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An Ameliorated Prediction Of Drug–Target Interactions Based On Multi-Scale Discrete Wavelet Transform And Network Features, Cong Shen, Yijie Ding, Jijun Tang, Xinying Xu, Fei Guo 2017 University of South Carolina

An Ameliorated Prediction Of Drug–Target Interactions Based On Multi-Scale Discrete Wavelet Transform And Network Features, Cong Shen, Yijie Ding, Jijun Tang, Xinying Xu, Fei Guo

Faculty Publications

The prediction of drug–target interactions (DTIs) via computational technology plays a crucial role in reducing the experimental cost. A variety of state-of-the-art methods have been proposed to improve the accuracy of DTI predictions. In this paper, we propose a kind of drug–target interactions predictor adopting multi-scale discrete wavelet transform and network features (named as DAWN) in order to solve the DTIs prediction problem. We encode the drug molecule by a substructure fingerprint with a dictionary of substructure patterns. Simultaneously, we apply the discrete wavelet transform (DWT) to extract features from target sequences. Then, we concatenate and normalize the target, drug, …


Integrity Coded Databases: Ensuring Correctness And Freshness Of Outsourced Databases, Ujwal Karki 2017 Boise State University

Integrity Coded Databases: Ensuring Correctness And Freshness Of Outsourced Databases, Ujwal Karki

Boise State University Theses and Dissertations

In recent years, cloud storage has become an inexpensive and convenient option for individuals and businesses to store and retrieve information. The cloud releases the data owner from the financial burden of hiring professionals to create, update and maintain local databases. The advancements in the field of networking and the growing need for computing resources for various applications have made cloud computing more demanding. Its positive aspects make the cloud an attractive option for data storage, but this service comes with a cost that it requires the data owner to relinquish control of their information to the cloud service provider. …


Computer-Aided Detection Of Pathologically Enlarged Lymph Nodes On Non-Contrast Ct In Cervical Cancer Patients For Low-Resource Settings, Brian M. Anderson, Laurence E. Court, Ann Klopp, Stephen F. Kry, Jennifer Johnson, Erik Cressman, Arvind Rao, Jinzhong Yang 2017 The University of Texas MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences

Computer-Aided Detection Of Pathologically Enlarged Lymph Nodes On Non-Contrast Ct In Cervical Cancer Patients For Low-Resource Settings, Brian M. Anderson, Laurence E. Court, Ann Klopp, Stephen F. Kry, Jennifer Johnson, Erik Cressman, Arvind Rao, Jinzhong Yang

Dissertations and Theses (Open Access)

The mortality rate of cervical cancer is approximately 266,000 people each year, and 70% of the burden occurs in Low- and Middle- Income Countries (LMICs). Radiation therapy is the primary modality for treatment of locally advanced cervical cancer cases. In the absence of high quality diagnostic imaging needed to identify nodal metastasis, many LMIC sites treat standard pelvic fields, failing to include node metastasis outside of the field and/or to boost lymph nodes in the abdomen and pelvis. The first goal of this project was to create a program which automatically identifies positive cervical cancer lymph nodes on non-contrast daily …


Optimal Constrained Wireless Emergency Network Antenna Placement, Swapnil Gaikwad, David Anastasiu 2017 San Jose State University

Optimal Constrained Wireless Emergency Network Antenna Placement, Swapnil Gaikwad, David Anastasiu

Faculty Publications

Communication is paramount, especially during a natural disaster or other emergency. Even when traditional lines of communication become unavailable, emergency response teams must be able to communicate with each other and the outside world. To facilitate this need, major cities across the United States are deploying wireless emergency networks (WENs) that serve as a secure communication channel between emergency response points (police stations, shelters, food banks, hospitals, etc.) and the outside world. An important question when designing such networks is identifying the locations within the city where access points (APs) should be placed to construct a reliable WEN. We propose …


Dynamic Adversarial Mining - Effectively Applying Machine Learning In Adversarial Non-Stationary Environments., Tegjyot Singh Sethi 2017 University of Louisville

Dynamic Adversarial Mining - Effectively Applying Machine Learning In Adversarial Non-Stationary Environments., Tegjyot Singh Sethi

Electronic Theses and Dissertations

While understanding of machine learning and data mining is still in its budding stages, the engineering applications of the same has found immense acceptance and success. Cybersecurity applications such as intrusion detection systems, spam filtering, and CAPTCHA authentication, have all begun adopting machine learning as a viable technique to deal with large scale adversarial activity. However, the naive usage of machine learning in an adversarial setting is prone to reverse engineering and evasion attacks, as most of these techniques were designed primarily for a static setting. The security domain is a dynamic landscape, with an ongoing never ending arms race …


Effects Of Intentional Electromagnetic Interference On Analog To Digital Converter Measurements Of Sensor Outputs And General Purpose Input Output Pins, David A. Ware 2017 Utah State University

Effects Of Intentional Electromagnetic Interference On Analog To Digital Converter Measurements Of Sensor Outputs And General Purpose Input Output Pins, David A. Ware

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As technology becomes more prevalent, its application to safety and security in critical systems continues to increase. This leads to an increased dependence on sensors to provide an accurate view of the environment surrounding an application. These sensors can also be exploited by a malicious individual to attack a system and compromise its safety or security. These attacks change the reported value of a sensor so that it doesn't reflect the real situation. The systems in a car can be used as an example of this. Cars can have numerous sensors that measure a variety of things, including the car's …


Proactive And Reactive Coordination Of Non-Dedicated Agent Teams Operating In Uncertain Environments, Pritee AGRAWAL, Pradeep VARAKANTHAM 2017 Singapore Management University

Proactive And Reactive Coordination Of Non-Dedicated Agent Teams Operating In Uncertain Environments, Pritee Agrawal, Pradeep Varakantham

Research Collection School Of Computing and Information Systems

Domains such as disaster rescue, security patrolling etc. often feature dynamic environments where allocations of tasks to agents become ineffective due to unforeseen conditions that may require agents to leave the team. Agents leave the team either due to arrival of high priority tasks (e.g., emergency, accident or violation) or due to some damage to the agent. Existing research in task allocation has only considered fixed number of agents and in some instances arrival of new agents on the team. However, there is little or no literature that considers situations where agents leave the team after task allocation. To that …


Indexing Metric Uncertain Data For Range Queries And Range Joins, Lu CHEN, Yunjun GAO, Aoxiao ZHONG, Christian S. JENSEN, Gang CHEN, Baihua ZHENG 2017 Zhejiang University

Indexing Metric Uncertain Data For Range Queries And Range Joins, Lu Chen, Yunjun Gao, Aoxiao Zhong, Christian S. Jensen, Gang Chen, Baihua Zheng

Research Collection School Of Computing and Information Systems

Range queries and range joins in metric spaces have applications in many areas, including GIS, computational biology, and data integration, where metric uncertain data exist in different forms, resulting from circumstances such as equipment limitations, high-throughput sequencing technologies, and privacy preservation. We represent metric uncertain data by using an object-level model and a bi-level model, respectively. Two novel indexes, the uncertain pivot B+-tree (UPB-tree) and the uncertain pivot B+-forest (UPB-forest), are proposed in order to support probabilistic range queries and range joins for a wide range of uncertain data types and similarity metrics. Both index structures use a small set …


Pivot-Based Metric Indexing, Lu CHEN, Yunjun GAO, Baihua ZHENG, Christian S. JENSEN, Hanyu YANG, Keyu YANG 2017 Zhejiang University

Pivot-Based Metric Indexing, Lu Chen, Yunjun Gao, Baihua Zheng, Christian S. Jensen, Hanyu Yang, Keyu Yang

Research Collection School Of Computing and Information Systems

The general notion of a metric space encompasses a diverse range of data types and accompanying similarity measures. Hence, metric search plays an important role in a wide range of settings, including multimedia retrieval, data mining, and data integration. With the aim of accelerating metric search, a collection of pivot-based indexing techniques for metric data has been proposed, which reduces the number of potentially expensive similarity comparisons by exploiting the triangle inequality for pruning and validation. However, no comprehensive empirical study of those techniques exists. Existing studies each offers only a narrower coverage, and they use different pivot selection strategies …


Geometric Approaches For Top-K Queries [Tutorial], Kyriakos MOURATIDIS 2017 Singapore Management University

Geometric Approaches For Top-K Queries [Tutorial], Kyriakos Mouratidis

Research Collection School Of Computing and Information Systems

Top-k processing is a well-studied problem with numerous applications that is becoming increasingly relevant with the growing availability of recommendation systems and decision-making software. The objective of this tutorial is twofold. First, we will delve into the geometric aspects of top-k processing. Second, we will cover complementary features to top-k queries, with strong practical relevance and important applications, that have a computational geometric nature. The tutorial will close with insights in the effect of dimensionality on the meaningfulness of top-k queries, and interesting similarities to nearest neighbor search.


Semantic Visualization For Short Texts With Word Embeddings, Van Minh Tuan LE, Hady W. LAUW 2017 Singapore Management University

Semantic Visualization For Short Texts With Word Embeddings, Van Minh Tuan Le, Hady W. Lauw

Research Collection School Of Computing and Information Systems

Semantic visualization integrates topic modeling and visualization, such that every document is associated with a topic distribution as well as visualization coordinates on a low-dimensional Euclidean space. We address the problem of semantic visualization for short texts. Such documents are increasingly common, including tweets, search snippets, news headlines, or status updates. Due to their short lengths, it is difficult to model semantics as the word co-occurrences in such a corpus are very sparse. Our approach is to incorporate auxiliary information, such as word embeddings from a larger corpus, to supplement the lack of co-occurrences. This requires the development of a …


Special Section: Technological Innovations For Communication And Collaboration In Social Spaces, Eric K. CLEMONS, Rajiv M. DEWAN, Robert J. KAUFFMAN, Thomas A. WEBER 2017 University of Pennsylvania

Special Section: Technological Innovations For Communication And Collaboration In Social Spaces, Eric K. Clemons, Rajiv M. Dewan, Robert J. Kauffman, Thomas A. Weber

Research Collection School Of Computing and Information Systems

Research on social communication and collaboration is of high importance today in Information Systems, especially for interdisciplinary inquiry that emphasizes topics related to strategy, information, technology, economics, and society. The articles that are showcased in this special section of the Journal of Management Information Systems address issues that arise in a number of important contemporary contexts.


Toward Accurate Network Delay Measurement On Android Phones, Weichao LI, Daoyuan WU, Rocky K. C. CHANG, Ricky K. P. MOK 2017 Huawei Future Network Theory Lab, Hong Kong

Toward Accurate Network Delay Measurement On Android Phones, Weichao Li, Daoyuan Wu, Rocky K. C. Chang, Ricky K. P. Mok

Research Collection School Of Computing and Information Systems

Measuring and understanding the performance of mobile networks is becoming very important for end users and operators. Despite the availability of many measurement apps, their measurement accuracy has not received sufficient scrutiny. In this paper, we appraise the accuracy of smartphone-based network performance measurement using the Android platform and the network round-trip time (RTT) as the metric. We show that two of the most popular measurement apps-Ookla Speedtest and MobiPerf-have their RTT measurements inflated. We build three test apps that cover three common measurement methods and evaluate them in a testbed. We overcome the main challenge of obtaining a complete …


Smartphone Sensing Meets Transport Data: A Collaborative Framework For Transportation Service Analytics, Yu LU, Archan MISRA, Wen SUN, Huayu WU 2017 Beijing Normal University

Smartphone Sensing Meets Transport Data: A Collaborative Framework For Transportation Service Analytics, Yu Lu, Archan Misra, Wen Sun, Huayu Wu

Research Collection School Of Computing and Information Systems

We advocate for and introduce TRANSense, a framework for urban transportation service analytics that combines participatory smartphone sensing data with city-scale transportation-related transactional data (taxis, trains etc.). Our work is driven by the observed limitations of using each data type in isolation: (a) commonly-used anonymous city-scale datasets (such as taxi bookings and GPS trajectories) provide insights into the aggregate behavior of transport infrastructure, but fail to reveal individual-specific transport experiences (e.g., wait times in taxi queues); while (b) mobile sensing data can capture individual-specific commuting-related activities, but suffers from accuracy and energy overhead challenges due to usage artefacts and lack …


Security For 5g Mobile Wireless Networks, Dongfeng Fang, Yi Qian, Rose Qingyang Hu 2017 University of Nebraska-Lincoln

Security For 5g Mobile Wireless Networks, Dongfeng Fang, Yi Qian, Rose Qingyang Hu

Department of Electrical and Computer Engineering: Faculty Publications

The advanced features of 5G mobile wireless network systems yield new security requirements and challenges. This paper presents a comprehensive survey on security of 5G wireless network systems compared to the traditional cellular networks. The paper starts with a review on 5G wireless networks particularities as well as on the new requirements and motivations of 5G wireless security. The potential attacks and security services with the consideration of new service requirements and new use cases in 5G wireless networks are then summarized. The recent development and the existing schemes for the 5G wireless security are presented based on the corresponding …


Cyclist Detection, Tracking, And Trajectory Analysis In Urban Traffic Video Data, Farideh Foroozandeh Shahraki 2017 University of Nevada, Las Vegas

Cyclist Detection, Tracking, And Trajectory Analysis In Urban Traffic Video Data, Farideh Foroozandeh Shahraki

UNLV Theses, Dissertations, Professional Papers, and Capstones

The major objective of this thesis work is examining computer vision and machine learning detection methods, tracking algorithms and trajectory analysis for cyclists in traffic video data and developing an efficient system for cyclist counting. Due to the growing number of cyclist accidents on urban roads, methods for collecting information on cyclists are of significant importance to the Department of Transportation. The collected information provides insights into solving critical problems related to transportation planning, implementing safety countermeasures, and managing traffic flow efficiently. Intelligent Transportation System (ITS) employs automated tools to collect traffic information from traffic video data. In comparison to …


Improving Pattern Recognition And Neural Network Algorithms With Applications To Solar Panel Energy Optimization, Ernesto Zamora Ramos 2017 University of Nevada, Las Vegas

Improving Pattern Recognition And Neural Network Algorithms With Applications To Solar Panel Energy Optimization, Ernesto Zamora Ramos

UNLV Theses, Dissertations, Professional Papers, and Capstones

Artificial Intelligence is a big part of automation and with today's technological advances, artificial intelligence has taken great strides towards positioning itself as the technology of the future to control, enhance and perfect automation. Computer vision includes pattern recognition and classification and machine learning. Computer vision is at the core of decision making and it is a vast and fruitful branch of artificial intelligence. In this work, we expose novel algorithms and techniques built upon existing technologies to improve pattern recognition and neural network training, initially motivated by a multidisciplinary effort to build a robot that helps maintain and optimize …


An Interactive Interface For Nursing Robots., Ankita Sahu 2017 University of Louisville

An Interactive Interface For Nursing Robots., Ankita Sahu

Electronic Theses and Dissertations

Physical Human-Robot Interaction (pHRI) is inevitable for a human user while working with assistive robots. There are various aspects of pHRI, such as choosing the interface, type of control schemes implemented and the modes of interaction. The research work presented in this thesis concentrates on a health-care assistive robot called Adaptive Robot Nursing Assistant (ARNA). An assistive robot in a health-care environment has to be able to perform routine tasks and be aware of the surrounding environment at the same time. In order to operate the robot, a teleoperation based interaction would be tedious for some patients as it would …


A Data Science Pipeline For Educational Data : A Case Study Using Learning Catalytics In The Active Learning Classroom., Asuman Cagla Acun Sener 2017 University of Louisville

A Data Science Pipeline For Educational Data : A Case Study Using Learning Catalytics In The Active Learning Classroom., Asuman Cagla Acun Sener

Electronic Theses and Dissertations

This thesis presents an applied data science methodology on a set of University of Louisville, Speed School of Engineering student data. We used data mining and classic statistical techniques to help educational researchers quickly see the data trends and peculiarities. Our data includes scores and information about two Engineering Fundamental Class. The format of these classes is called an inverted classroom model or flipped class. The purpose of this study is to analyze the data in order to uncover potentially hidden information, tell interesting stories about the data, examine student learning behavior and learning performance in an active learning environment, …


Utilizing Researchgate Social Network By Iranian Engineering, Amir Reza Asnafi, Maryam Rahmani MA in Knowledge and Information Scienc 2017 Shahid Beheshti University

Utilizing Researchgate Social Network By Iranian Engineering, Amir Reza Asnafi, Maryam Rahmani Ma In Knowledge And Information Scienc

Library Philosophy and Practice (e-journal)

This study aimed to assess the role of Researchgate in the development of scientific- scholarly activities among Faculty Members of University of Tehran's Engineering College. This study is Survey and descriptive research and data collection tools, including profiles of researchers at the Researchgate and questionnaire. The study population included faculty members of University of Tehran's Engineering College in 2016 was 242 researcher were earned RG score. The sample 144 subjects who were selected via stratified random sampling method and the questionnaire distributed 144 questionnaires were collected and then Results were analyzed using SPSS software From the perspective of engineering researchers, …


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