Analytical Chemistry Commons^™

Protein Stability In Solution And In The Gas Phase., Yousef Haidar

Electronic Thesis and Dissertation Repository

Electrospray Ionization mass spectrometry (ESI-MS) is widely used for probing proteins, yet many aspects of this technique remain elusive. Using MS, ion mobility spectrometry (IMS), and circular dichroism (CD) spectroscopy, this thesis sheds light on the stability differences of proteins in the gas phase and solution. After a general introduction (Chapter 1), Chapter 2 scrutinizes some aspects of native ESI. Our data highlight the significance of cone voltage in maintaining a native-like fold and show the advantage of using NH₄Ac in protein experiments. Chapter 3 focuses on hydrogen/deuterium exchange (HDX)-MS. Several studies have reported that D₂O …

Synchrotron Study Of Phase Transition And Heterostructures In Metal Oxide Semiconductors, Bingyu Dong

Electronic Thesis and Dissertation Repository

Transition metal oxides, including titanium dioxide (TiO₂), zinc oxide (ZnO) and Tin dioxide (SnO₂) are widely recognized semiconducting photocatalysts. This project engages in a detailed examination of the phase transition of TiO₂ and the synthesis of heterostructured metal oxides using an eco-friendly method of ball-milling. A variety of spectroscopy and microscopy techniques have been used to analyze the products. Synchrotron-based techniques: X-ray Absorption near-edge spectroscopy (XANES), X-ray Emission Spectroscopy and X-ray excited optical luminescence (XEOL) can demonstrate the local structure and bonding. The finding highlights a phase transition in TiO₂ and the formation of …

The Effect Of Hydrogen Peroxide On The Corrosion Dynamics Of Carbon Steel, Kwang Soak Gabriel O'Donnell

Electronic Thesis and Dissertation Repository

The Used Fuel Container (UFC) is a key barrier in Canada’s nuclear fuel disposal plan. Understanding the radiation-induced corrosion of the carbon steel (CS) vessel is critical for predicting the long-term integrity of the UFC. Developing a mechanistic understanding of CS corrosion and the effect of solution parameters is essential.

This work investigates the effects of H₂O₂, the key radiolytic oxidant, on CS corrosion dynamics in small, stagnant solutions. Elementary processes are identified, corrosion rates are calculated, and the effects of H₂O₂ concentration are investigated. Corrosion was studied by quantifying the concentrations of …

Investigating Novel Luminescent Materials Towards Applications In Light Emitting Electrochemical Cells, Kenneth Chu

Electronic Thesis and Dissertation Repository

The search for new and better luminescent materials is becoming increasingly important, as there are significant cost-savings in using luminophores that are brighter and more efficient. Carbon quantum dots (CQDs) and other luminescent materials such as Pt-Ag nanoclusters and TADF compounds are an extremely appealing alternative to existing light-emitting materials, as they are low-cost, easy to synthesize, and non-toxic.

This thesis explores the properties and performance of different luminescent materials to be used in light-emitting electrochemical cells (LECs). In this work, we focused on LECs as their low cost and ease of fabrication aligns well with the ethos of CQDs …

Use Of Electrochemical Techniques And Statistical Analysis To Investigate The Pitting Probability Of Copper, Sina Matin

Electronic Thesis and Dissertation Repository

The development of a safe permanent disposal plan is essential for the long-term disposal of used fuel bundles. Nuclear Waste Management Organization (NWMO) has been investigating the deep geologic disposal of nuclear waste which offers the optimum passive safety system with a negligible probability of release of radionuclides into the environment.

The proposed used fuel containers (UFC) for the permanent disposal of high-level nuclear waste in Canada is comprised of a carbon steel vessel coated with a 3 mm corrosion-resistant copper layer deposited using a combination of electrodeposition and cold spray deposition. Although copper is often considered to be thermodynamically …

Characterization Of Deposited Copper Oxide Films On Copper Substrates, Millicent Castillo

Electronic Thesis and Dissertation Repository

The deposition of copper oxide films on copper substrates was investigated by the electrochemical, thermal, and hydrothermal oxidation of copper. The formed oxides were characterized using various surface analytical techniques to determine the film’s morphology, composition, and thickness. The results show that by growing oxides electrochemically, a duplex layer composing of CuO and Cu₂O film was formed on the copper surface, having characteristics of being porous and possessing needle-like structures. An oxide film composed of CuO and Cu₂O, which shows minimal porosity and possess mixtures of crystalline and non-crystalline structures, is formed on the copper surface …

Near-Ir Laser Ablation Of Simulated Radiologically Contaminated Oxides On Carbon Steel Feeder Pipes, Thao Viet Do

Electronic Thesis and Dissertation Repository

As nuclear power plants age and retire from service, many countries face significant challenges concerning the safe long-term storage and disposal of large volumes of low and intermediate level radioactive wastes (L&ILW). The volumes of metallic waste are of particular concern, as when metal corrodes it produces hydrogen that could lead to pressure build-up in interim storage and disposal. In Canada, a significant fraction of the metallic wastes for Canada Deuterium Uranium (CANDU) nuclear reactors are out-of-core reactor components, such as carbon steel (CS) feeder pipes. The radioactive contamination is expected to be largely confined to the surface oxide layers …

Developing Carbon Quantum Dots As A Luminescent Material And Revisiting Ecl And Led Absolute Measurement Methods, Jonathan Ralph Adsetts

Electronic Thesis and Dissertation Repository

Luminescent materials play increasingly important roles in our lives. Improvements in these materials’ quantum efficiencies (QEs), costs and toxicity can greatly reduce the power consumption, price and environmental damage to the planet, respectively. Carbon quantum dots (CQDs) and luminescent materials exhibiting thermally activated delayed fluorescence (TADF) are two interesting materials in these aspects. Furthermore, measurements on electrochemiluminescence (ECL) and electroluminescence of these luminescent materials can quickly evaluate their performance for many applications. In this thesis, controlled CQD syntheses are revealed beneficial to luminescent materials applications. Their film ECL demonstrated relatively stable anionic and cationic radicals leading to high emission at …

Conformational Dynamics And Aggregation Of Thermally Stressed Proteins Studied By Hydrogen/Deuterium Exchange Mass Spectrometry, Nastaran Nosrat Tajoddin

Electronic Thesis and Dissertation Repository

Proteins perform various biological functions, e.g., as enzymes or transporters. In addition to naturally occurring proteins, the use of protein therapeutic drugs for treating cancer and other diseases is a rapidly growing area. A thorough biophysical characterization of proteins and protein therapeutics opens the door to a more comprehensive understanding of their role in health and disease. This dissertation aims to expand the capabilities of an existing technique (Hydrogen Deuterium Exchange Mass Spectrometry, HDX-MS), which is widely used for probing protein structure and dynamics. Conventionally, HDX-MS experiments are performed as a function of labelling time. Here we aim to establish …

Investigating The Mechanism Of Protein And Peptide Electrospray Ionization, Elnaz Aliyari

Electronic Thesis and Dissertation Repository

Electrospray ionization (ESI) mass spectrometry (MS) is widely used for the detection and characterization of various analytes. However, many fundamental aspects of the ESI process remain poorly understood. Using molecular dynamics (MD) simulations, MS, and ion mobility spectrometry (IMS), this thesis sheds light on the mechanisms whereby gaseous analyte ions are formed from highly charged ESI nanodroplets. After a general introduction (Chapter 1), Chapter 2 focuses on the ion evaporation mechanism (IEM), i.e., the ejection of analyte ions from the droplet surface. The IEM is well established for low MW compounds, but it has remained contentious whether this pathway is …

Natural Product Discovery And Mycotoxin Analysis Of Agricultural Endophytes And Pathogens, Jacob P. Walsh

Electronic Thesis and Dissertation Repository

This thesis focuses on the application of fungal natural product chemistry for the use of agriculture fungal pathogenesis research. The research in this work uses many analytical chemistry techniques and instruments such as HPLC, LC-MS/MS and NMR. In Chapter 2, a diagnostic fragmentation module was developed for the identification of compound classes in crude fungal extracts. This module identified the classes cytochalasins and chaetoglobosins from extracts of Penicillium, Chaetomium, and Xylaria. From these extracts a new chaetoglobosin was discovered and the module was implemented into the open-source software package MZmine 2.0. Chapter 3 discusses analytical chemistry techniques with the …

Analyzing Enhanced Electrochemiluminescence Of Novel Materials, Liuqing Yang

Electronic Thesis and Dissertation Repository

As a powerful analytical technique, electrochemiluminescence (ECL) has found wide applications in the fields of bioanalysis and light-emitting devices. However, many ECL materials sustain the shortcomings of low ECL efficiencies. To better design novel materials with ECL enhancement, it is essential to investigate and the enhanced ECL mechanisms. In this thesis, ECL enhancements of various novel materials were analyzed utilizing ECL-voltage curves, potential pulsing experiments, ECL and photoluminescence spectroscopies, and other characterization methods. Specifically, two graphene quantum dots (GQDs) with different heteroatom doping were designed and synthesized. Structural characterizations and spectroscopies demonstrated that the heteroatom doping could change the surface …

Humid Air Corrosion Of Carbon Steel And Stainless Steels Under Gamma Radiation: The Role Of Solution Volume And Radiolysis Products, Masoud Zakeri

Electronic Thesis and Dissertation Repository

As nuclear power plants age and their lifetimes are extended, it is critical to be able to accurately assess the long-term integrity of the reactor structural materials. A current investigation into a leak in the End Shield Cooling (ESC) System in Ontario Power Generation’s Pickering Unit 6 reactor has raised a potential issue. The corrosion of the supporting structural materials (carbon steel (CS) and stainless steel (SS)) in the presence of ionizing radiation in small stagnant solutions and humid air conditions therefore needs careful evaluation.

This project investigates the effect of water radiolysis and humid air radiolysis products (H_{2 …}

Characterization Of Extracellular Vesicles By Surface-Enhanced Raman Spectroscopy, Nina M. Culum

Electronic Thesis and Dissertation Repository

Extracellular vesicles (EVs), which are nanoscale vesicles secreted by cells into biofluids, are of research interest due to their roles in intercellular communication. EVs released from mesenchymal stromal cells (MSCs) have tremendous potential in cell-free regenerative medicine, while EVs released from diseased cells are being studied as biomarkers for minimally invasive and early disease detection. Presented in this thesis are gold nanohole arrays for the capture and sensitive detection of EVs by surface-enhanced Raman spectroscopy (SERS), a plasmonic technique capable of single molecule detection. Herein, we have characterized EVs released from MSCs and ovarian cancer cells, with a focus on …

The Design And Characterization Of Advanced Li Metal Anodes For Next-Generation Batteries, Keegan R. Adair

Electronic Thesis and Dissertation Repository

Li metal batteries have been widely regarded as the next stage of energy storage technology, which is enabled by the low electrochemical potential (-3.04 V vs. the standard hydrogen electrode) and high specific capacity (3860 mAh g^-1) of the Li metal anode. However, the implementation of Li metal anodes has been hindered by several issues including parasitic side reactions with electrolyte, large volume fluctuations, and dendrite formation which can cause short-circuits and safety issues. This thesis will cover some novel Li anode stabilization strategies while using advanced characterization techniques to provide critical information on the working mechanisms of …

The Analysis Of Ginsenosides In Ginseng Garden Soil, Karina Marie Kaberi

Electronic Thesis and Dissertation Repository

American ginseng (Panax quinquefolius L.) produces natural products called ginsenosides. The biggest challenge Ontario commercial ginseng farmers face is ginseng replant disease. To understand the function of ginseng root exudates, ginsenoside accumulation and persistence over time were investigated. Currently, no reliable ginsenoside specific extraction method, characterizing the changes in soil chemistry exists. Ginsenoside extraction protocol optimization was required to determine how ginsenoside composition changed over time. Overall, protocol optimization resulted in a 30% increase in yield of ginsenosides compared to previous extraction protocols. In the ginseng gardens, ginsenoside accumulation occurs slowly and did not reach significantly measurable amounts until the …

Copper Corrosion Dynamics Under Deep Geologic Repository Conditions, Masoumeh Naghizadeh

Electronic Thesis and Dissertation Repository

Canada’s plan for the permanent disposal of spent nuclear fuel involves a multiple-barrier system contained within a deep geologic repository (DGR). The key engineered barrier is the used fuel container (UFC), which is a copper-coated carbon steel vessel. The environments to which the copper coating will be exposed in the DGR are very different from those commonly encountered in copper corrosion studies. The copper (Cu) will be in contact with thin stagnant layers of water, and the corrosion system will be exposed to a continuous flux of γ-radiation. In the presence of γ-radiation, water and humid air decompose to redox-active …

Galvanic Corrosion Of Carbon Steel Coupled To Copper In Used Nuclear Fuel Containers, Lindsay J. Braithwaite

Electronic Thesis and Dissertation Repository

Deep geological containment of used nuclear fuel will rely on multiple engineered and natural barriers, two of which are the copper-coated used fuel containers and the compacted bentonite clay buffer boxes in which the containers will rest. This work focused on possible galvanic interactions between the copper coating and the steel substrate of the container, which may occur at a hypothetical through-coating defect. In the presence of various amounts of chloride, bentonite, and oxygen, corrosion of the copper/carbon steel couple was studied using electrochemical tests complemented by surface characterization and 3D X-ray imaging. We investigated the effects of copper-to-steel area …

High-Pressure Studies Of Flexible Metal-Organic Frameworks And Their Performance For Co2 Adsorption Using Infrared Spectroscopy, Boqing Li

Electronic Thesis and Dissertation Repository

Metal-organic frameworks (MOFs) are crystalline porous materials comprising metal ions/clusters and organic linkers. MOFs feature very large surface area and broad tunability, which distinguish them from traditional CO₂ adsorbents. High external pressure can significantly modify the framework structures and CO₂ adsorption properties of MOFs. MIL-53(Al) and NH₂-MIL-53(Al) exhibit excellent CO₂ affinity by forming hydrogen bonds between bridging OH groups and adsorbed CO₂. We used in situ infrared spectroscopy to investigate the high-pressure performance of their framework structures and CO₂ adsorption capacities. Diamond anvil cell was employed to apply high pressures in gigapascal …

Investigating The Corrosion Behaviour Of Ni-Based Alloys In Industrially Relevant Environments, Jeffrey D. Henderson

Electronic Thesis and Dissertation Repository

Typical engineering materials may experience high corrosion rates when exposed to aggressive service conditions. Such conditions include high concentrations of aggressive anions and oxidants, high solution acidity, and/or high temperatures. Alloys with high corrosion resistance may be selected to avoid material failure caused by corrosion, for example, Ni-Cr-Mo alloys. These alloys exhibit excellent corrosion resistance due to the formation of a passive oxide film, primarily containing Cr and Mo. However, film breakdown can result in localized corrosion, e.g., crevice corrosion. Localized corrosion processes can penetrate deep into the bulk alloy, threatening its integrity. While the oxide film and localized …

Electrochemiluminescence Of A Di-Boron Complex, Perovskite And Carbon Quantum Dots, Jonathan M. Wong

Electronic Thesis and Dissertation Repository

The electrochemiluminescence (ECL) of three novel materials was explored in this thesis. A di-boron complex exhibiting crystallization-induced blue shift emission was detected utilizing photoluminescence. This phenomenon was successfully observed in the annihilation pathway, resulting in crystallization-induced blue shift ECL. The effects of coreactant and crystallization-induced enhancements were distinguished utilizing two testing systems. Undoped and Mn-doped CsPbCl₃ perovskites were investigated, as the latter exhibits a dual emissive photoluminescence pathway due to host and dopant emission mechanics. It was discovered that the electrochemiluminescence of Mn-doped CsPbCl₃ proceeds through a triplet-triplet annihilation pathway. Furthermore, the relaxation of the electrochemically generated Mn-doped …

Fabricating Cu2znsns4, Cu2znsn(S,Se)4 And Cuin(S,Se)2 Light-Absorbing Thin Films For Low-Cost Solar Devices., Vaishnavi Raja

Electronic Thesis and Dissertation Repository

In this thesis, Cu₂ZnSnS₄ (CZTS), Cu₂ZnSn(S,Se)₄ (CZTSSe) and CuIn(S,Se)₂ (CISSe) thin-films have been optimized to use as the key light-absorbing and conversion layer for solar cells. CZTS nanocrystals (NCs) were solvothermally synthesized, etched with acetic acid and structurally analyzed using synchrotron spectroscopy. Electrodeposited CZTSSe films showed a non-ideal increase in sulfur with lower selenization temperature and post-process etching. Compositional studies of electrodeposited CISSe films confirmed the decrease in selenium after the acetic acid etching. Through PECMs and other conventional characterization techniques, it was determined that non-etched CZTSSe and CISSe solar devices performed better …

The Electrochemical And Corrosion Study Of Copper For Nuclear Waste Containers Under Deep Geological Disposal Conditions, Mengnan Guo

Electronic Thesis and Dissertation Repository

The proposed method for the safe disposal of Swedish, Finnish, and Canadian high-level nuclear waste (HLNW) is to isolate it in iron or steel containers with an outer copper (Cu) shell or coating and bury it in a deep geological repository (DGR). Copper has been selected as the corrosion barrier due to its stability in the aqueous anoxic environments anticipated in DGR conditions. The container will initially be exposed to humid aerated conditions which will evolve to cool and anoxic as radiation fields in the fuel decay and heat production ceases. When the DGR is cool and anoxic, sulphide (SH …

Effects Of Oxidative Modifications On The Structure And Non-Canonical Functions Of Cytochrome C Studied By Mass Spectrometry, Victor Yin

Electronic Thesis and Dissertation Repository

The peroxidase activity of the mitochondrial protein cytochrome c (cyt c) plays a critical role in triggering programmed cell death, or apoptosis. However, the native structure of cyt c should render this activity impossible due to the lack of open iron coordination sites at its heme cofactor. Despite its key biological importance, the molecular mechanisms underlying this structure-function mismatch remain enigmatic. The work detailed in this dissertation fills this knowledge gap by using mass spectrometry (MS) to decipher the central role that protein oxidative modifications and their associated structural changes play in activating the peroxidase function of cyt c …

Analysis Of Secondary Metabolites Biosynthesized By Pathogenic And Symbiotic Fungi Using High-Resolution Tandem Lc-Ms And Spectral Molecular Networking, Natasha Desrochers

Electronic Thesis and Dissertation Repository

Fungi from Canadian crops affect many aspects of agriculture. For example, ginseng root rot caused by Ilyonectria spp. is a major issue for farmers. Ilyonectria spp. make few reported natural products and it is not known if those products are unique to virulent species. PCA and molecular networking were applied to HRMS data to establish a distinct metabolomic profile of root rot pathogens, characterized by antifungal resorcyclic acid lactones (RALs). These likely protect Ilyonectria from other soil pathogens, which gives it the opportunity to infect ginseng root.

Molecular networking was also applied to fungal endophytes from fruit crops to identify …

Galvanic Corrosion Of Carbon Steel-Stainless Steel Welds, Mi Li

Electronic Thesis and Dissertation Repository

A water leak in one of the Canada Deuterium Uranium (CANDU) nuclear reactors could lead to galvanic corrosion between the materials of its supporting structures: carbon steel (CS) and stainless steel (SS). This project investigates the effects of physical and chemical solution parameters on the corrosion of galvanically coupled dissimilar CS-SS welds, with the aim of developing a corrosion dynamics model that can be used to assess the long-term integrity of the CANDU reactor structural materials with confidence. The studied parameters were solution pH, temperature, the presence or absence of γ-radiation and the cathode:anode surface area ratio. Multiple electrochemical techniques …

The Influence Of Radiolytically Produced Nitric Acid On The Corrosion Resistance Of Copper-Coated Used Nuclear Fuel Containers, Joseph P. Turnbull

Electronic Thesis and Dissertation Repository

In Canada, the proposed disposal method for high level nuclear waste involves sealing the waste in steel containers with a 3 mm outer copper coating and burying it in a deep geologic repository. However, the thickness of the container is significantly reduced making a reassessment of the influence of γ-radiation, emitted by the waste form, on container corrosion a potential licensing requirement. Under humid aerated conditions, the formation of nitric acid is expected, potentially resulting in the formation of droplets or wetted layers on the container surface. Currently available literature on the corrosion of copper in nitric acid does not …

Analysis Of Oxidatively Damaged Proteins By Mass Spectrometry, Vincent Saullo

Electronic Thesis and Dissertation Repository

As humans age, exposure to oxidative stress may induce protein degradation or aggregation; both resulting in loss of protein function. Protein oxidative damage remains a dominant pathology in many common ailments. To combat these pathologies, scientists must understand the nature of oxidative modifications and their effects on protein structure and dynamics. This work employs a range of mass spectrometry (MS) methods to characterize and analyze the effects of oxidative damage on the model protein myoglobin (Mb). Mb was oxidized using tert-butyl hydroperoxide, and the resulting modifications were characterized by top-down and bottom-up MS workflows. Hydrogen/deuterium exchange MS indicated elevated structural …

Methodologies For Metal Functionalization Of Phosphorus Based Photopolymer Networks, Vanessa Béland

Electronic Thesis and Dissertation Repository

Photopolymer networks with phosphonium cation, alkyl phosphine and olefin functionality were designed, synthesized and functionalized with metals by metathesis, coordination and hydrometallation reactions, respectively. The materials were strategically designed so that the metal functionalization step could be monitored and quantified. In some cases, this involved characterization by IR, NMR, or X-ray spectroscopic techniques, or by comparison to molecular analogues. It was found that by using a bi-functional photopolymer network, the material could be bi-metallized by orthogonal mechanisms. All metallized polymer networks were tested for their suitability as precursors to metal-containing ceramics. The polymers were pyrolyzed, and on analysis it was …

Synchrotron Radiation Analysis Of Daguerreotypes: Surface Characterization, Electrocleaning, And Preservation, Madalena S. Kozachuk

Electronic Thesis and Dissertation Repository

The first commercially viable photographic image, the daguerreotype, captured images from 1839 to 1860. While daguerreotypes provide a significant historical record of 19^th century individuals and events, deterioration now disfigures many of these images. This work describes the application of synchrotron radiation (SR) to the study of daguerreotypes.

Three goals were addressed in this thesis: 1) to utilize SR to further elucidate the physics and chemistry of the daguerreotype and how the surface varies with time, 2) to study the effects of the electrocleaning system on the daguerreotype surface, and 3) to propose suggestions to improve their preservation and …