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Advanced Knowledge Extraction With Biomedical Data Using Llms, Akshat Krishna 2025 San Jose State University

Advanced Knowledge Extraction With Biomedical Data Using Llms, Akshat Krishna

Master's Projects

The rapid growth of biomedical research has led to an overwhelming volume of unstructured textual data in the scientific literature. This has necessitated the development of an automated approach for knowledge extraction and integration. In

this project, we present a comprehensive pipeline for constructing a unified biomed- ical knowledge graph by combining two well-known datasets: CHEMPROT [1],

which captures chemical–protein interactions, and EU-ADR [2], which annotates drug–gene–disease relationships. In order to identify important biomedical entities and interactions from CHEMPROT dataset, we perform Named Entity Recognition (NER) and relation Extraction (RE) using state-of-the-art biomedical models like BioBERT [3], BioGPT [4] and …


Mitigating Cold Start Problem Through Metadata Integration And User Preference Analysis, Prabaljit Walia 2025 San Jose State University

Mitigating Cold Start Problem Through Metadata Integration And User Preference Analysis, Prabaljit Walia

Master's Projects

Recommendation systems power the most popular platforms in the world: from content catalogs on Netflix to custom feeds on TikTok – the importance of recommendation systems is significant. Collaborative filtering, the most popular recommendation technique, is essentially based on the idea of leveraging collective user intelligence i.e., creating recommendations by finding similar users. But this technique suffers when there is not enough data in the profiles of users, formally termed as the cold start problem. This research focuses on this problem by introducing an approach that integrates metadata-driven similarity measures with profile expansion techniques. Our approach combines traditional collaborative filtering …


Machine Learning Based Network Traffic Classification With Cosine-Similarity Based Out-Of-Distribution Detection, Prabhat Edupuganti 2025 San Jose State University

Machine Learning Based Network Traffic Classification With Cosine-Similarity Based Out-Of-Distribution Detection, Prabhat Edupuganti

Master's Projects

The changes occurring in the amount of encrypted network traffic is growing at an alarming rate. This development has created intricate problems in traffic classification which is vital for effective cybersecurity. Moreover, most frameworks seem to ignore OOD detection, model calibration and novel pattern detection as cornerstone problem areas. The due analysis is presented as a machine learning approach aimed at resolving encrypted traffic classification issues and focuses on novel OOD detection and calibration issues. Primary contributions comprise detection of out-of-distribution states using softmax scaled cosine similarity, advanced variance-based feature elimination, and lowering ECE using stringent NNs. This work demonstrates …


Real-Time Adaptive Framework For Topic Modeling In Social Engineering Attacks, Manav Bhasin 2025 San Jose State University

Real-Time Adaptive Framework For Topic Modeling In Social Engineering Attacks, Manav Bhasin

Master's Projects

Detecting social engineering attempts is crucial for security, as these threats are becoming more frequent and increasingly exploit human vulnerabilities. This research focuses on topic modeling using conversational data from Kevin Mitnick’s ”The Art of Deception” with dialogues that illustrate various social engineering strategies. The dataset comprises manually extracted and synthetically augmented conversations to ensure natural dialogue flow. Two methodologies are presented for utterance-level and global topic extraction: prompt engineering leveraging OpenAI’s GPT-4o-mini, characterized by few-shot learning and chain-of-thought prompting, and Quantized Low Rank Adaptation (QLoRA) utilizing Mistral’s 7B instruct model for efficient fine-tuning. Through experimentation and evaluation, this study …


Predicting Biomechanical Risk Factors For Division - I Women’S Basketball Athletes, Aayushi Shah, Vanaja Agarwal, Dhairya Shah, Harman Jani, Sristi Sharma, Kaya Tolga, Christopher Taber, Mehul Raval 2025 Sacred Heart University

Predicting Biomechanical Risk Factors For Division - I Women’S Basketball Athletes, Aayushi Shah, Vanaja Agarwal, Dhairya Shah, Harman Jani, Sristi Sharma, Kaya Tolga, Christopher Taber, Mehul Raval

School of Computer Science & Engineering Faculty Publications

Collegiate basketball is characterized by high-impact movements such as jump landings, making athletes more susceptible to injuries. Critical biomechanical factors like knee flexion, lateral trunk flexion, and foot landing asymmetry are strongly associated with injury risk. This study aims to predict six biomechanical risk factors in the landing error scoring system (LESS). The dataset comprises 8600 video frames of counter-movement jumps (CMJs) from 17 NCAA Division I female basketball athletes, recorded from frontal and lateral perspectives and annotated using a customized error annotation algorithm. The study uses the You Only Look Once (YOLOv5nu) model to analyze the basketball athletes’ CMJ …


Implementation Of Quantized Artificial Neural Networks With Spintronic Stochastic Computing, Saadi Sabyasachi Mr. 2025 Virginia Commonwealth University

Implementation Of Quantized Artificial Neural Networks With Spintronic Stochastic Computing, Saadi Sabyasachi Mr.

Theses and Dissertations

Artificial intelligence or machine learning is going through a rapid expansion. It also incurs significant costs for power and device footprints. Various approaches are being explored to design energy and hardware efficient machine learning models. Stochastic computing has been proposed for efficient machine learning implementation. It requires a source of random number generation which poses some practical challenges. So spintronic solutions such as magnetic tunnel junction has been used for random number generation. Again, spintronic random number generation to implement high precision circuit is prone to device-to-device variations. Hence we designed quantized artificial neural network with spintronic stochastic computing which …


Enhancing Ai-Driven Automation For Object Detection And Computer Vision, Nafeeul Alam Walee 2025 Georgia Southern University

Enhancing Ai-Driven Automation For Object Detection And Computer Vision, Nafeeul Alam Walee

College of Graduate Studies: Theses & Dissertations

In recent years, AI-driven automation has revolutionized the field of object detection and computer vision, enabling sophisticated and efficient solutions across various industries. This research explores the latest advances and techniques in improving AI-driven automation for object detection and computer vision applications. We examine state-of-the-art deep learning models and frameworks that have contributed to significant improvements in accuracy and speed and highlight the generative results. The focus is on exploring the real-time processing capabilities that have expanded the applicability of these technologies in real-world scenarios. Furthermore, we investigate image integration and video data to improve precision detection and contextual understanding. …


Virtual Environment Creation And Camera Calibration For Soft Target Identification And Assistance In Crowded Spaces With A Sensor Network And A Robotic Dog, Eltan Samoylov 2025 CUNY City College

Virtual Environment Creation And Camera Calibration For Soft Target Identification And Assistance In Crowded Spaces With A Sensor Network And A Robotic Dog, Eltan Samoylov

Dissertations and Theses

Crowded places are increasingly targets of violence due to the increased accessibility and covertness of weapons, explosives, and other technology like drones. Addressing the challenges of protecting crowded places and assisting vulnerable individuals requires a multidisciplinary approach, taking inspiration from many different perspectives. Video surveillance of these crowded public facilities, such as train and bus stations, airports, shopping malls, and sports arenas, is very important to public safety, both for identifying threats/terrorist attacks and implementing evacuation plans.

The work of this thesis is part of a larger project aiming to explore the potential of using real-time computer vision and deep …


Cognitive Map Generation For Vision And Language Navigation, Alexander Sandoval Mesa 2025 CUNY City College

Cognitive Map Generation For Vision And Language Navigation, Alexander Sandoval Mesa

Dissertations and Theses

Visual-Language Navigation (VLN) presents significant challenges for autonomous agents, such as robots and virtual assistants, particularly in complex, dynamic environments where the seamless integration of visual perception and natural language understanding is critical. Traditional VLN systems often struggle with effectively aligning language instructions and visual scene understanding, limiting their adaptability and navigation efficiency.

This thesis proposes a novel Cognitive Map-based framework that addresses these challenges by transforming natural language navigation instructions into structured graph representations. The Cognitive Map consists of nodes representing waypoints, landmarks, decision points, and edges encoding spatial relationships and navigational actions. These maps are generated using Large …


Immersive Extended Reality For Lower Limb Rehabilitation: Design, Deployment, And Pilot Study, Jeremy Varghese 2025 University at Albany, State University of New York

Immersive Extended Reality For Lower Limb Rehabilitation: Design, Deployment, And Pilot Study, Jeremy Varghese

Electronic Theses & Dissertations (2024 - present)

This thesis presents the design, deployment, and pilot study of an immersive extended-reality (XR) rehabilitation system integrated with a ceiling-mounted dynamic body-weight support device (Vector Gait and Safety System), aimed at improving lower-limb rehabilitation out- comes. The implemented system combined immersive virtual tasks—such as Touch Wall, Ball Launcher, Obstacle Dodge, and Stepping Stones—with real-time movement tracking, enabling detailed kinematic analysis and personalized therapy. A pilot study conducted at Sunnyview Rehabilitation Hospital involved seven patients with various mobility impairments, providing quantitative performance metrics and quali- tative user feedback. Results demonstrated consistent patient engagement, measurable im- provements in gait speed and task …


Machine Learning-Driven Optimization For Utility-Scale Quantum Optimization, Bao Tran 2025 Virginia Commonwealth University

Machine Learning-Driven Optimization For Utility-Scale Quantum Optimization, Bao Tran

Theses and Dissertations

Hard combinatorial optimization problems, often mapped to Ising models, promise potential solutions with quantum advantage but are constrained by limited qubit counts in near-term devices. We present an innovative quantum-inspired framework that dynamically compresses large Ising models to fit available quantum hardware of different sizes. Thus, we aim to bridge the gap between large-scale optimization and current hardware capabilities. Our method leverages a physics-inspired GNN architecture to capture complex interactions in Ising models and accurately predict alignments among neighboring spins (aka qubits) at ground states. By progressively merging such aligned spins, we can reduce the model size while preserving the …


Swarming Segregation: Leveraging Swarm Intelligence And Regionalization As Instruments For School District Desegregation, Jeffrey Wooten 2025 Virginia Commonwealth University

Swarming Segregation: Leveraging Swarm Intelligence And Regionalization As Instruments For School District Desegregation, Jeffrey Wooten

Theses and Dissertations

Even after Brown led to the South briefly having the most diverse schools in the nation, schools throughout the Northeast have remained the most segregated in the nation for decades. While federal jurisprudence has made compelling desegregation pursuant to the Equal Protection Clause more challenging, New Jersey has a particularly favorable landscape to address severe segregation. With a highly diverse, densely populated public enrollment, favorable state constitutional precedent, and a history of successfully compelling desegregation, New Jersey is fertile ground exploring regional desegregation. Scholars, judges, and even plaintiffs in ongoing litigation (Latino Action Network v. N.J.) have called for New …


Advanced 3d Lidar-Based Systems For Urban Traffic And Pedestrian Monitoring: Integrating Elevated Lidar, Data Collection, And Deep Learning For Precise Detection And Activity Classification, Nawfal Guefrachi 2025 Missouri University of Science and Technology

Advanced 3d Lidar-Based Systems For Urban Traffic And Pedestrian Monitoring: Integrating Elevated Lidar, Data Collection, And Deep Learning For Precise Detection And Activity Classification, Nawfal Guefrachi

Masters Theses

"Accurate and real-time monitoring of urban traffic and pedestrian activities is crucial for intelligent transportation systems (ITS) and smart cities. Traditional camera-based methods struggle with issues like lighting and privacy. This research leverages advanced three-dimension light detection and ranging (3D LiDAR) technology and computational frameworks to address these challenges, providing transformative solutions for urban traffic management and pedestrian safety. By strategically deploying elevated LiDAR sensors, detailed 3D point cloud data is captured, enabling precise monitoring of urban environments. Enhancements to LiDAR-based frameworks, such as fine-tuning the Point Voxel Region-Based Convolutional Neural Network (PV-RCNN), improve the detection of vehicles and pedestrians …


Lidar From The Skies: A Uav-Based Approach For Efficient Object Detection And Tracking, Baya Cherif 2025 Missouri University of Science and Technology

Lidar From The Skies: A Uav-Based Approach For Efficient Object Detection And Tracking, Baya Cherif

Masters Theses

"Recently, there has been a growing interest in deploying the Light Detection and Ranging (LiDAR) technology to gain traction in the autonomous vehicle industry, its applications are expanding into areas like smart cities, agriculture, and renewable energy. This work proposes an advanced approach to enhance aerial traffic monitoring using Li- DAR. We aim to provide accurate, real-time object detection and tracking from an aerial perspective by integrating Unmanned Aerial Vehicle (UAV) with LiDAR, culminating in a smart UAV-integrated LiDAR (A-LiD) sensor for traffic surveillance. We introduce an adapted version of one of the newest methods of the cutting-edge 3D object …


Development And Prototyping Of A Modular Quadruped Towards Testing Standardization For Legged Robot Stability, Michael Conner Larsen 2025 Northern Illinois University

Development And Prototyping Of A Modular Quadruped Towards Testing Standardization For Legged Robot Stability, Michael Conner Larsen

Graduate Research Theses & Dissertations

Legged robots are well-suited for navigating uneven and unmapped terrain, making them valuable in various robotics applications. Maintaining balance and stability in such environments relies on a combination of sensors, control strategies, and mechanical design. However, selecting the most effective sensing and control method for a given use case remains challenging. Previous studies have explored various approaches, integrating combinations of joint angle measurement, inertial measurement units (IMUs), torque-based control, leg force measurement, image processing, and machine learning, paired with numerous controller designs, which can contribute to stability. However, direct comparisons of these methods are often limited by the need for …


Human Swarm Interaction Using Non-Verbal Communication, Arunim Bhattacharya 2025 Northern Illinois University

Human Swarm Interaction Using Non-Verbal Communication, Arunim Bhattacharya

Graduate Research Theses & Dissertations

This research presents experimentally validated strategies for human-swarm robotic interaction through nonverbal communication. Applications of this work are in large-scale coverage problems that include search and rescue operations and environmental monitoring missions. The non-verbal interaction becomes critical in situations where wireless communication methods may be limited by bandwidth constraints, privacy concerns, or environmental clutter. The research objective of this dissertation is to design and evaluate methods of nonverbal communication between a human teleoperator and robotic swarms towards a bidirectional human-swarm interaction framework. Towards this, we first establish a reliable measure of real-time cognitive load that can serve to close the …


Navigating Big Data In Cyber Archaeology: An Updated Four-Field Approach Applied To San Miceli, Jared Wilson 2025 Andrews University

Navigating Big Data In Cyber Archaeology: An Updated Four-Field Approach Applied To San Miceli, Jared Wilson

Dissertations

Problem

This dissertation examines the evolving role of digital technologies in archaeological research, focusing on the management and interpretation of extensive digital datasets generated by modern excavations. Drawing on six years of comprehensive fieldwork at San Miceli, Sicily, this study critically evaluates and updates the established four-field methodology proposed by Levy et al. (2012), encompassing acquisition, analysis, dissemination, and curation. While traditional archaeological documentation methods rely heavily on analog techniques, these approaches increasingly fall short due to the rapid expansion and complexity of digital data.

Method

To address this gap, the dissertation refines and expands the current methodological framework by …


Quantum-Resilient Architectures For Enterprise And Cloud Information Systems, Implications Of Quantum Computing For Enterprise Cybersecurity And Data Integrity, Manikantha Varaprasad Inakollu 2025 University of South Florida

Quantum-Resilient Architectures For Enterprise And Cloud Information Systems, Implications Of Quantum Computing For Enterprise Cybersecurity And Data Integrity, Manikantha Varaprasad Inakollu

Computer Science and Engineering Faculty Publications

The emergence of quantum computing presents unprecedented challenges to contemporary enterprise cybersecurity frameworks. Current cryptographic systems that protect sensitive data and secure communications will become vulnerable to quantum attacks within the next decade. This research examines the implications of quantum computing advancement for enterprise and cloud information systems, proposing quantum-resilient architectural frameworks that can withstand both classical and quantum threats. We analyze the timeline of quantum computing development, assess vulnerabilities in existing enterprise security infrastructures, and evaluate post-quantum cryptographic approaches suitable for organizational implementation. Through comparative analysis of quantum-resistant algorithms and architectural patterns, this study demonstrates that enterprises must begin …


Blockchain-Enabled Trust Frameworks For Enterprise Information Systems, Establishing Verifiable Trust In Distributed Organizational Environments, Manikantha Varaprasad Inakollu 2025 University of South Florida

Blockchain-Enabled Trust Frameworks For Enterprise Information Systems, Establishing Verifiable Trust In Distributed Organizational Environments, Manikantha Varaprasad Inakollu

Computer Science and Engineering Faculty Publications

Enterprise information systems increasingly operate in distributed environments where traditional trust mechanisms based on centralized authority prove insufficient. This research develops a comprehensive blockchain-enabled trust framework that establishes verifiable, decentralized trust mechanisms for enterprise systems operating across organizational boundaries. The study addresses critical gaps in current enterprise architectures where trust depends on centralized intermediaries, creating single points of failure and limiting inter-organizational collaboration. Through examination of existing trust models and blockchain capabilities, we propose an integrated framework that combines cryptographic verification, distributed consensus, and smart contract automation to establish trust without centralized control. Our framework enables organizations to verify data …


Safe Data-Enabled Control Of Human-In-The-Loop Robotic Manipulator Systems, Ritirupa Dey, Avimanyu Sahoo, Vignesh Narayanan 2025 University of South Carolina

Safe Data-Enabled Control Of Human-In-The-Loop Robotic Manipulator Systems, Ritirupa Dey, Avimanyu Sahoo, Vignesh Narayanan

Publications

Safe control of human-in-the-loop (HIL) robotic manipulators is critical for applications such as assistive robotics, teleoperation in hazardous environments, and collaborative manufacturing. However, this remains challenging due to the lack of a unified framework that simultaneously addresses safety constraints, external disturbances, unmodeled dynamics, and dynamic role switching in the HIL setting. In this paper, we propose a novel NN-driven HIL control framework in which human–robot dyadic interaction occurs through the haptic channel. Using Lyapunov stability analysis, we theoretically show that the proposed NN-based controller ensures accurate joint trajectory tracking, compensates for system uncertainties, and adapts to human inputs modeled as …


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