored 50 Eastern Bluebird nest boxes (25 are painted white and 25 are unpainted) at Panola Mountain State Park …

The Comparison Of Different Wetland Fish Assemblages Over Time, Robert Edward Adelstein

Theses, Dissertations and Capstones

Wetlands provide essential ecosystem services. Historically, we have drained and filled 73% of wetlands for agricultural use throughout the United States from the 1780s to the 1980s (Dahl, 1990). A nationwide focus on restoring wetlands has since occurred. Literature on restored/mitigated wetlands is rife with examples that do and do not support the same ecosystem services as natural wetlands (Langston, 1997; Meil, 2014). Restoration of wetlands occurred at the Green Bottom Wildlife Management Area (GBWMA) over several decades. Various sections of the wetland were classified by age, water depth, and vegetation. One hypothesis was that differences in fish assemblage would …

Female Biology, Jennifer Dever

All USF Faculty Authored Books

Over twenty years ago I developed a course for the upper- level biology major at the University of San Francisco called

Female Biology. This was from what I perceived as a gap in the undergraduate biology curriculum- students were not learning about the evolutionary aspects of being female and studying the specific health-related issues unique to women. The information in the most widely used general biology textbooks written from a male perspective, focuses on research gained from male models by work conducted in male-led laboratories. There still exists a problem with a lack of adequate representation of women in biomedical …