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2018

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Full-Text Articles in Physical Sciences and Mathematics

Mechanism For Copper(Ii)-Mediated Disaggregation Of A Porphyrin J-Aggregate, M. Trapani, I. G. Occhiuto, R. Zagami, G. De Luca, M. A. Castriciano, A. Romeo, L. M. Scolaro, Robert F. Pasternack Dec 2018

Mechanism For Copper(Ii)-Mediated Disaggregation Of A Porphyrin J-Aggregate, M. Trapani, I. G. Occhiuto, R. Zagami, G. De Luca, M. A. Castriciano, A. Romeo, L. M. Scolaro, Robert F. Pasternack

Chemistry & Biochemistry Faculty Works

J-aggregates of anionic meso-tetrakis(4-sulfonatophenyl)porphyrin form at intermediate pH (2.3–3.1) in the presence of NiSO₄ or ZnSO₄ (ionic strength, I.S. = 3.2 M). These aggregates convert to monomeric porphyrin units via metallation with copper(II) ions. The kinetics for the disassembly process, as monitored by UV/vis spectroscopy, exhibits zeroth-order behavior. The observed zeroth-order rate constants show a two-term dependence on copper(II) ion concentrations: linear and second order. Also observed is an inverse dependence on hydrogen ion concentration. Activation parameters have been determined for the disassembly process leading to ΔH^≠ = (+163 ± 15) kJ·mol⁻¹ and ΔS^≠ = (+136 ± 11) J·K⁻¹. A …


Characterization Of A Protozoan Phosducin-Like Protein-3 (Phlp-3) Reveals Conserved Redox Activity, Rachel L. Kooistra, Robin David, Ana C. Ruiz, Sean W. Powers, Kyle J. Haselton, Kaitlyn Kiernan, Andrew M. Blagborough, Ken W. Olsen, Catherine Putonti, Stefan M. Kanzok Dec 2018

Characterization Of A Protozoan Phosducin-Like Protein-3 (Phlp-3) Reveals Conserved Redox Activity, Rachel L. Kooistra, Robin David, Ana C. Ruiz, Sean W. Powers, Kyle J. Haselton, Kaitlyn Kiernan, Andrew M. Blagborough, Ken W. Olsen, Catherine Putonti, Stefan M. Kanzok

Chemistry: Faculty Publications and Other Works

We recently identified three novel thioredoxin-like genes in the genome of the protozoan parasite Plasmodium that belong to the Phosducin-like family of proteins (PhLP). PhLPs are small cytosolic proteins hypothesized to function in G-protein signaling and protein folding. Although PhLPs are highly conserved in eukaryotes from yeast to mammals, only a few representatives have been experimentally characterized to date. In addition, while PhLPs contain a thioredoxin domain, they lack a CXXC motif, a strong indicator for redox activity, and it is unclear whether members of the PhLP family are enzymatically active. Here, we describe PbPhLP-3 as the first phosducin-like protein …


The Role Of Friction In The Static Equilibrium Of A Fixed Ladder: Theoretical Analysis And Experimental Test, Mark P. Silverman Dec 2018

The Role Of Friction In The Static Equilibrium Of A Fixed Ladder: Theoretical Analysis And Experimental Test, Mark P. Silverman

Faculty Scholarship

In a recent publication the author derived and experimentally tested several theoretical models, distinguished by different boundary conditions at the contacts with horizontal and vertical supports, that predicted the forces of reaction on a fixed (i.e. inextensible) ladder. This problem is statically indeterminate since there are 4 forces of reaction and only 3 equations of static equilibrium. The model that predicted the empirical reactions correctly used a law of static friction to complement the equations of static equilibrium. The present paper examines in greater theoretical and experimental detail the role of friction in accounting for the forces of reaction on …


Nonparametric Collective Spectral Density Estimation With An Application To Clustering The Brain Signals, Mehdi Maadooliat, Ying Sun, Tianbo Chen Dec 2018

Nonparametric Collective Spectral Density Estimation With An Application To Clustering The Brain Signals, Mehdi Maadooliat, Ying Sun, Tianbo Chen

Mathematics, Statistics and Computer Science Faculty Research and Publications

In this paper, we develop a method for the simultaneous estimation of spectral density functions (SDFs) for a collection of stationary time series that share some common features. Due to the similarities among the SDFs, the log‐SDF can be represented using a common set of basis functions. The basis shared by the collection of the log‐SDFs is estimated as a low‐dimensional manifold of a large space spanned by a prespecified rich basis. A collective estimation approach pools information and borrows strength across the SDFs to achieve better estimation efficiency. Moreover, each estimated spectral density has a concise representation using the …


Post-Wildfire Recovery Of An Upland Oak-Pine Forest On The Cumberland Plateau, Kentucky, Usa, Devin E. Black, Zachary W. Poynter, Claudia A. Cotton, Suraj Upadhaya, David D. Taylor, Wendy Leuenberger, Beth A. Blankenship, Mary A. Arthur Dec 2018

Post-Wildfire Recovery Of An Upland Oak-Pine Forest On The Cumberland Plateau, Kentucky, Usa, Devin E. Black, Zachary W. Poynter, Claudia A. Cotton, Suraj Upadhaya, David D. Taylor, Wendy Leuenberger, Beth A. Blankenship, Mary A. Arthur

Forestry and Natural Resources Faculty Publications

Background: Many forests within the southern Appalachian region, USA, have experienced decades of fire exclusion, contributing to regeneration challenges for species such as oaks (Quercus spp. L.) and pines (Pinus spp. L.), and threatening the maintenance of oak-dominated forests in the future. While the use of prescribed fire as a forest management tool is increasing within this region, there remains a lack of information on the potential role of wildfire. A wildfire within the Daniel Boone National Forest, Kentucky, USA, provided an opportunity to investigate how wildfire affected forest vegetation response.

Results: We examined the effects of fire …


The International Conference On Intelligent Biology And Medicine (Icibm) 2018: Bioinformatics Towards Translational Applications, Xiaoming Liu, Lei Xie, Zhijin Wu, Kai Wang, Zhongming Zhao, Jianhuan Ruan, Degui Zhi Dec 2018

The International Conference On Intelligent Biology And Medicine (Icibm) 2018: Bioinformatics Towards Translational Applications, Xiaoming Liu, Lei Xie, Zhijin Wu, Kai Wang, Zhongming Zhao, Jianhuan Ruan, Degui Zhi

Publications and Research

The 2018 International Conference on Intelligent Biology and Medicine (ICIBM 2018) was held on June 10–12, 2018, in Los Angeles, California, USA. The conference consisted of a total of eleven scientific sessions, four tutorials, one poster session, four keynote talks and four eminent scholar talks, which covered a wild range of aspects of bioinformatics, medical informatics, systems biology and intelligent computing. Here, we summarize nine research articles selected for publishing in BMC Bioinformatics.


Detrital Zircon Geochronology And Evolution Of The Nacimiento Block Late Mesozoic Forearc Basin, Central California Coast, Scott Johnston, Andrew R.C. Kylander-Clark, Alan D. Chapman Dec 2018

Detrital Zircon Geochronology And Evolution Of The Nacimiento Block Late Mesozoic Forearc Basin, Central California Coast, Scott Johnston, Andrew R.C. Kylander-Clark, Alan D. Chapman

Physics

Forearc basins are first-order products of convergent-margin tectonics, and their sedimentary deposits offer unique perspectives on coeval evolution of adjacent arcs and subduction complexes. New detrital zircon U-Pb geochronologic data from 23 sandstones and 11 individual conglomerate clasts sampled from forearc basin strata of the Nacimiento block, an enigmatic stretch of the Cordilleran forearc exposed along the central California coast, place constraints on models for forearc deformation during evolution of the archetypical Cordilleran Mesozoic margin. Deposition and provenance of the Nacimiento forearc developed in three stages: (1) Late Jurassic– Valanginian deposition of lower Nacimiento forearc strata with zircon derived from …


Transient Transmission Oscillations In Doped And Undoped Lithium Niobate Induced By Near-Infrared Femtosecond Pulses, Bryan J. Crossman, Gregory J. Taft Dec 2018

Transient Transmission Oscillations In Doped And Undoped Lithium Niobate Induced By Near-Infrared Femtosecond Pulses, Bryan J. Crossman, Gregory J. Taft

Physics Faculty Publications

Transient transmission oscillations in X-cut and Z-cut congruent, iron-doped, and magnesium-doped lithium niobate samples were measured using 50 fs, 800 nm, 0.5 nJ pulses from a self-mode-locked Ti:sapphire laser in an optical pump–probe system. Several Raman-active oscillation modes excited by these pulses were observed as changes in the transmitted probe intensity versus time delay between the pump and probe pulses. The samples were rotated to determine how the incident polarization of the pump pulses affects the mode excitations. The observed Raman-active oscillations correspond to previously reported symmetry modes measured with traditional, continuous-wave, Raman spectroscopy using the same scattering …


Evidence For Terahertz Acoustic Phonon Parametric Oscillator Based On Acousto-Optic Degenerate Four-Wave Mixing In A Silicon Doping Superlattice, Thomas E. Wilson Dec 2018

Evidence For Terahertz Acoustic Phonon Parametric Oscillator Based On Acousto-Optic Degenerate Four-Wave Mixing In A Silicon Doping Superlattice, Thomas E. Wilson

Physics Faculty Research

We report evidence for a 1.0-THz self-starting mirrorless acoustic phonon parametric oscillator (MAPPO) produced from acousto-optic phase-conjugate degenerate four-wave (D4WM) mixing in a THz laser-pumped silicon doping superlattice (DSL). The DSL was grown by molecular beam epitaxy on a (100) boron-doped silicon substrate. A superconducting NbTiN subwavelength grating was used to couple the THz laser radiation into the DSL. Superconducting granular aluminum bolometric detection, coupled with Si:B piezophonon spectroscopy, revealed excitation of THz coherent compressional and shear waves, along the ⟨111⟩ direction only. The Bragg scattering condition for distributed feedback, and the energy conservation requirement for the D4WM process, were …


Decays Of Pentaquarks In Hadrocharmonium And Molecular Scenarios, Michael I. Eides, Victor Yu. Petrov Dec 2018

Decays Of Pentaquarks In Hadrocharmonium And Molecular Scenarios, Michael I. Eides, Victor Yu. Petrov

Physics and Astronomy Faculty Publications

We consider decays of the hidden charm LHCb pentaquarks in the hadrocharmonium and molecular scenarios. In both pictures the LHCb pentaquarks are essentially nonrelativistic bound states. We develop a semirelativistic framework for calculation of the partial decay widths that allows the final particles to be relativistic. Using this approach we calculate the decay widths in the hadrocharmonium and molecular pictures. Molecular hidden charm pentaquarks are constructed as loosely bound states of charmed and anticharmed hadrons. Calculations show that molecular pentaquarks decay predominantly into states with open charm. Strong suppression of the molecular pentaquark decays into states with hidden charm is …


First-Principles Investigation Of Sc-Iii/Iv Under High Pressure, Sheng-Cai Zhu, Xiao-Zhi Yan, Scott Fredericks, Yan-Ling Li, Qiang Zhu Dec 2018

First-Principles Investigation Of Sc-Iii/Iv Under High Pressure, Sheng-Cai Zhu, Xiao-Zhi Yan, Scott Fredericks, Yan-Ling Li, Qiang Zhu

Physics & Astronomy Faculty Research

Using an ab initio evolutionary structure prediction method in conjunction with density functional theory, we performed a systematic investigation of the structural transition of elemental scandium under pressure up to 250 GPa. Our prediction successfully reproduced several allotropes which have been reported in the literature, including the Sc-I, Sc-II, and Sc-V. Moreover, we observed a series of energetically degenerate and geometrically similar structures at 110–195 GPa, which can partly explain the experimental observations regarding the unsolved phases III and IV reported by Y. Akahama et al. [Phys. Rev. Lett. 94, 195503 (2005)]. A detailed comparison of the powder x-ray diffraction …


Study Of The Reactions E+E-→Π+Π-Π0Π0Π0 And Π+Π-Π0Π0Η At Center-Of-Mass Energies From Threshold To 4.35 Gev Using Initial-State Radiation, J. P. Lees, V. Poireau, V. Tisserand, E. Grauges, A. Palano, G. Eigen, D. N. Brown, Yu G. Kolomensky, M. Fritsch, H. Koch, T. Schroeder, C. Hearty, T. S. Mattison, J. A. Mckenna, R. Y. So, V. E. Blinov, A. R. Buzykaev, V. P. Druzhinin, V. B. Golubev, E. A. Kozyrev, Milind Purohit, Et. Al. Dec 2018

Study Of The Reactions E+E-→Π+Π-Π0Π0Π0 And Π+Π-Π0Π0Η At Center-Of-Mass Energies From Threshold To 4.35 Gev Using Initial-State Radiation, J. P. Lees, V. Poireau, V. Tisserand, E. Grauges, A. Palano, G. Eigen, D. N. Brown, Yu G. Kolomensky, M. Fritsch, H. Koch, T. Schroeder, C. Hearty, T. S. Mattison, J. A. Mckenna, R. Y. So, V. E. Blinov, A. R. Buzykaev, V. P. Druzhinin, V. B. Golubev, E. A. Kozyrev, Milind Purohit, Et. Al.

Faculty Publications

We study the processes e+e → π+ππ0π0π0 in which an energetic photon is radiated from the initial state. The data are collected with the BABAR detector at SLAC. About 14 000 and 4700 events, respectively, are selected from a data sample corresponding to an integrated luminosity of 469 fb−1. The invariant mass of the hadronic final state defines the effective e+e center-of-mass energy. From the mass spectra, the first precise measurement of the e+e → π+π− …


Groundwater Level Response To The Wenchuan Earthquake Of May 2008, Anhua He, Ramesh Singh Dec 2018

Groundwater Level Response To The Wenchuan Earthquake Of May 2008, Anhua He, Ramesh Singh

Mathematics, Physics, and Computer Science Faculty Articles and Research

We have comprehensively analysed the co-seismic response of the groundwater levels of 280 wells in mainland China that were associated with the Wenchuan earthquake (Mw 7.9) that occurred on 12 May 2008. The observed co-seismic responses can be classified as step-like changes in 138 wells, variations in 69 wells and non-responses in 73 wells. After a quantitative analysis of spatial distribution, there was no spatially coherent signal found in the step-like changes (positive values indicate a step-like rise, and negative values indicate a step-like fall), even within 300 km of the epicenter. The amplitude and the phase shift of the …


Discerning Novel Splice Junctions Derived From Rna-Seq Alignment: A Deep Learning Approach, Yi Zhang, Xinan Liu, James N. Macleod, Jinze Liu Dec 2018

Discerning Novel Splice Junctions Derived From Rna-Seq Alignment: A Deep Learning Approach, Yi Zhang, Xinan Liu, James N. Macleod, Jinze Liu

Computer Science Faculty Publications

Background: Exon splicing is a regulated cellular process in the transcription of protein-coding genes. Technological advancements and cost reductions in RNA sequencing have made quantitative and qualitative assessments of the transcriptome both possible and widely available. RNA-seq provides unprecedented resolution to identify gene structures and resolve the diversity of splicing variants. However, currently available ab initio aligners are vulnerable to spurious alignments due to random sequence matches and sample-reference genome discordance. As a consequence, a significant set of false positive exon junction predictions would be introduced, which will further confuse downstream analyses of splice variant discovery and abundance estimation.

Results: …


Quantifying Bee Assemblages And Attractiveness Of Flowering Woody Landscape Plants For Urban Pollinator Conservation, Bernadette M. Mach, Daniel A. Potter Dec 2018

Quantifying Bee Assemblages And Attractiveness Of Flowering Woody Landscape Plants For Urban Pollinator Conservation, Bernadette M. Mach, Daniel A. Potter

Entomology Faculty Publications

Urban and suburban landscapes can be refuges for biodiversity of bees and other pollinators. Public awareness of declining pollinator populations has increased interest in growing plants that provide floral resources for bees. Various publications and websites list “bee-friendly” plants, but such lists are rarely based on empirical data, nor do they emphasize flowering trees and shrubs, which are a major component of urban landscapes. We quantified bee visitation to 72 species of flowering woody landscape plants across 373 urban and suburban sites in Kentucky and southern Ohio, USA, sampling and identifying the bee assemblages associated with 45 of the most …


The Disk Substructures At High Angular Resolution Project (Dsharp). I. Motivation, Sample, Calibration, And Overview, Sean M. Andrews, Jane Huang, Laura M. Pérez, Andrea Isella, Cornelis P. Dullemond, Nicolás T. Kurtovic, Viviana V. Guzmán, John M. Carpenter, David J. Wilner, Shangjia Zhang, Zhaohuan Zhu, Tilman Birstiel, Xue-Ning Bai, Myriam Benisty, A. Meredith Hughes, Karin I. Öberg, Luca Ricci Dec 2018

The Disk Substructures At High Angular Resolution Project (Dsharp). I. Motivation, Sample, Calibration, And Overview, Sean M. Andrews, Jane Huang, Laura M. Pérez, Andrea Isella, Cornelis P. Dullemond, Nicolás T. Kurtovic, Viviana V. Guzmán, John M. Carpenter, David J. Wilner, Shangjia Zhang, Zhaohuan Zhu, Tilman Birstiel, Xue-Ning Bai, Myriam Benisty, A. Meredith Hughes, Karin I. Öberg, Luca Ricci

Physics & Astronomy Faculty Research

We introduce the Disk Substructures at High Angular Resolution Project (DSHARP), one of the initial Large Programs conducted with the Atacama Large Millimeter/submillimeter Array (ALMA). The primary goal of DSHARP is to find and characterize substructures in the spatial distributions of solid particles for a sample of 20 nearby protoplanetary disks, using very high resolution (~0 035, or 5 au, FWHM) observations of their 240 GHz (1.25 mm) continuum emission. These data provide a first homogeneous look at the small-scale features in disks that are directly relevant to the planet formation process, quantifying their prevalence, morphologies, spatial scales, spacings, symmetry, …


The Disk Substructures At High Angular Resolution Project (Dsharp). Ix. A High-Definition Study Of The Hd 163296 Planet-Forming Disk, Andrea Isella, Jane Huang, Sean M. Andrews, Cornelis P. Dellemond, Tilman Birnstiel, Shangjia Zhang, Zhaohuan Zhu, Viviana V. Guzmán, Laura M. Pérez, Xue-Ning Bai, Myriam Benisty, John M. Carpenter, Luca Ricci, David J. Wilner Dec 2018

The Disk Substructures At High Angular Resolution Project (Dsharp). Ix. A High-Definition Study Of The Hd 163296 Planet-Forming Disk, Andrea Isella, Jane Huang, Sean M. Andrews, Cornelis P. Dellemond, Tilman Birnstiel, Shangjia Zhang, Zhaohuan Zhu, Viviana V. Guzmán, Laura M. Pérez, Xue-Ning Bai, Myriam Benisty, John M. Carpenter, Luca Ricci, David J. Wilner

Physics & Astronomy Faculty Research

The Atacama Large Millimeter/submillimeter Array observations of protoplanetary disks acquired by the Disk Substructure at High Angular Resolution Project resolve the dust and gas emission on angular scales as small as 3 astronomical units, offering an unprecedented detailed view of the environment where planets form. In this Letter, we present and discuss observations of the HD 163296 protoplanetary disk that imaged the 1.25 mm dust continuum and 12CO J = 2–1 rotational line emission at a spatial resolution of 4 and 10 au, respectively. The continuum observations resolve and allow us to characterize the previously discovered dust rings at radii …


The Disk Substructures At High Angular Resolution Project (Dsharp). Iii. Spiral Structures In The Millimeter Continuum Of The Elias 27, Im Lup, And Waoph 6 Disks, Jane Huang, Sean M. Andrews, Laura M. Pérez, Zhaohuan Zhu, Cornelis P. Dullemond, Andrea Isella, Myriam Benisty, Xue-Ning Bai, Tilman Birnstiel, John M. Carpenter, Viviana V. Guzmán, A. Meredith Hughes, Karin I. Öberg, Luca Ricci, David J. Wilner, Shangjia Zhang Dec 2018

The Disk Substructures At High Angular Resolution Project (Dsharp). Iii. Spiral Structures In The Millimeter Continuum Of The Elias 27, Im Lup, And Waoph 6 Disks, Jane Huang, Sean M. Andrews, Laura M. Pérez, Zhaohuan Zhu, Cornelis P. Dullemond, Andrea Isella, Myriam Benisty, Xue-Ning Bai, Tilman Birnstiel, John M. Carpenter, Viviana V. Guzmán, A. Meredith Hughes, Karin I. Öberg, Luca Ricci, David J. Wilner, Shangjia Zhang

Physics & Astronomy Faculty Research

We present an analysis of Atacama Large Millimeter/submillimeter Array 1.25 mm continuum observations of spiral structures in three protoplanetary disks from the Disk Substructures at High Angular Resolution Project. See full text for full abstract.


The Disk Substructures At High Angular Resolution Project (Dsharp). Ii. Characteristics Of Annular Substructures, Jane Huang, Sean M. Andrews, Cornelis P. Dellemond, Andrea Isella, Laura M. Pérez, Viviana V. Guzmán, Karin I. Öberg, Zhaohuan Zhu, Shangjia Zhang, Xue-Ning Bai, Myriam Benisty, Tilman Birstiel, John M. Carpenter, A. Meredith Hughes, Luca Ricci, Erik Weaver, David J. Wilner Dec 2018

The Disk Substructures At High Angular Resolution Project (Dsharp). Ii. Characteristics Of Annular Substructures, Jane Huang, Sean M. Andrews, Cornelis P. Dellemond, Andrea Isella, Laura M. Pérez, Viviana V. Guzmán, Karin I. Öberg, Zhaohuan Zhu, Shangjia Zhang, Xue-Ning Bai, Myriam Benisty, Tilman Birstiel, John M. Carpenter, A. Meredith Hughes, Luca Ricci, Erik Weaver, David J. Wilner

Physics & Astronomy Faculty Research

The Disk Substructures at High Angular Resolution Project (DSHARP) used ALMA to map the 1.25 mm continuum of protoplanetary disks at a spatial resolution of ~5 au. We present a systematic analysis of annular substructures in the 18 single-disk systems targeted in this survey. No dominant architecture emerges from this sample; instead, remarkably diverse morphologies are observed. Annular substructures can occur at virtually any radius where millimeter continuum emission is detected and range in widths from a few astronomical units to tens of astronomical units. Intensity ratios between gaps and adjacent rings range from near-unity to just a few percent. …


The Disk Substructures At High Angular Resolution Project (Dsharp). Vii. The Planet–Disk Interactions Interpretation, Shangjia Zhang, Zhaohuan Zhu, Jane Huang, Viviana V. Guzmán, Sean M. Andrews, Tilman Birnstiel, Cornelis P. Dullemond, John M. Carpenter, Andrea Isella, Laura M. Pérez, Myriam Benisty, David J. Wilner, Clément Baruteau, Xue-Ning Bai, Luca Ricci Dec 2018

The Disk Substructures At High Angular Resolution Project (Dsharp). Vii. The Planet–Disk Interactions Interpretation, Shangjia Zhang, Zhaohuan Zhu, Jane Huang, Viviana V. Guzmán, Sean M. Andrews, Tilman Birnstiel, Cornelis P. Dullemond, John M. Carpenter, Andrea Isella, Laura M. Pérez, Myriam Benisty, David J. Wilner, Clément Baruteau, Xue-Ning Bai, Luca Ricci

Physics & Astronomy Faculty Research

The Disk Substructures at High Angular Resolution Project (DSHARP) provides a large sample of protoplanetary disks with substructures that could be induced by young forming planets. To explore the properties of planets that may be responsible for these substructures, we systematically carry out a grid of 2D hydrodynamical simulations, including both gas and dust components. We present the resulting gas structures, including the relationship between the planet mass, as well as (1) the gaseous gap depth/width and (2) the sub/super-Keplerian motion across the gap. We then compute dust continuum intensity maps at the frequency of the DSHARP observations. We provide …


The Disk Substructures At High Angular Resolution Project (Dsharp). Vi. Dust Trapping In Thin-Ringed Protoplanetary Disks, Cornelis P. Dullemond, Tilman Birnstiel, Jane Huang, Nicolás T. Kurtovic, Sean M. Andrews, Viviana V. Guzmán, Laura M. Pérez, Andrea Isella, Zhaohuan Zhu, Myriam Benisty, David J. Wilner, Xue-Ning Bai, John M. Carpenter, Shangjia Zhang, Luca Ricci Dec 2018

The Disk Substructures At High Angular Resolution Project (Dsharp). Vi. Dust Trapping In Thin-Ringed Protoplanetary Disks, Cornelis P. Dullemond, Tilman Birnstiel, Jane Huang, Nicolás T. Kurtovic, Sean M. Andrews, Viviana V. Guzmán, Laura M. Pérez, Andrea Isella, Zhaohuan Zhu, Myriam Benisty, David J. Wilner, Xue-Ning Bai, John M. Carpenter, Shangjia Zhang, Luca Ricci

Physics & Astronomy Faculty Research

A large fraction of the protoplanetary disks observed with ALMA display multiple well-defined and nearly perfectly circular rings in the continuum, in many cases with substantial peak-to-valley contrast. The DSHARP campaign shows that several of these rings are very narrow in radial extent. In this Letter we test the hypothesis that these dust rings are caused by dust trapping in radial pressure bumps, and if confirmed, put constraints on the physics of the dust trapping mechanism. We model this process analytically in 1D, assuming axisymmetry. By comparing this model to the data, we find that all rings are consistent with …


The Disk Substructures At High Angular Resolution Program (Dsharp). Viii. The Rich Ringed Substructures In The As 209 Disk, Viviana V. Guzmán, Jane Huang, Sean M. Andrews, Andrea Isella, Laura M. Pérez, John M. Carpenter, Cornelis P. Dullemond, Luca Ricci, Tilman Birnstiel, Shangjia Zhang, Zhaohuan Zhu, Xue-Ning Bai, Myriam Benisty, Karin I. Öberg, David J. Wilner Dec 2018

The Disk Substructures At High Angular Resolution Program (Dsharp). Viii. The Rich Ringed Substructures In The As 209 Disk, Viviana V. Guzmán, Jane Huang, Sean M. Andrews, Andrea Isella, Laura M. Pérez, John M. Carpenter, Cornelis P. Dullemond, Luca Ricci, Tilman Birnstiel, Shangjia Zhang, Zhaohuan Zhu, Xue-Ning Bai, Myriam Benisty, Karin I. Öberg, David J. Wilner

Physics & Astronomy Faculty Research

The Disk Substructures at High Angular Resolution Program (DSHARP). VIII. The Rich Ringed Substructures in the AS 209 Disk


The Disk Substructures At High Angular Resolution Project (Dsharp). Iv. Characterizing Substructures And Interactions In Disks Around Multiple Star Systems, Nicolás T. Kurtovic, Laura M. Pérez, Myriam Benisty, Zhaohuan Zhu, Shangjia Zhang, Jane Huang, Sean M. Andrews, Cornelis P. Dullemond, Andrea Isella, Xue-Ning Bai, John M. Carpenter, Viviana V. Guzmán, Luca Ricci, David J. Wilner Dec 2018

The Disk Substructures At High Angular Resolution Project (Dsharp). Iv. Characterizing Substructures And Interactions In Disks Around Multiple Star Systems, Nicolás T. Kurtovic, Laura M. Pérez, Myriam Benisty, Zhaohuan Zhu, Shangjia Zhang, Jane Huang, Sean M. Andrews, Cornelis P. Dullemond, Andrea Isella, Xue-Ning Bai, John M. Carpenter, Viviana V. Guzmán, Luca Ricci, David J. Wilner

Physics & Astronomy Faculty Research

To characterize the substructures induced in protoplanetary disks by the interaction between stars in multiple systems, we study the 1.25 mm continuum and the 12CO(J = 2–1) spectral line emission of the triple systems HT Lup and AS 205, at scales of ≈5 au, as part of the "Disk Substructures at High Angular Resolution Project" (DSHARP). In the continuum emission, we find two symmetric spiral arms in the disk around AS 205 N, with a pitch angle of 14°, while the southern component AS 205 S, itself a spectroscopic binary, is surrounded by a compact inner disk and a bright …


The Disk Substructures At High Angular Resolution Project (Dsharp). X. Multiple Rings, A Misaligned Inner Disk, And A Bright Arc In The Disk Around The T Tauri Star Hd 143006, Laura M. Pérez, Myriam Benisty, Sean M. Andrews, Andrea Isella, Cornelis P. Dellemond, Jane Huang, Nicolás T. Kurtovic, Viviana V. Guzmán, Zhaohuan Zhu, Tilman Birnstiel, Shangjia Zhang, John M. Carpenter, David J. Wilner, Luca Ricci, Xue-Ning Bai, Erik Weaver, Karin I. Öberg Dec 2018

The Disk Substructures At High Angular Resolution Project (Dsharp). X. Multiple Rings, A Misaligned Inner Disk, And A Bright Arc In The Disk Around The T Tauri Star Hd 143006, Laura M. Pérez, Myriam Benisty, Sean M. Andrews, Andrea Isella, Cornelis P. Dellemond, Jane Huang, Nicolás T. Kurtovic, Viviana V. Guzmán, Zhaohuan Zhu, Tilman Birnstiel, Shangjia Zhang, John M. Carpenter, David J. Wilner, Luca Ricci, Xue-Ning Bai, Erik Weaver, Karin I. Öberg

Physics & Astronomy Faculty Research

We present a detailed analysis of new Atacama Large Millimeter/submillimeter Array (ALMA) observations of the disk around the T-Tauri star HD 143006, which at 46 mas (7.6 au) resolution reveals new substructures in the 1.25 mm continuum emission. The disk resolves into a series of concentric rings and gaps, together with a bright arc exterior to the rings that resembles hydrodynamical simulations of a vortex and a bridge-like feature connecting the two innermost rings. Although our 12CO observations at similar spatial resolution do not show obvious substructure, they reveal an inner disk depleted of CO emission. From the continuum emission …


Vibrational Analysis Of A Rate-Slowing Conformational Kinetic Isotope Effect, O. Maduka Ogba, Zichen Liu, Daniel J. O'Leary Dec 2018

Vibrational Analysis Of A Rate-Slowing Conformational Kinetic Isotope Effect, O. Maduka Ogba, Zichen Liu, Daniel J. O'Leary

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

An enthalpy-entropy approach to analyzing a rate-slowing conformational kinetic isotope effect (CKIE) in a deuterated doubly-bridged biaryl system is described. The computed isotope effect (kH/kD = 1.075, 368 K) agrees well with the measured value (kH/kD = 1.06, 368 K). The rateslowing (normal isotope effect) nature of the computed CKIE is shown to originate from a vibrational entropy contribution defined by the twenty lowest frequency normal modes in the ground state and transition state structures. This normal entropy contribution is offset by an inverse vibrational enthalpy contribution, which also arises from the twenty lowest frequency normal modes. Zero point vibrational …


The Disk Substructures At High Angular Resolution Project (Dsharp). V. Interpreting Alma Maps Of Protoplanetary Disks In Terms Of A Dust Model, Tilman Birnstiel, Cornelis P. Dullemond, Zhaohuan Zhu, Sean M. Andrews, Xue-Ning Bai, David J. Wilner, John M. Carpenter, Jane Huang, Andrea Isella, Myriam Benisty, Laura M. Pérez, Shangjia Zhang Dec 2018

The Disk Substructures At High Angular Resolution Project (Dsharp). V. Interpreting Alma Maps Of Protoplanetary Disks In Terms Of A Dust Model, Tilman Birnstiel, Cornelis P. Dullemond, Zhaohuan Zhu, Sean M. Andrews, Xue-Ning Bai, David J. Wilner, John M. Carpenter, Jane Huang, Andrea Isella, Myriam Benisty, Laura M. Pérez, Shangjia Zhang

Physics & Astronomy Faculty Research

The Disk Substructures at High Angular Resolution Project (DSHARP) is the largest homogeneous high-resolution (~0 035, or ~5 au) disk continuum imaging survey with the Atacama Large Millimeter/submillimeter Array (ALMA) so far. In the coming years, many more disks will be mapped with ALMA at similar resolution. Interpreting the results in terms of the properties and quantities of the emitting dusty material is, however, a very non-trivial task. This is in part due to the uncertainty in the dust opacities, an uncertainty that is not likely to be resolved any time soon. It is also partly due to the fact …


Simulating Detection-Censored Movement Records For Home Range Analysis Planning, Lyndsie S. Wszola, Victoria L. Simonsen, Lucía Corral, Christopher J. Chizinski, Joseph J. Fontaine Dec 2018

Simulating Detection-Censored Movement Records For Home Range Analysis Planning, Lyndsie S. Wszola, Victoria L. Simonsen, Lucía Corral, Christopher J. Chizinski, Joseph J. Fontaine

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Home range estimation is an important analytical method in applied spatial ecology, yet best practices for addressing the effects of spatial variation in detection probability on home range estimates remain elusive. We introduce the R package “DiagnoseHR,” simulation tools for assessing how variation in detection probability arising from landscape, animal behavior, and methodological processes affects home range inference. We demonstrate the utility of simulation methods for home range analysis planning by comparing bias arising from three home range estimation methods under multiple detection scenarios. We simulated correlated random walks in three landscapes that varied in detection probability and constructed home …


Estimating The Sediment Flux And Budget For A Data Limited Rift Valley Lake In Ethiopia, Alemu O. Aga, Assefa M. Melesse Dec 2018

Estimating The Sediment Flux And Budget For A Data Limited Rift Valley Lake In Ethiopia, Alemu O. Aga, Assefa M. Melesse

Department of Earth and Environment

Information on sediment concentration in rivers is important for the design and management of reservoirs. In this paper, river sediment flux and siltation rate of a rift valley lake basin (Lake Ziway, Ethiopia) was modeled using suspended sediment concentration (SSC) samples from four rivers and lake outlet stations. Both linear and non-linear least squares log–log regression methods were used to develop the model. The best-fit model was tested and evaluated qualitatively by time-series plots, quantitatively by using watershed model evaluation statistics, and validated by calculating the prediction error. Sediment yield (SY) of ungauged rivers were assessed by developing and using …


Improved Measurement Of The Longitudinal Spin Transfer To Λ And Bar(Λ) Hyperons In Polarized Proton-Proton Collisions At Sqrt(S) = 200 Gev, James Drachenberg Dec 2018

Improved Measurement Of The Longitudinal Spin Transfer To Λ And Bar(Λ) Hyperons In Polarized Proton-Proton Collisions At Sqrt(S) = 200 Gev, James Drachenberg

Engineering and Physics

No abstract provided.


Lozenge Tilings Of A Halved Hexagon With An Array Of Triangles Removed From The Boundary, Part Ii, Tri Lai Dec 2018

Lozenge Tilings Of A Halved Hexagon With An Array Of Triangles Removed From The Boundary, Part Ii, Tri Lai

Department of Mathematics: Faculty Publications

Proctor's work on staircase plane partitions yields an exact enumeration of lozenge tilings of a halved hexagon on the triangular lattice. Rohatgi later ex- tended this tiling enumeration to a halved hexagon with a triangle cut o from the boundary. In his previous paper, the author proved a common generalization of Proctor's and Rohatgi's results by enumerating lozenge tilings of a halved hexagon in the case an array of an arbitrary number of triangles has been removed from a non-staircase side. In this paper we consider the other case when the array of tri- angles has been removed from the …