Other Computer Engineering Commons^™

Identification Of Copy Number Variations (Cnvs) Of Epigenetic Factors Related To The Progression Of Pancreatic Ductal Adenocarcinoma (Pdac), Pavithra Raju

Master's Projects

Pancreatic ductal adenocarcinoma (PDAC) is a formidable challenge in oncology due to its aggressive form and late-stage detection. PDAC is known to be influenced by various epigenetic factors like DNA methylation and histone modifications. This study focuses on copy number variations (CNVs) within epigenetic factors which for their role in early diagnosis. Thus, paving the way for identification of potential biomarkers. The epigenetic pipeline was extended based on CNVs and the CNV modified sequences extracted were compared with the wild type sequences of epigenetic PDAC genes. The epigenetic gene KCNJ11 with copy number gain of CNV id 46771406 was used …

Analyzing The Benthic Cover Of Crustose Coralline Algae Using Mask-R Cnn, Rachana Ravindra

Master's Projects

Coral reefs, supporting 25% of marine biodiversity, confront challenges from local and global impacts like overfishing, runoff, acidification, and warming. Crustose Coralline Algae (CCA), pivotal for reef structure and coral settlement, are underrepresented in research. Current methods like Coral Point Count with Excel Extensions (CPCe) have limitations, relying on image quality and being time-consuming. This paper proposes computer vision and Mask R-CNN, a supervised machine learning model, for CCA analysis in reef images, considering color, texture, and shape. Results indicate promise in clustering and classifying organisms. The innovative technology reduces manual labor, enhancing image analysis, simplifying the understanding of CCA’s …

Ensemble Transformer Architecture For Efficient And Real Time Sign Language Translation, Sumeet Ghegade

Master's Projects

Sign language is a form of visual language that uses face expression and hand gestures to communicate thoughts and concepts. The term refers to multiple visual languages that share some common visual cues but differ in their grammar and syntax. Sign language translation (SLT) is a crucial step in closing the communication gap between hearing and hearingimpaired people. The study of SLT using machine learning has gotten a lot of interest during the last three years but despite progress, SLT research is still in its early phases. Most of the previous approaches first convert the signs to glosses and then …

Gesture Recognition Of Sign Language Alphabet Using Machine Learning Techniques, Gursimran Singh

Master's Projects

With the rising incidence of hearing loss, effective sign language recognition has become crucial for enhancing communication for individuals with hearing impairments. Traditional sensor-based recognition systems have been challenged by the complexities of realworld settings, prompting a shift toward more adaptable vision-based recognition systems. Distinct from previous studies, this work pioneers the use of ensemble methods with advanced filtering techniques on the Sign Language MNIST dataset, offering a novel perspective on sign language recognition. This research delves into the intersection of machine learning and image processing to develop a robust framework for sign language recognition. A range of filters, including …

Improving Developers' Understanding Of Regex Denial Of Service Tools Through Anti-Patterns And Fix Strategies, Sk Adnan Hassan, Zainab Aamir, Dongyoon Lee, James C. Davis, Francisco Servant

Department of Electrical and Computer Engineering Faculty Publications

Regular expressions are used for diverse purposes, including input validation and firewalls. Unfortunately, they can also lead to a security vulnerability called ReDoS (Regular Expression Denial of Service), caused by a super-linear worst-case execution time during regex matching. Due to the severity and prevalence of ReDoS, past work proposed automatic tools to detect and fix regexes. Although these tools were evaluated in automatic experiments, their usability has not yet been studied; usability has not been a focus of prior work. Our insight is that the usability of existing tools to detect and fix regexes will improve if we complement them …

An Empirical Study Of Pre-Trained Model Reuse In The Hugging Face Deep Learning Model Registry, Wenxin Jiang, Nicholas Synovic, Matt Hyatt, Taylor R. Schorlemmer, Rohan Sethi, Yung-Hsiang Lu, George K. Thiruvathukal, James C. Davis

Department of Electrical and Computer Engineering Faculty Publications

Deep Neural Networks (DNNs) are being adopted as components in software systems. Creating and specializing DNNs from scratch has grown increasingly difficult as state-of-the-art architectures grow more complex. Following the path of traditional software engineering, machine learning engineers have begun to reuse large-scale pre-trained models (PTMs) and fine-tune these models for downstream tasks. Prior works have studied reuse practices for traditional software packages to guide software engineers towards better package maintenance and dependency management. We lack a similar foundation of knowledge to guide behaviors in pre-trained model ecosystems.

In this work, we present the first empirical investigation of PTM reuse. …

Interest-Based Recommendation System Using Gmail Topic Modelling, Pranav Ghaskadbi

Master's Projects

Emails are a fundamental part of modern communication. Much of communicative discourse in modern society occurs over email, resulting in personal collections for each mail user which are rich in latent user’s interests. Conventional recommendation systems require historical data of user activity and interactions to derive user interests. The absence of activity and interaction data poses an interesting challenge for generating relevant recommendations for users. We were motivated to investigate approaches to identify user interests in the absence of historical data to generate personalized content recommendations. There is opportunity to derive user interests from email data, which can be used …

Identifying Potential Alzheimer’S Disease Biomarkers Beyond Amyloid-Beta And Tau, Frank Cai

Master's Projects

Alzheimer's Disease (AD) and other forms of Mild Cognitive Impairment (MCI) affect millions of people around the world. The buildup of Amyloid-Beta (Aβ) and Tau proteins in the brain produced by amyloid precursor protein (APP) has been identified as an important cofactor in the onset and progression of AD. However, although patients diagnosed with AD exhibit Aβ and Tau buildup, about 40% of the subjects with Aβ and Tau buildup are not diagnosed with AD. In this project, we hypothesize the involvement of other epigenetic interactions between APP and related genes in addition to the buildup of Aβ and Tau …

Classifying Sidewalk Materials Using Multi-Modal Data, Jiawei Liu

Dissertations and Theses

Navigating safely and independently presents considerable challenges for people who are blind or have low vision (BLV), as it requires a comprehensive understanding of their neighborhood environment. Our user study reveals that materials and objects on sidewalks play a crucial role in navigation tasks. Unfortunately, current methods for assessing sidewalk materials are suboptimal, often relying on labor-intensive and expensive manual assessments that fail to capture the full range of sidewalk features critical to individuals with BLV.

In response to this problem, this master’s thesis investigates deep learning approaches specifically designed for the classification of multi-modal sidewalk materials. The proposed framework …

Face Image And Video Analysis In Biometrics And Health Applications, Na Zhang

Graduate Theses, Dissertations, and Problem Reports (ETD)

Computer Vision (CV) enables computers and systems to derive meaningful information from acquired visual inputs, such as images and videos, and make decisions based on the extracted information. Its goal is to acquire, process, analyze, and understand the information by developing a theoretical and algorithmic model. Biometrics are distinctive and measurable human characteristics used to label or describe individuals by combining computer vision with knowledge of human physiology (e.g., face, iris, fingerprint) and behavior (e.g., gait, gaze, voice). Face is one of the most informative biometric traits. Many studies have investigated the human face from the perspectives of various different …

A Platform For In-Situ Creation Of Markerless, Location-Based Augmented Reality Content, Brett Kidman

Dartmouth College Master’s Theses

Augmented reality (AR) renders virtual objects over a real-world physical environment. Currently, the majority of the digital content for AR is created by professional developers with knowledge of AR frameworks such as ARKit and ARCore. User-Generated Content (UGC) is critical for the future of AR, as it will not only increase the number of AR experiences to match the projected rapid growth in the user base, but also democratize content creation. However, there is a current lack of UGC authoring tools for Augmented Reality (AR) to enable users to create, save, and share location-based, markerless AR content. Location-based AR persistently …

Machine Learning And Deep Learning Approaches For Gene Regulatory Network Inference In Plant Species, Sai Teja Mummadi

Dissertations, Master's Theses and Master's Reports

The construction of gene regulatory networks (GRNs) is vital for understanding the regulation of metabolic pathways, biological processes, and complex traits during plant growth and responses to environmental cues and stresses. The increasing availability of public databases has facilitated the development of numerous methods for inferring gene regulatory relationships between transcription factors and their targets. However, there is limited research on supervised learning techniques that utilize available regulatory relationships of plant species in public databases.

This study investigates the potential of machine learning (ML), deep learning (DL), and hybrid approaches for constructing GRNs in plant species, specifically Arabidopsis thaliana, …

Post-Implementation Erp Value Realization: A Decision Intelligence Framework, Manikantha Varaprasad Inakollu

Computer Science and Engineering Faculty Publications

Enterprise Resource Planning systems represent substantial organizational investments, yet many organizations struggle to realize expected benefits after implementation. This research develops a decision intelligence framework specifically designed to maximize ERP value realization during the critical post-implementation phase. While extensive literature addresses ERP implementation challenges, significantly less attention focuses on extracting value after systems go live. Our framework integrates data analytics, organizational learning, and strategic decision-making into a cohesive approach that transforms ERP systems from operational tools into strategic assets. Through analysis of post-implementation patterns across multiple organizations, we identify key decision points where intelligent interventions dramatically improve value capture. The …

Erp As A Digital Backbone: Redefining Enterprise Systems For Continuous Value Creation, Manikantha Varaprasad Inakollu

Computer Science and Engineering Faculty Publications

Enterprise Resource Planning systems have evolved from transactional processing tools into strategic digital backbones that orchestrate organizational value creation. This research examines how modern ERP implementations transcend traditional operational efficiency goals to enable continuous innovation, real-time decision-making, and ecosystem integration. Through analysis of contemporary ERP architectures and their impact on organizational capabilities, we demonstrate that successful digital transformation requires reconceptualizing ERP not as a software package but as an adaptive infrastructure supporting diverse business models. Our findings reveal that organizations treating ERP as a digital backbone achieve 35% higher agility scores and 42% faster time-to-market for new capabilities compared to …

Image-Based Malware Classification On Noise Extraction, Venkata Sai Sathwik Nadella

Master's Projects

Any malicious software designed to cause harm or damage to a computer system can be termed as malware. One common form of malware is as executable files. Such files are often used as a delivery mechanism for malware since they can be easily disguised as legitimate software and can be executed without raising suspicion. They are often used to exploit vulnerabilities in software, allowing malware to bypass security measures and gain access to sensitive information.

There are several methods used to detect malware in executable files, including Signaturebased detection, Behavioral-based detection, Heuristic-based detection, Sandboxing, Machine Learning and Artificial Intelligence (AI). …

Image-Based Malware Detection Using Convolutional Neural Network Techniques, Brandon Palomino

Master's Projects

In this study, we delve into the realm of malware detection and classification, leveraging the capabilities of different Convolutional Neural Networks (CNNs). Our approach involves transforming executable files into image formats and subsequently applying advanced CNN techniques for image recognition. The study emphasizes the use of two distinct CNN architectures: a traditional CNN model and a modified CNN variant known as a convolutional recurrent neural network (CRNN), each with unique structural and functional attributes. To effectively train these models, we adopt a transfer learning strategy, utilizing pre-existing CNN models that have been extensively trained on large-scale image datasets. This methodology …

Estimating Air Pollution Levels Using Machine Learning, Srujay Rao Devaraneni

Master's Projects

Air pollution has emerged as a substantial concern, especially in developing countries worldwide. An important aspect of this issue is the presence of PM2.5. Air pollutants with a diameter of 2.5 or less micrometers are known as PM2.5. Due to their size, these particles are a serious health risk and can quickly infiltrate the lungs, leading to a variety of health problems. Due to growing concerns about air pollution, technology like automatic air quality measurement can offer beneficial assistance for both personal and business decisions. This research suggests an ensemble machine learning model that can efficiently replace the standard air …

Efficient Gpu Implementation Of Automatic Differentiation For Computational Fluid Dynamics, Mohammad Zubair, Desh Ranjan, Aaron Walden, Gabriel Nastac, Eric Nielsen, Boris Diskin, Marc Paterno, Samuel Jung, Joshua Hoke Davis

Computer Science Faculty Publications

Many scientific and engineering applications require repeated calculations of derivatives of output functions with respect to input parameters. Automatic Differentiation (AD) is a method that automates derivative calculations and can significantly speed up code development. In Computational Fluid Dynamics (CFD), derivatives of flux functions with respect to state variables (Jacobian) are needed for efficient solutions of the nonlinear governing equations. AD of flux functions on graphics processing units (GPUs) is challenging as flux computations involve many intermediate variables that create high register pressure and require significant memory traffic because of the need to store the derivatives. This paper presents a …

Max Fit Event Management With Salesforce, Akshay Dagwar

Electronic Theses, Projects, and Dissertations

MAX FIT Gym is looking for an event management software program to help manage activities very efficiently, along with attendees and environmental statistics. The event management program is developed and deployed using the Salesforce platform. MAX FIT can efficiently create, edit, and remove events and send email alerts to clients. This task operated on opportunities captured under MAX FIT, including all clients, and prepared information in the Salesforce cloud. This also includes product inventory with various varieties of protein products, and business owners can also add more products to their inventory. In the event management program, the event addresses within …

Energy-Efficient Hmac For Wireless Communications, Cesar Enrique Castellon Escobar

UNF Graduate Theses and Dissertations

This thesis introduces the Farming Lightweight Protocol (FLP) optimized for energy-restricted environments that depend upon secure communication, such as multi-robot information gathering systems within the vision of ``smart'' agriculture. FLP uses a hash-based message authentication code (HMAC) to achieve data integrity. HMAC implementations, resting upon repeated use of the SHA256 hashing operator, impose additional resource requirements and thus also impact system availability. We address this particular integrity/availability trade-off by proposing an energy-saving algorithmic engineering method on the internal SHA256 hashing operator. The energy-efficient hash is designed to maintain the original security benefits yet reduce the negative effects on system availability. …