Physical Sciences and Mathematics Commons^™

Analyzing Biomedical Datasets With Symbolic Tree Adaptive Resonance Theory, Sasha Petrenko, Daniel B. Hier, Mary A. Bone, Tayo Obafemi-Ajayi, Erik J. Timpson, William E. Marsh, Michael Speight, Donald C. Wunsch

Chemistry Faculty Research & Creative Works

Biomedical Datasets Distill Many Mechanisms Of Human Diseases, Linking Diseases To Genes And Phenotypes (Signs And Symptoms Of Disease), Genetic Mutations To Altered Protein Structures, And Altered Proteins To Changes In Molecular Functions And Biological Processes. It Is Desirable To Gain New Insights From These Data, Especially With Regard To The Uncovering Of Hierarchical Structures Relating Disease Variants. However, Analysis To This End Has Proven Difficult Due To The Complexity Of The Connections Between Multi-Categorical Symbolic Data. This Article Proposes Symbolic Tree Adaptive Resonance Theory (START), With Additional Supervised, Dual-Vigilance (DV-START), And Distributed Dual-Vigilance (DDV-START) Formulations, For The Clustering Of …

Environmental Dna Metabarcoding Of Pan Trap Water To Monitor Arthropod-Plant Interactions, Joshua H. Kestel, David L. Field, Philip W. Bateman, Nicole E. White, Karen L. Bell, Paul Nevill

Research outputs 2022 to 2026

Globally, the diversity of arthropods and the plants upon which they rely are under increasing pressure due to a combination of biotic and abiotic anthropogenic stressors. Unfortunately, conventional survey methods used to monitor ecosystems are often challenging to conduct on large scales. Pan traps are a commonly used pollinator survey method and environmental DNA (eDNA) metabarcoding of pan trap water may offer a high-throughput alternative to aid in the detection of both arthropods and the plant resources they rely on. Here, we examined if eDNA metabarcoding can be used to identify arthropods and plant species from pan trap water, and …

Dynamical Architectures Of S-Type Transiting Planets In Binaries. I. Target Selection Using Hipparcos And Gaia Proper Motion Anomalies, J. Zhang, L. M. Weiss, D. Huber, Eric L.N. Jensen, T. D. Brandt, K. Collins, D. M. Conti, H. Isaacson, P. Lewin, G. Marino, B. Massey, F. Murgas, E. Palle, D. J. Radford, H. M. Relles, G. Srdoc, C. Stockdale, T.-G. Tan, G. Wang

Physics & Astronomy Faculty Works

The effect of stellar multiplicity on planetary architecture and orbital dynamics provides an important context for exoplanet demographics. We present a volume-limited catalog of up to 300 pc of 66 stars hosting planets and planet candidates from Kepler, K2, and TESS with significant Hipparcos-Gaia proper motion anomalies, which indicates the presence of companions. We assess the reliability of each transiting planet candidate using ground-based follow-up observations, and find that the TESS Objects of Interest (TOIs) with significant proper anomalies show nearly four times more false positives due to eclipsing binaries compared to TOIs with marginal proper anomalies. In addition, we …

Light Curve And Hardness Tests For Millilensing In Grb 081122a, Grb 081126a, Grb 110517b, And Grb 210812a, Oindabi Mukherjee, Robert J. Nemiroff

Michigan Tech Publications, Part 2

Analyses are given on four recent gravitational millilensing claims on gamma-ray bursts (GRBs): GRB 081122A, GRB 081126A, GRB 110517B, and GRB 210812A. Two tests, a light curve similarity test and a hardness similarity test, compare different temporal sections of a single GRB to see if they are statistically similar. The hardness similarity test shows that the ratio between the second and the first emission episodes in each energy channel differed from the same ratio averaged over all energy channels at above 90 per cent confidence level in GRB 081122A. Additionally, the light curve similarity test applied to GRB 081122A, GRB …

Maximizing The Ai Revolution In Southeast Asia, Shoeb Kagda

Asian Management Insights

For that, the region must narrow the digital divide.

Superminds At Work: The Promise Of Human-Ai Collaboration, Thomas W. Malone

Asian Management Insights

Massachusetts Institute of Technology (MIT) Center for Collective Intelligence Director Professor Thomas W. Malone’s scholarship offers deep insights into the promise afforded by the synergies between human intelligence and technology. According to Professor Malone, the boundaries between human intellect and technological prowess are becoming increasingly blurred, but this may not be a bad thing for humankind. In Asian Management Insights’ inaugural Pulse Point interview, we get to learn more about the concept of ‘collective intelligence’, which explores how a partnership between humans and Artificial Intelligence (AI) can be catalysed to make ground-breaking advancements in addressing the wicked problems of our …

Knowledge Generation For Zero-Shot Knowledge-Based Vqa, Rui Cao, Jing Jiang

Research Collection School Of Computing and Information Systems

Previous solutions to knowledge-based visual question answering (K-VQA) retrieve knowledge from external knowledge bases and use supervised learning to train the K-VQA model. Recently pre-trained LLMs have been used as both a knowledge source and a zero-shot QA model for K-VQA and demonstrated promising results. However, these recent methods do not explicitly show the knowledge needed to answer the questions and thus lack interpretability. Inspired by recent work on knowledge generation from LLMs for text-based QA, in this work we propose and test a similar knowledge-generation-based K-VQA method, which first generates knowledge from an LLM and then incorporates the generated …

Revisiting The Markov Property For Machine Translation, Cunxiao Du, Hao Zhou, Zhaopeng Tu, Jing Jiang

Research Collection School Of Computing and Information Systems

In this paper, we re-examine the Markov property in the context of neural machine translation. We design a Markov Autoregressive Transformer (MAT) and undertake a comprehensive assessment of its performance across four WMT benchmarks. Our findings indicate that MAT with an order larger than 4 can generate translations with quality on par with that of conventional autoregressive transformers. In addition, counter-intuitively, we also find that the advantages of utilizing a higher-order MAT do not specifically contribute to the translation of longer sentences.

Simulated Annealing With Reinforcement Learning For The Set Team Orienteering Problem With Time Windows, Vincent F. Yu, Nabila Y. Salsabila, Shih-W Lin, Aldy Gunawan

Research Collection School Of Computing and Information Systems

This research investigates the Set Team Orienteering Problem with Time Windows (STOPTW), a new variant of the well-known Team Orienteering Problem with Time Windows and Set Orienteering Problem. In the STOPTW, customers are grouped into clusters. Each cluster is associated with a profit attainable when a customer in the cluster is visited within the customer's time window. A Mixed Integer Linear Programming model is formulated for STOPTW to maximizing total profit while adhering to time window constraints. Since STOPTW is an NP-hard problem, a Simulated Annealing with Reinforcement Learning (SARL) algorithm is developed. The proposed SARL incorporates the core concepts …

Errata: Water Main Break Rates In The Usa And Canada: A Comprehensive Study, Steven Barfuss

Reports

Page 5 – Major Finding 6 (change also made in text on Page 18):

Added “in the reported pipe inventory” to better clarify the percentage reduction

Page 6 – Major Finding 14 (change also made in text on Page 31):

Changed “six” to “five” years to explain the time elapsed between the 2018 and 2023 studies

Page 7 – Major Finding 28 (change also made in text on Page 46):

Added “percentage” to better clarify the percentage of acceptance

Page 8 – Section 1.1:

Updated “(WRF, 2017)” to “(Grigg, 2007)” and “(US Conference of Mayors, 2018)” to “(Anderson, 2018)”

Page …

3d Pictorial Representations Of O2- And Ho2 Compared To Dft Results, Tzu-Hsiang Huang, Joseph D. Alia

Chemistry Publications

The Linnett Double Quartet (LDQ) (1) and Bohr Orbit Bonding (BOB) (2) methods were used to accurately represent the spin density distribution for superoxide (O2 -) and hydroperoxyl radical (HO2). These structural pictures were superimposed on the spin density plot produced by DFT. The Valency Interaction Formula (VIF) method (3) was also applied to these molecules and it matched the NBOs from NBO analysis of DFT results. The interaction between O2 - and H2O were analyzed and the stronger basicity of the beta-spin electrons of superoxide was identified by looking at the LDQ structure and confirmed with NBO analysis. The …

Dna-Based Assay For Calorimetric Determination Of Protein Concentrations In Pure Or Mixed Solutions, Matthew W. Eskew, Patrick Reardon, Albert S. Benight

Chemistry Faculty Publications and Presentations

It was recently reported that values of the transition heat capacities, as measured by differential scanning calorimetry, for two globular proteins and a short DNA hairpin in NaCl buffer are essentially equivalent, at equal concentrations (mg/mL). To validate the broad applicability of this phenomenon, additional evidence for this equivalence is presented that reveals it does not depend on DNA sequence, buffer salt, or transition temperature (Tm). Based on the equivalence of transition heat capacities, a calorimetric method was devised to determine protein concentrations in pure and complex solutions. The scheme uses direct comparisons between the thermodynamic stability of a short …

Navigating Through Chaos, Hoong Chuin Lau

Asian Management Insights

How AI and optimisation models can strengthen supply chain resilience.

Possible Role Of Correlation Coefficients And Network Analysis Of Multiple Intracellular Proteins In Blood Cells Of Patients With Bipolar Disorder In Studying The Mechanism Of Lithium Responsiveness: A Proof-Concept Study, Keming Gao, Marzieh Ayati, Nicholas M. Kaye, Mehmet Koyutürk, Joseph R. Calabrese, Eric Christian, Hillard M. Lazarus, David Kaplan

Computer Science Faculty Publications and Presentations

Background: The mechanism of lithium treatment responsiveness in bipolar disorder (BD) remains unclear. The aim of this study was to explore the utility of correlation coefficients and protein-to-protein interaction (PPI) network analyses of intracellular proteins in monocytes and CD4+ lymphocytes of patients with BD in studying the potential mechanism of lithium treatment responsiveness. Methods: Patients with bipolar I or II disorder who were diagnosed with the MINI for DSM-5 and at any phase of the illness with at least mild symptom severity and received lithium (serum level ≥ 0.6 mEq/L) for 16 weeks were divided into two groups, responders (≥50% …

Numerical Simulations For Fractional Differential Equations Of Higher Order And A Wright-Type Transformation, Mariana Nacianceno, Tamer Oraby, Hansapani Rodrigo, Y. Sepulveda, Josef A. Sifuentes, Erwin Suazo, T. Stuck, J. Williams

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

In this work, a new relationship is established between the solutions of higher fractional differential equations and a Wright-type transformation. Solutions could be interpreted as expected values of functions in a random time process. As applications, we solve the fractional beam equation, fractional electric circuits with special functions as external sources, and derive d’Alembert’s formula for the fractional wave equation. Due to this relationship, we present two methods for simulating solutions of fractional differential equations. The two approaches use the interpretation of the Caputo derivative of a function as a Wright-type transformation of the higher derivative of the function. In …

Stopguess: A Framework For Public-Key Authenticated Encryption With Keyword Search, Tao Xiang, Zhongming Wang, Biwen Chen, Xiaoguo Li, Peng Wang, Fei Chen

Research Collection School Of Computing and Information Systems

Public key encryption with keyword search (PEKS) allows users to search on encrypted data without leaking the keyword information from the ciphertexts. But it does not preserve keyword privacy within the trapdoors, because an adversary (e.g., untrusted server) might launch inside keyword-guessing attacks (IKGA) to guess keywords from the trapdoors. In recent years, public key authenticated encryption with keyword search (PAEKS) has become a promising primitive to counter the IKGA. However, existing PAEKS schemes focus on the concrete construction of PAEKS, making them unable to support modular construction, intuitive proof, or flexible extension. In this paper, our proposal called “StopGuess” …

Screening Through A Broad Pool: Towards Better Diversity For Lexically Constrained Text Generation, Changsen Yuan, Heyan Huang, Yixin Cao, Qianwen Cao

Research Collection School Of Computing and Information Systems

Lexically constrained text generation (CTG) is to generate text that contains given constrained keywords. However, the text diversity of existing models is still unsatisfactory. In this paper, we propose a lightweight dynamic refinement strategy that aims at increasing the randomness of inference to improve generation richness and diversity while maintaining a high level of fluidity and integrity. Our basic idea is to enlarge the number and length of candidate sentences in each iteration, and choose the best for subsequent refinement. On the one hand, different from previous works, which carefully insert one token between two words per action, we insert …

Sigmadiff: Semantics-Aware Deep Graph Matching For Pseudocode Diffing, Lian Gao, Yu Qu, Sheng Yu, Yue Duan, Heng Yin

Research Collection School Of Computing and Information Systems

Pseudocode diffing precisely locates similar parts and captures differences between the decompiled pseudocode of two given binaries. It is particularly useful in many security scenarios such as code plagiarism detection, lineage analysis, patch, vulnerability analysis, etc. However, existing pseudocode diffing and binary diffing tools suffer from low accuracy and poor scalability, since they either rely on manually-designed heuristics (e.g., Diaphora) or heavy computations like matrix factorization (e.g., DeepBinDiff). To address the limitations, in this paper, we propose a semantics-aware, deep neural network-based model called SIGMADIFF. SIGMADIFF first constructs IR (Intermediate Representation) level interprocedural program dependency graphs (IPDGs). Then it uses …

Fixing Your Own Smells: Adding A Mistake-Based Familiarization Step When Teaching Code Refactoring, Ivan Wei Han Tan, Christopher M. Poskitt

Research Collection School Of Computing and Information Systems

Programming problems can be solved in a multitude of functionally correct ways, but the quality of these solutions (e.g. readability, maintainability) can vary immensely. When code quality is poor, symptoms emerge in the form of 'code smells', which are specific negative characteristics (e.g. duplicate code) that can be resolved by applying refactoring patterns. Many undergraduate computing curricula train students on this software engineering practice, often doing so via exercises on unfamiliar instructor-provided code. Our observation, however, is that this makes it harder for novices to internalise refactoring as part of their own development practices. In this paper, we propose a …

Ditmos: Delving Into Diverse Tiny-Model Selection On Microcontrollers, Xiao Ma, Shengfeng He, Hezhe Qiao, Dong Ma

Research Collection School Of Computing and Information Systems

Enabling efficient and accurate deep neural network (DNN) inference on microcontrollers is non-trivial due to the constrained on-chip resources. Current methodologies primarily focus on compressing larger models yet at the expense of model accuracy. In this paper, we rethink the problem from the inverse perspective by constructing small/weak models directly and improving their accuracy. Thus, we introduce DiTMoS, a novel DNN training and inference framework with a selectorclassifiers architecture, where the selector routes each input sample to the appropriate classifier for classification. DiTMoS is grounded on a key insight: a composition of weak models can exhibit high diversity and the …

T-Pickseer: Visual Analysis Of Taxi Pick-Up Point Selection Behavior, Shuxian Gu, Yemo Dai, Zezheng Feng, Yong Wang, Haipeng Zeng

Research Collection School Of Computing and Information Systems

Taxi drivers often take much time to navigate the streets to look for passengers, which leads to high vacancy rates and wasted resources. Empty taxi cruising remains a big concern for taxi companies. Analyzing the pick-up point selection behavior can solve this problem effectively, providing suggestions for taxi management and dispatch. Many studies have been devoted to analyzing and recommending hotspot regions of pick-up points, which can make it easier for drivers to pick-up passengers. However, the selection of pick-up points is complex and affected by multiple factors, such as convenience and traffic management. Most existing approaches cannot produce satisfactory …

Community Similarity Based On User Profile Joins, Konstantinos Theocharidis, Hady Wirawan Lauw

Research Collection School Of Computing and Information Systems

Similarity joins on multidimensional data are crucial operators for recommendation purposes. The classic ��-join problem finds all pairs of points within �� distance to each other among two ��-dimensional datasets. In this paper, we consider a novel and alternative version of ��-join named community similarity based on user profile joins (CSJ). The aim of CSJ problem is, given two communities having a set of ��-dimensional users, to find how similar are the communities by matching every single pair of users (a user can be matched with at most one other user) having an absolute difference of at most �� per …

Hypergraphs With Attention On Reviews For Explainable Recommendation, Theis E. Jendal, Trung Hoang Le, Hady Wirawan Lauw, Matteo Lissandrini, Peter Dolog, Katja Hose

Research Collection School Of Computing and Information Systems

Given a recommender system based on reviews, the challenges are how to effectively represent the review data and how to explain the produced recommendations. We propose a novel review-specific Hypergraph (HG) model, and further introduce a model-agnostic explainability module. The HG model captures high-order connections between users, items, aspects, and opinions while maintaining information about the review. The explainability module can use the HG model to explain a prediction generated by any model. We propose a path-restricted review-selection method biased by the user preference for item reviews and propose a novel explanation method based on a review graph. Experiments on …

Monocular Bev Perception Of Road Scenes Via Front-To-Top View Projection, Wenxi Liu, Qi Li, Weixiang Yang, Jiaxin Cai, Yuanhong Yu, Yuexin Ma, Shengfeng He, Jia Pan

Research Collection School Of Computing and Information Systems

HD map reconstruction is crucial for autonomous driving. LiDAR-based methods are limited due to expensive sensors and time-consuming computation. Camera-based methods usually need to perform road segmentation and view transformation separately, which often causes distortion and missing content. To push the limits of the technology, we present a novel framework that reconstructs a local map formed by road layout and vehicle occupancy in the bird's-eye view given a front-view monocular image only. We propose a front-to-top view projection (FTVP) module, which takes the constraint of cycle consistency between views into account and makes full use of their correlation to strengthen …

Meta-Interpretive Learning With Reuse, Rong Wang, Jun Sun, Cong Tian, Zhenhua Duan

Research Collection School Of Computing and Information Systems

Inductive Logic Programming (ILP) is a research field at the intersection between machine learning and logic programming, focusing on developing a formal framework for inductively learning relational descriptions in the form of logic programs from examples and background knowledge. As an emerging method of ILP, Meta-Interpretive Learning (MIL) leverages the specialization of a set of higher-order metarules to learn logic programs. In MIL, the input includes a set of examples, background knowledge, and a set of metarules, while the output is a logic program. MIL executes a depth-first traversal search, where its program search space expands polynomially with the number …

Conditional Neural Heuristic For Multiobjective Vehicle Routing Problems, Mingfeng Fan, Yaoxin Wu, Zhiguang Cao, Wen Song, Guillaume Sartoretti, Huan Liu, Guohua Wu

Research Collection School Of Computing and Information Systems

Existing neural heuristics for multiobjective vehicle routing problems (MOVRPs) are primarily conditioned on instance context, which failed to appropriately exploit preference and problem size, thus holding back the performance. To thoroughly unleash the potential, we propose a novel conditional neural heuristic (CNH) that fully leverages the instance context, preference, and size with an encoder–decoder structured policy network. Particularly, in our CNH, we design a dual-attention-based encoder to relate preferences and instance contexts, so as to better capture their joint effect on approximating the exact Pareto front (PF). We also design a size-aware decoder based on the sinusoidal encoding to explicitly …

On The Effects Of Information Asymmetry In Digital Currency Trading, Kwansoo Kim, Robert John Kauffman

Research Collection School Of Computing and Information Systems

We report on two studies that examine how social sentiment influences information asymmetry in digital currency markets. We also assess whether cryptocurrency can be an investment vehicle, as opposed to only an instrument for asset speculation. Using a dataset on transactions from an exchange in South Korea and sentiment from Korean social media in 2018, we conducted a study of different trading behavior under two cryptocurrency trading market microstructures: a bid-ask spread dealer's market and a continuous trading buy-sell, immediate trade execution market. Our results highlight the impacts of positive and negative trader social sentiment valences on the effects of …

Ur2m: Uncertainty And Resource-Aware Event Detection On Microcontrollers, Hong Jia, Young D. Kwon, Dong Ma, Nhat Pham, Lorena Qendro, Tam Vu, Cecilia Mascolo

Research Collection School Of Computing and Information Systems

Traditional machine learning techniques are prone to generating inaccurate predictions when confronted with shifts in the distribution of data between the training and testing phases. This vulnerability can lead to severe consequences, especially in applications such as mobile healthcare. Uncertainty estimation has the potential to mitigate this issue by assessing the reliability of a model's output. However, existing uncertainty estimation techniques often require substantial computational resources and memory, making them impractical for implementation on microcontrollers (MCUs). This limitation hinders the feasibility of many important on-device wearable event detection (WED) applications, such as heart attack detection. In this paper, we present …

T-Sciq: Teaching Multimodal Chain-Of-Thought Reasoning Via Large Language Model Signals For Science Question Answering, Lei Wang, Yi Hu, Jiabang He, Xing Xu, Ning Liu, Hui Liu, Heng Tao Shen

Research Collection School Of Computing and Information Systems

Large Language Models (LLMs) have recently demonstrated exceptional performance in various Natural Language Processing (NLP) tasks. They have also shown the ability to perform chain-of-thought (CoT) reasoning to solve complex problems. Recent studies have explored CoT reasoning in complex multimodal scenarios, such as the science question answering task, by fine-tuning multimodal models with high-quality human-annotated CoT rationales. However, collecting high-quality COT rationales is usually time-consuming and costly. Besides, the annotated rationales are hardly accurate due to the external essential information missed. To address these issues, we propose a novel method termed T-SciQ that aims at teaching science question answering with …

Transiam: Aggregating Multi-Modal Visual Features With Locality For Medical Image Segmentation, Xuejian Li, Shiqiang Ma, Junhai Xu, Jijun Tang, Shengfeng He, Fei Guo

Research Collection School Of Computing and Information Systems

Automatic segmentation of medical images plays an important role in the diagnosis of diseases. On single-modal data, convolutional neural networks have demonstrated satisfactory performance. However, multi-modal data encompasses a greater amount of information rather than single-modal data. Multi-modal data can be effectively used to improve the segmentation accuracy of regions of interest by analyzing both spatial and temporal information. In this study, we propose a dual-path segmentation model for multi-modal medical images, named TranSiam. Taking into account that there is a significant diversity between the different modalities, TranSiam employs two parallel CNNs to extract the features which are specific to …