Statistical, Nonlinear, and Soft Matter Physics Commons^™

Reducing Food Scarcity: The Benefits Of Urban Farming, S.A. Claudell, Emilio Mejia

Journal of Nonprofit Innovation

Urban farming can enhance the lives of communities and help reduce food scarcity. This paper presents a conceptual prototype of an efficient urban farming community that can be scaled for a single apartment building or an entire community across all global geoeconomics regions, including densely populated cities and rural, developing towns and communities. When deployed in coordination with smart crop choices, local farm support, and efficient transportation then the result isn’t just sustainability, but also increasing fresh produce accessibility, optimizing nutritional value, eliminating the use of ‘forever chemicals’, reducing transportation costs, and fostering global environmental benefits.

Imagine Doris, who is …

Combined Risk Based Inspection And Fault Tree Analysis For Repetitive 3-Phase Line Piping Leakage At West Java Offshore Topside Facility, Dona Yuliati, Akhmad Herman Yuwono, Datu Rizal Asral, Donanta Dhaneswara

Journal of Materials Exploration and Findings

Hydrocarbon releases might result in serious consequences in various aspects. In addition to the contribution to environmental pollution, repetitive leakages need high repair costs. This study aim is to minimize potential repetitive leakage for other typical 3-phase piping systems. We conducted the risk assessment by adopting Risk Based Inspection (RBI) API 581 to identify risk level, calculating piping lifetime, recommended inspection plan and mitigations. The most relevant root causes can be obtained through quantitative Fault Tree Analysis (FTA). Observation and investigation was taken from eight 3-phase piping systems that experienced repetitive leakages. It has been found that the risk level …

Nitrogen Gas Quenching Pressure Effect On Bs S155 Alloy Steel In Vacuum Furnace, Agus Mulyadi Hasanudin, Eddy Sumarno Siradj

Journal of Materials Exploration and Findings

The production of metal and alloy products requires the use of heat treatment, when during the heat treatment process, quenching is a crucial step. The quenching medium can be anything from water, a salt bath, oil, air and gas. In a vacuum furnace, pressurized gas, most frequently nitrogen (N₂) gas, serves as one of the quenching mediums. One of the drawbacks of the quenching process is the distortion and dimensional change of the parts. This paper aims to investigate the influence of nitrogen gas quenching pressure on the distortion and dimensional change of aerospace actuator gear planet parts …

Aspects Of Stochastic Geometric Mechanics In Molecular Biophysics, David Frost

All Dissertations

In confocal single-molecule FRET experiments, the joint distribution of FRET efficiency and donor lifetime distribution can reveal underlying molecular conformational dynamics via deviation from their theoretical Forster relationship. This shift is referred to as a dynamic shift. In this study, we investigate the influence of the free energy landscape in protein conformational dynamics on the dynamic shift by simulation of the associated continuum reaction coordinate Langevin dynamics, yielding a deeper understanding of the dynamic and structural information in the joint FRET efficiency and donor lifetime distribution. We develop novel Langevin models for the dye linker dynamics, including rotational dynamics, based …

When To Hold And When To Fold: Studies On The Topology Of Origami And Linkages, Mary Elizabeth Lee

Doctoral Dissertations

Linkages and mechanisms are pervasive in physics and engineering as models for a
variety of structures and systems, from jamming to biomechanics. With the increase
in physical realizations of discrete shape-changing materials, such as metamaterials,
programmable materials, and self-actuating structures, an increased understanding
of mechanisms and how they can be designed is crucial. At a basic level, linkages
or mechanisms can be understood to be rigid bars connected at pivots around which
they can rotate freely. We will have a particular focus on origami-like materials, an
extension to linkages with the added constraint of faces. Self-actuated versions typ-
ically start …

Langevin Dynamic Models For Smfret Dynamic Shift, David Frost, Keisha Cook Dr, Hugo Sanabria Dr

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

A Model For The Multi-Virus Contact Process, Xu Huang

Rose-Hulman Undergraduate Mathematics Journal

We study one specific version of the contact process on a graph. Here, we allow multiple infections carried by the nodes and include a probability of removing nodes in a graph. The removal probability is purely determined by the number of infections the node carries at the moment when it gets another infection. In this paper, we show that on any finite graph, any positive value of infection rate $\lambda$ will result in the death of the process almost surely. In the case of $d$-regular infinite trees, We also give a lower bound on the infection rate in order for …

Quantifying Temperature-, Pressure-, And Nuclear Quantum Effects On Hydrophobic And Hydrophilic Water-Mediated Interactions, Justin T. Engstler

Dissertations, Theses, and Capstone Projects

Water-mediated interactions (WMIs) are responsible for diverse processes in aqueous solutions, including protein folding and nanoparticle aggregation. WMI may be affected by changes in temperature and pressure, and hence, they can alter chemical/physical processes that occur in aqueous environments. Traditionally, attention has been focused on hydrophobic interactions while, in comparison, the role of hydrophilic and hybrid (hydrophobic–hydrophilic) interactions have been mostly overlooked. Here, we study the role of T and P on the WMI between nanoscale (i) hydrophobic–hydrophobic, (ii) hydrophilic–hydrophilic, and (iii) hydrophilic–hydrophobic pairs of (hydroxylated/non-hydroxylated) graphene-based surfaces. We find that hydrophobic, hydrophilic, and hybrid interactions are all sensitive to …

Bacterial Motion And Spread In Porous Environments, Yasser Almoteri

Dissertations

Micro-swimmers are ubiquitous in nature from soil and water to mammalian bodies and even many technological processes. Common known examples are microbes such as bacteria, micro-algae and micro-plankton, cells such as spermatozoa and organisms such as nematodes. These swimmers live and have evolved in multiplex environments and complex flows in the presence of other swimmers and types, inert particles and fibers, interfaces and non-trivial confinements and more. Understanding the locomotion and interactions of these individual micro-swimmers in such impure viscous fluids is crucial to understanding the emergent dynamics of such complex systems, and to further enabling us to control and …

Deformations Of Geometrically Frustrated Elastic Sheets, Meng Xin

Doctoral Dissertations

The wrinkling and buckling of thin solids are common phenomena in our daily life and can be observed in many situations, such as crumpled papers, stretched plastics, compressed metals, clothes on our bodies and even furrowed human skin. Understanding of these phenomena has therefore long drawn interest of scholars. In this thesis, we discuss two buckling problems numerically and analytically. First, we study the wrinkling mechanism of stretched sheets with clamped edges. A central puzzle underlying this canonical example of “tensional wrinkling” has been the origin of compressive stress, which eventually leads to buckling instability. We elucidate the source of …

Experimental And Computational Aerodynamic Studies Of Axially-Oriented Low-Fineness-Ratio Cylinders, Forrest Miller

Mechanical & Aerospace Engineering Theses & Dissertations

For the successful completion of atmospheric entry, descent, and landing (EDL) missions, a body geometry must be selected which provides favorable dynamic aerodynamic properties. The types of experimental facilities capable of collecting information on these properties are limited; however, their numbers are growing thanks to the continued work by the aerodynamics community. NASA Langley Research Center (LaRC) is conducting dynamic aerodynamic testing using a subsonic magnetic suspension and balance system (MSBS), with the end goal of implementing a supersonic MSBS facility at NASA Glenn Research Center. MSBSs are also currently used at the Institute of Fluid Science (IFS) at Tohoku …

Tardys Quantifiers: Extracting Temporal And Reversible Dynamical Symmetries, Nhat Vu Minh Nguyen, Arjendu K. Pattanayak, Andres Aragoneses

2023 Symposium

One of the great challenges in complex and chaotic dynamics is to reveal the details of its underlying determinism. This can be manifest in the form of temporal correlations or structured patterns in the dynamics of a measurable variable. These temporal dynamical structures are sometimes a consequence of hidden global symmetries. Here we identify the temporal (approximate) symmetries of a semiconductor laser with external optical feedback, based on which we define the Temporal And Reversible DYnamical Symmetry (TARDYS) quantifiers to evaluate the relevance of specific temporal correlations in a time series. We show that these symmetries are also present in …

Effective Non-Hermiticity And Topology In Markovian Quadratic Bosonic Dynamics, Vincent Paul Flynn

Dartmouth College Ph.D Dissertations

Recently, there has been an explosion of interest in re-imagining many-body quantum phenomena beyond equilibrium. One such effort has extended the symmetry-protected topological (SPT) phase classification of non-interacting fermions to driven and dissipative settings, uncovering novel topological phenomena that are not known to exist in equilibrium which may have wide-ranging applications in quantum science. Similar physics in non-interacting bosonic systems has remained elusive. Even at equilibrium, an "effective non-Hermiticity" intrinsic to bosonic Hamiltonians poses theoretical challenges. While this non-Hermiticity has been acknowledged, its implications have not been explored in-depth. Beyond this dynamical peculiarity, major roadblocks have arisen in the search …

The Future Is Now In Twisted Coil Polymer Actuators (Tcpa), Ryan Ronquillo

Electronic Theses and Dissertations

This thesis aimed to fabricate and test twisted coiled polymer actuators (TCPA) to understand the mechanical and thermal aspects of this artificial muscle fiber. The purpose of this thesis was to find a linear relationship using the LVDT sensor, fabricating TCPA fibers, and interpreting the data. The project tested whether nylon/polymer could be used as a better artificial muscle fiber.

This research accomplished three goals: (1) designing and fabricating a system capable of creating supercoiled muscle fibers consistently, (2) calibrating the Linear Variable Differential Transformer (LVDT) and Core, and (3) analyzing/interpreting the data of the Twisted Coiled Polymer Actuators (TCPA) …

Path Integral Monte Carlo For Entanglement In Bosonic Lattices At T = 0, Emanuel Casiano-Diaz

Doctoral Dissertations

Path-Integral Monte Carlo Worm Algorithm is one of many Quantum Monte Carlo (QMC) methods that serve as powerful tools for the simulation of quantum many-body systems. Developed in the late 90’s, this algorithm has been used with great success to study a wide array of physical models where exact calculation of observables is not possible due to the exponential size of the Hilbert space. One type of systems that have eluded PIMC-WA implementation are lattice models at zero temperature, which are of relevance in experimental settings, such as in optical lattices of ultra-cold atoms. In this thesis, we develop a …

Black Hole Entropy In Ads/Cft And The Schwinger-Keldysh Formalism, Luke Mrini

Undergraduate Honors Theses

The Schwinger-Keldysh formalism for non-equilibrium field theory provides valuable tools for studying the black hole information loss paradox. In particular, there exists a Noether-like procedure to obtain the entropy density of a system by a discrete Kubo-Martin-Schwinger (KMS) variation of the action. Here, this Noether-like procedure is applied to the boundary action of an asymptotically anti-de Sitter (aAdS) black hole spacetime in maximally extended Kruskal coordinates. The result is the Kubo formula for shear viscosity, which is known in theories with an Einstein gravity dual to have a universal, constant ratio with the entropy density and is proportional to the …

Modelling Cell Population Growth, Mahmood Mazarei

Electronic Thesis and Dissertation Repository

The growth of biological matter, e.g., tumor invasion, depends on various factors, mainly the tissue’s mechanical properties, implying elasticity, stiffness, or apparent viscosity. These properties are impacted by the characteristics of the tissue’s extracellular matrix and constituent cells, including, but not limited to, cell membrane stiffness, cell cytoskeleton mechanical properties, and the intensity and distribution of focal adhesions over the cell membrane. To compute and study the mechanical properties of tissues during growth and confluency, a theoretical and computational framework, called CellSim3D, was developed in our group based on a three-dimensional kinetic division model.

In this work, CellSim3D is …

Analysis And Methodology Of Helical And Flexible Homopolymer Monte Carlo Simulations, Nathan Roberts

Honors College Theses

The purpose of my work is to analyze the results of Monte Carlo simulations of various types of polymers: a helical homopolymer and a flexible homopolymer. Specific applications of Monte Carlo polymer simulations and parallel tempering replica exchanges are presented. Using temporal analysis, I aim to measure the efficiency of each type of simulation as it relates to equilibration time. For the helical homopolymer model, equilibration time is expanded upon to analyze the rate of structure generation and relevant hyper-phase diagram. Stable states for helical homopolymers will use data generated from parallel tempering replica exchange Monte Carlo simulations created by …

One-Dimensional And Two-Dimensional Simulations Of Helical Homopolymers: A Comparative Analysis Of Energy Stabilization And Efficiency​, Nathan Roberts, Matthew Hooks

Scholars Week

The purpose of our work is to analyze the results of a two-dimensional parallel tempering Monte Carlo simulation of a coarse-grained helical homopolymer. The two-dimensional simulation allows Hamiltonian exchanges across both temperature and torsion values, while the one-dimensional simulation exclusively exchanges across temperature values. The genesis of each simulation is defined by a randomly configured polymer; as time progresses, randomly generated movements of monomers decrease the structure’s energy until equilibrium is reached. Equilibrium is determined by finding the absolute minimum of the data series, computing the mean of all remaining data, and finding the intersection between the rolling average and …

Source Data For Xueyan Feng, Michael S. Dimitriyev & Edwin L. Thomas, "Soft, Malleable Double Diamond Twin", Xueyan Feng, Michael S. Dimitriyev, Edwin L. Thomas

Data and Datasets

Source data and code for Xueyan Feng, Michael S. Dimitriyev & Edwin L. Thomas, "Soft, malleable double diamond twin"

Supplementary Code For "Chain Trajectories, Domain Shapes And Terminal Boundaries In Block Copolymers", Benjamin R. Greenvall, Michael S. Dimitriyev, Gregory M. Grason

Data and Datasets

Supplementary code used for the publication "Chain trajectories, domain shapes and terminal boundaries in block copolymers" by Benjamin R. Greenvall, Michael S. Dimitriyev, and Gregory M. Grason. Includes code for extracting and analyzing polar order and chain trajectories from self-consistent field calculations of block copolymers.

A High-Precision Electron Emission Model: Computational Methods For Nanoscale Structures, Alister J. Tencate

Graduate Research Theses & Dissertations

The high-intensity, high-brightness and precision frontiers for charged particle beams are an increasingly important focus for study. Electron microscopy has demonstrated high quality beams from a single nanotip emitter, and cathodes of structured nanoscale arrays show promise as ultracold electron sources. Optimization of the cathode design for precision applications necessitates a detailed treatment of the interplay between the structure geometry, quantum mechanical emission mechanism, and electromagnetic interactions between the emitted electrons and the boundary interface. This dissertation details the numerical tools developed to simulate these processes efficiently with enough fidelity to be accurate even in the ultracold regime.

Conventional simulation …

Long-Range And Chaotic Active Mixing Of Swimming Microbes In A Vortex Chain Flow, Nghia Le

Honors Theses

We present experiments studying the motion and active mixing of swimming mi- crobes in laminar, vortex-dominated fluid flows. We are testing a theory that predicts the existence of swimming invariant manifolds (SwIMs) - invisible, one-way barriers blocking the paths of self-propelled tracers in the flow in one direction. We also pro- pose that the SwIMs together can form chute structures in three-dimensional phase space that facilitate cross-vortex transport of the microbes. We also observe evidence of how these structures promote long-range transport at different non-dimensional velocities (microbe’s velocity relative to flow velocity). Long-range transport is quan- tified by measuring the …

Mechanisms Of Emulsion Destabilization: An Investigation Of Surfactant, Stabilizer, And Detergent Based Formulations Using Diffusing Wave Spectroscopy, Jordan N. Nowaczyk

Theses and Dissertations

Conventional approaches for studying emulsions, such as microscopy and macroscopic phase tracking, present challenges when it comes to establishing detailed mechanistic descriptions of the impact of emulsifier and stabilizer additives. Additionally, while a combination of sizing methods and macroscopic phase tracking can provide insights into droplet size changes and concentration, the use of multiple measurements can be cumbersome and error-prone. It is the focus of this work, to present a new method for studying water in oil (W/O) emulsions that involves using diffusing wave spectroscopy (DWS) to examine the impact of three different surface stabilizing additives at varying concentrations. By …