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Full-Text Articles in Chemistry

Loading Microcolumns For The Separation Of Analytes From A Sample In The Millisecond Time Scale, David S. Hage, William A. Clarke Dec 2002

Loading Microcolumns For The Separation Of Analytes From A Sample In The Millisecond Time Scale, David S. Hage, William A. Clarke

David Hage Publications

The present invention generally relates to a microcolumn capable of separating an analyte from a sample in the millisecond time domain. The microcolumn is capable of such rapid separation by employing small column volumes that can tolerate medium to high flow rates. The invention also relates to a method of loading a microcolumn capable of separating an analyte from a sample in the millisecond time domain using plural injections of the packing material.


Monte Carlo Simulation Of Vapor–Liquid Binodal Of Water, S. Yoo, Xiao Cheng Zeng Nov 2002

Monte Carlo Simulation Of Vapor–Liquid Binodal Of Water, S. Yoo, Xiao Cheng Zeng

Xiao Cheng Zeng Publications

Among many popular potential models of water, the nonpolarizable four-site TIP4P potential is one of the more widely used. Recently, two new potential models of water on the basis of the TIP4P potential have been developed. One is the four-site Dang–Chang polarizable potential and another is the five-site TIP5P potential. The former is designed to describe not only bulk and interfacial properties of liquid water but also microclusters of water. The nonpolarizable TIP5P potential is the latest version in the TIP series from the Jorgensen group. Compared with the TIP4P potential, for example, the TIP5P potential gives a much improved …


Effect Of An Electric Field On The Surface Tension Of A Dipolar-Quadrupolar Fluid And Its Implication For Sign Preference In Droplet Nucleation, V.B. Warshavsky, Xiao Cheng Zeng Nov 2002

Effect Of An Electric Field On The Surface Tension Of A Dipolar-Quadrupolar Fluid And Its Implication For Sign Preference In Droplet Nucleation, V.B. Warshavsky, Xiao Cheng Zeng

Xiao Cheng Zeng Publications

The effect of a uniform electric field on interfacial properties of dipolar-quadrupolar fluids is investigated by using the density-functional theory. As in the case of purely dipolar fluids the (thermodynamic) surface tension is always altered by the external field, regardless of the direction of the field. However, unlike the purely dipolar fluids, for two given external fields with the same strength but exactly opposite direction the magnitude of variation in the surface tension is different. This apparent symmetry breaking by reversing the field direction suggests a new molecular mechanism to explain the phenomenon of sign preference in droplet formation on …


Creating Nanocavities Of Tunable Sizes: Hollow Helices, Bing Gong, Huaqiang Zeng, Jin Zhu, Lihua Yuan, Yaohua Han, Shizhi Cheng, Mako Furukawa, Ruben D. Parra, Audrey Y. Kovalevsky, Jeffrey L. Mills, Ewa Skrzypczak-Jankun, Suzana Martinovic, Richard D. Smith, Chong Zheng, Thomas Szyperski, Xiao Cheng Zeng Sep 2002

Creating Nanocavities Of Tunable Sizes: Hollow Helices, Bing Gong, Huaqiang Zeng, Jin Zhu, Lihua Yuan, Yaohua Han, Shizhi Cheng, Mako Furukawa, Ruben D. Parra, Audrey Y. Kovalevsky, Jeffrey L. Mills, Ewa Skrzypczak-Jankun, Suzana Martinovic, Richard D. Smith, Chong Zheng, Thomas Szyperski, Xiao Cheng Zeng

Xiao Cheng Zeng Publications

A general strategy for creating nanocavities with tunable sizes based on the folding of unnatural oligomers is presented. The backbones of these oligomers are rigidified by localized, threecenter intramolecular hydrogen bonds, which lead to well-defined hollow helical conformations. Changing the curvature of the oligomer backbone leads to the adjustment of the interior cavity size. Helices with interior cavities of 10 Å to >30 Å across, the largest thus far formed by the folding of unnatural foldamers, are generated. Cavities of these sizes are usually seen at the tertiary and quaternary structural levels of proteins. The ability to tune molecular dimensions …


Bulk And Interfacial Properties Of Quadrupolar Fluids, V.B. Warshavsky, Xiao Cheng Zeng Aug 2002

Bulk And Interfacial Properties Of Quadrupolar Fluids, V.B. Warshavsky, Xiao Cheng Zeng

Xiao Cheng Zeng Publications

We extend Teixeira and Telo da Gama’s density-functional approach [J. Phys.: Condens. Matter 3, 111 (1991)] to study the vapor–liquid phase equilibria and planar interfacial properties of quadrupolar fluids. The density profile, surface ordering, surface polarization, and surface tension of quadrupolar fluids are evaluated. Particular attention is given to the temperature and quadrupole-strength dependence. It is found that the interfacial molecular ordering can arise entirely due to the quadrupole–quadrupole interaction. It is also found that the bulk-phase properties of the quadrupolar fluids satisfy the law of correspondence states. The reduced surface potential and surface tension can be well correlated by …


A Model For Mechanochemical Transformations: Applications To Molecular Hardness, Instabilities, And Shock Initiation Of Reaction, Tadeusz Luty, Piotr Ordon, Craig J. Eckhardt Jul 2002

A Model For Mechanochemical Transformations: Applications To Molecular Hardness, Instabilities, And Shock Initiation Of Reaction, Tadeusz Luty, Piotr Ordon, Craig J. Eckhardt

Craig J. Eckhardt Publications

A basic theoretical structure for mechanochemical transformations based on prior models for solid-state reactions and HOMO–LUMO (highest occupied molecular orbital–lowest unoccupied molecular orbital) gap closing produces the concept of distortion-induced molecular electronic degeneracy (DIMED) of the highest occupied and lowest unoccupied molecular orbitals of an energetic molecule. Both intermolecular and intramolecular charge transfer are involved. The resulting distortion-induced local instability, a mechanochemical effect, leads to chemical transformations and can be analyzed by renormalization of the molecular hardness through the molecular deformation energy. Linear combinations of normal modes are shown to be useful for description of the mechanically induced reaction path. …


Heterogeneous Nucleation On Mesoscopic Wettable Particles: A Hybrid Thermodynamic/Density-Functional Theory, T.V. Bykov, Xiao Cheng Zeng Jul 2002

Heterogeneous Nucleation On Mesoscopic Wettable Particles: A Hybrid Thermodynamic/Density-Functional Theory, T.V. Bykov, Xiao Cheng Zeng

Xiao Cheng Zeng Publications

A hybrid thermodynamic and density-functional theory for heterogeneous nucleation on mesoscopic wettable particles is developed. The nonlocal density-functional theory (DFT) is on basis of the weighted-density approximation (WDA) of Tarazona. The model system consists of a Lennard-Jones (LJ) fluid and a 9–3 LJ wall for the solid particle. Effects of the droplet curvature and compressibility are accounted for in the theory. A by-product of this work is the calculation of the Tolman length using the WDA-DFT (Appendix A). Important characteristics of the heterogeneous nucleation, including the chemical potential of the liquid condensate, the free energy of droplet formation, and the …


Direct Haplotyping Of Kilobase-Size Dna Using Carbon Nanotube Probes, Adam T. Woolley, Chantal Guillemette, Chin Li Cheung, David E. Housman, Charles M. Lieber May 2002

Direct Haplotyping Of Kilobase-Size Dna Using Carbon Nanotube Probes, Adam T. Woolley, Chantal Guillemette, Chin Li Cheung, David E. Housman, Charles M. Lieber

Barry Chin Li Cheung Publications

We have implemented a method for multiplexed detection of polymorphic sites and direct determination of haplotypes in 10-kilobasesize DNA fragments using single-walled carbon nanotube (SWNT) atomic force microscopy (AFM) probes. Labeled oligonucleotides are hybridized specifically to complementary target sequences in template DNA, and the positions of the tagged sequences are detected by direct SWNT tip imaging. We demonstrated this concept by detecting streptavidin and IRD800 labels at two different sequences in M13mp18. Our approach also permits haplotype determination from simple visual inspection of AFM images of individual DNA molecules, which we have done on UGT1A7, a gene under study as …


Chiral Discrimination In Cyclodextrin Complexes Of Amino Acid Derivatives: Β-Cyclodextrin/N-Acetyl-L-Phenylalanine And N-Acetyl-D Phenylalanine Complexes, Jennifer M. Alexander, Joanna L. Clark, Tom J. Brett, John J. Stezowski Apr 2002

Chiral Discrimination In Cyclodextrin Complexes Of Amino Acid Derivatives: Β-Cyclodextrin/N-Acetyl-L-Phenylalanine And N-Acetyl-D Phenylalanine Complexes, Jennifer M. Alexander, Joanna L. Clark, Tom J. Brett, John J. Stezowski

John J. Stezowski Publications

In a systematic study of molecular recognition of amino acid derivatives in solid-state β-cyclodextrin (β-CD) complexes, we have determined crystal structures for complexes of β-cyclodextrin/N -acetyl-L-phenylalanine at 298 and 20 K and for N-acetyl-D-phenylalanine at 298 K. The crystal structures for the N-acetyl-L-phenylalanine complex present disordered inclusion complexes for which the distribution of guest molecules at room temperature is not resolvable; however, they can be located with considerable confidence at low temperature. In contrast, the complex with N-acetyl-D-phenylalanine is well ordered at room temperature. The latter complex presents an example of a complex in this series …


Applications Of Nmr To Structure-Based Drug Design In Structural Genomics, Robert Powers Apr 2002

Applications Of Nmr To Structure-Based Drug Design In Structural Genomics, Robert Powers

Robert Powers Publications

Structural genomics is poised to have a tremendous impact on traditional structure-based drug design programs. As a result, there is a growing need to obtain rapid structural information in a reliable form that is amenable to rational drug design. In this manner, NMR has been expanding and evolving its role in aiding the design process. A variety of NMR methodologies that cover a range of inherent resolution are described in the context of structure-based drug design in the era of structural genomics.


How Does Water Freeze Inside Carbon Nanotubes?, Kenichiro Koga, G.T. Gao, Hideki Tanaka, Xiao Cheng Zeng Jan 2002

How Does Water Freeze Inside Carbon Nanotubes?, Kenichiro Koga, G.T. Gao, Hideki Tanaka, Xiao Cheng Zeng

Xiao Cheng Zeng Publications

Phase behavior of quasi-one-dimensional water confined inside a carbon nanotube is studied in the thermodynamic space of temperature, pressure, and diameter of the cylindrical container. Four kinds of solid-like ordered structures—ice nanotubes—form spontaneously from liquid-like disordered phases at low temperatures. In the model system that comprises of TIP4P water molecules interacting with each other via short-range Lennard–Jones and long-range Coulomb site–site potentials under a periodic boundary condition in the axial direction, the phase change occurs either discontinuously or continuously depending on the path in the thermodynamic space. That the isotherms for a given diameter are found to be similar to …