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Theses and Dissertations

2009

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Articles 31 - 60 of 194

Full-Text Articles in Physical Sciences and Mathematics

Gas Phase Chiral Recognition, Characterization Of Porous Polymer Monolith Nanospray Ionization, And The Negative Mode Crafti Method Using Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Nannan Fang Sep 2009

Gas Phase Chiral Recognition, Characterization Of Porous Polymer Monolith Nanospray Ionization, And The Negative Mode Crafti Method Using Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Nannan Fang

Theses and Dissertations

Our group has been studying chiral recognition in gas phase using mass spectrometry for more than 10 years. We are interested in gas phase studies of fundamental interactions because the gas phase avoids complications and masking effects that may arise upon solvation. Therefore, the results of gas phase experiments can be directly compared with those of high-level computational studies. In chapter 2, I studied the roles of hydrogen bonding and pi stacking in gas phase chiral recognition between aromatic crown molecules and aromatic amines. High affinity between host and guest doesn't necessarily result in better recognition. If the affinity is …


Guided Testing For Automatic Error Discovery In Concurrent Software, Neha Shyam Rungta Sep 2009

Guided Testing For Automatic Error Discovery In Concurrent Software, Neha Shyam Rungta

Theses and Dissertations

The quality and reliability of software systems, in terms of their functional correctness, critically relies on the effectiveness of the testing tools and techniques to detect errors in the system before deployment. A lack of testing tools for concurrent programs that systematically control thread scheduling choices has not allowed concurrent software development to keep abreast with hardware trends of multi-core and multi-processor technologies. This motivates a need for the development of systematic testing techniques that detect errors in concurrent programs. The work in this dissertation presents a potentially scalable technique that can be used to detect concurrency errors in production …


Deriving Optimal Composite Scores: Relating Observational/Longitudinal Data With A Primary Endpoint, Rhonda Ellis Sep 2009

Deriving Optimal Composite Scores: Relating Observational/Longitudinal Data With A Primary Endpoint, Rhonda Ellis

Theses and Dissertations

In numerous clinical/experimental studies, multiple endpoints are measured on each subject. It is often not clear which of these endpoints should be designated as of primary importance. The desirability function approach is a way of combining multiple responses into a single unitless composite score. The response variables may include multiple types of data: binary, ordinal, count, interval data. Each response variable is transformed to a 0 to1 unitless scale with zero representing a completely undesirable response and one representing the ideal value. In desirability function methodology, weights on individual components can be incorporated to allow different levels of importance to …


Application Of Dual-Tree Complex Wavelet Transforms To Burst Detection And Rf Fingerprint Classification, Randall W. Klein Aug 2009

Application Of Dual-Tree Complex Wavelet Transforms To Burst Detection And Rf Fingerprint Classification, Randall W. Klein

Theses and Dissertations

This work addresses various Open Systems Interconnection (OSI) Physical (PHY) layer mechanisms to extract and exploit RF waveform features (”fingerprints”) that are inherently unique to specific devices and that may be used to provide hardware specific identification (manufacturer, model, and/or serial number). This is addressed by applying a Dual-Tree Complex Wavelet Transform (DT-CWT) to improve burst detection and RF fingerprint classification. A ”Denoised VT” technique is introduced to improve performance at lower SNRs, with denoising implemented using a DT-CWT decomposition prior to Traditional VT processing. A newly developed Wavelet Domain (WD) fingerprinting technique is presented using statistical WD fingerprints with …


Total Synthesis Of (-)-Acutumine, Fang Li Aug 2009

Total Synthesis Of (-)-Acutumine, Fang Li

Theses and Dissertations

Acutumine is a tetracyclic alkaloid isolated from the Asian vine Menispermum dauricum with selective T-cell cytotoxicity and antiamnestic properties. We have developed a total synthetic route to this congested alkaloid, during which we also found a novel, stereoselective radical-crossover reaction that combines an intramolecular radical conjugate addition with a subsequent enolate hydroxylation. Key features of this synthesis also include a reagent-controlled diastereoselective ketone allylation, an anionic oxy-Cope rearrangement to form a congested quaternary sterocenter, a pyridine-mediated selective ozonolysis, and a Lewis acid promoted Michael-type cyclization.


Kiwivault: Encryption Software For Portable Storage Devices, Trevor Bradshaw Florence Aug 2009

Kiwivault: Encryption Software For Portable Storage Devices, Trevor Bradshaw Florence

Theses and Dissertations

While many people use USB flash drives, most do not protect their stored documents. Solutions for protecting flash drives exist but inherently limit functionality found in unprotected drives such as portability, usability, and the ability to share documents between multiple people. In addition, other drawbacks are introduced such as the possibility of losing access to protected documents if a password is lost. Assuming protecting portable documents is important, in order for people to be willing to protect their documents they should be required to make as few sacrifices in functionality as possible. We introduce KiwiVault, a USB flash drive encryption …


Scan-Based Near-Field Acoustical Holography On Partially Correlated Sources, Michael D. Gardner Aug 2009

Scan-Based Near-Field Acoustical Holography On Partially Correlated Sources, Michael D. Gardner

Theses and Dissertations

Scan-based near-field acoustical holography (NAH) is applied to partially correlated sources. Partial field decomposition via the virtual coherence method is used to implement the scan-based NAH. The background and theory of these methods are developed. Multiple stationary reference microphones are required for the partial field decomposition. Guidelines for reference microphone placement in the literature thus far have been limited. Improved guidelines for reference microphones are given after the results of two sets of experiments. The first set involves discrete, partially correlated sources, both physical and numerical. The second set of experiments is strictly numerical and involves continuous sources. Fewer microphones …


Development Of Biocompatible Polymer Monoliths For The Analysis Of Proteins And Peptides, Yun Li Aug 2009

Development Of Biocompatible Polymer Monoliths For The Analysis Of Proteins And Peptides, Yun Li

Theses and Dissertations

Biocompatibility is an important issue for the development of chromatographic stationary phases for the analysis of biomolecules (including proteins and peptides). A biocompatible stationary phase material is a material that resists nonspecific adsorption of biomolecules and does not interact with them in a way that would alter or destroy their structures or biochemical functions. The monolithic column format is a good alternative to typical spherical particle packed columns for capillary liquid chromatography of biomacromolecules. Several novel anion-exchange polymer monoliths for the analysis of proteins were synthesized for improved biocompatibility. Two novel polymeric monoliths were prepared in a single step by …


Real-Time Virus Analysis Via Image Charge Detection Surface Induced Dissociation Tandem Mass Spectrometry, Seth T. Call Aug 2009

Real-Time Virus Analysis Via Image Charge Detection Surface Induced Dissociation Tandem Mass Spectrometry, Seth T. Call

Theses and Dissertations

This thesis reports on the development of a novel mass spectrometer combining image charge detection with surface induced dissociation for real-time analysis of intact viruses. Protonated viruses produced using electrospray are accelerated and subsequently impact on a solid surface. Capsid peptides released during the impact are analyzed using time-of-flight mass spectrometry. Image charge detection is used to measure the mass and charge states of structurally intact, electrosprayed viruses prior to impact. Since virus capsids are composed of loosely-bound proteins, collision of viruses with surfaces at moderate impact energies could release intact proteins. The masses and numbers of different protein types …


Supporting Remote Manipulation: An Ecological Approach, John A. Atherton Aug 2009

Supporting Remote Manipulation: An Ecological Approach, John A. Atherton

Theses and Dissertations

User interfaces for remote robotic manipulation widely lack sufficient support for situation awareness and, consequently, can induce high mental workload. With poor situation awareness, operators may fail to notice task-relevant features in the environment often leading the robot to collide with the environment. With high workload, operators may not perform well over long periods of time and may feel stressed. We present an ecological visualization that improves operator situation awareness. Our user study shows that operators using the ecological interface collided with the environment on average half as many times compared with a typical interface, even with a poorly calibrated …


Design And Characterization Of A Human Exposure Chamber And Inversion Episodes In Salt Lake City, Utah In January/February Of 2009, Roman Yuri Kuprov Aug 2009

Design And Characterization Of A Human Exposure Chamber And Inversion Episodes In Salt Lake City, Utah In January/February Of 2009, Roman Yuri Kuprov

Theses and Dissertations

Research on health effects of particulate matter (PM) has been a very active area in the last two decades. One plausible mechanism by which exposure to PM affects human health includes modification of autonomic endothelium function. Decreased endothelium activity causes heightened risks of cardiovascular disease. A human exposure chamber designed to conduct experiments to quantify diminished function of endothelium from short term exposure to PM is described. The chamber consists of two stages for containment and pre-treatment of PM and exposure of human subjects. Concentrations of CO, CO2, NO, NO2, O3, and PM2.5, are monitored and controlled in the exposure …


An Examination Of The Decision Analysis Approach To R&D Portfolios, Kelly Duncan Aug 2009

An Examination Of The Decision Analysis Approach To R&D Portfolios, Kelly Duncan

Theses and Dissertations

A portfolio can be defined as “a purposeful combination of items” (Chien and Sainfort 1998). As the topic relates to research and development (R&D) the items in question are technologies, projects or products under consideration for inclusion in a given portfolio. As described by surveys from Cooper et al (1998), companies have widely varying practices for portfolio selection. This thesis examines existing literature to determine the key characteristics of good portfolio and portfolio method. The approach needs to handle multiple objectives, account for project interactions, and address the social aspect of decision making. The resulting portfolio should be aligned with …


Solar Variability And Climate Processes: The Influence Of Fluctuating Solar Spectral Irradiance On Differential Surface Heating As A Function Of Soil Geochemistry And Radiation Absorption Characteristics, Susan Wahl Aug 2009

Solar Variability And Climate Processes: The Influence Of Fluctuating Solar Spectral Irradiance On Differential Surface Heating As A Function Of Soil Geochemistry And Radiation Absorption Characteristics, Susan Wahl

Theses and Dissertations

The influence of solar variability on climate has received increasing attention. Much of the research has dealt with fluctuating ultraviolet radiation and its effects in the stratosphere; decadal signatures in cloud cover and their relationship to cosmic rays; and correlations of surface air temperature with various proxies (e.g., sunspot numbers; 10Be from ice cores and marine sediments). Much of the research has focused on changing solar radiation within the upper atmosphere and the propagating effects into the troposphere. However, there is a missing component involving differential surface heating as a function of soil composition and corresponding spectral radiation absorption properties …


A Graphical Analysis Of Simultaneously Choosing The Bandwidth And Mixing Parameter For Semiparametric Regression Techniques, Derick L. Rivers Jul 2009

A Graphical Analysis Of Simultaneously Choosing The Bandwidth And Mixing Parameter For Semiparametric Regression Techniques, Derick L. Rivers

Theses and Dissertations

There has been extensive research done in the area of Semiparametric Regression. These techniques deliver substantial improvements over previously developed methods, such as Ordinary Least Squares and Kernel Regression. Two of these hybrid techniques: Model Robust Regression 1 (MRR1) and Model Robust Regression 2 (MRR2) require the choice of an appropriate bandwidth for smoothing and a mixing parameter that allows a portion of a nonparametric fit to be used in fitting a model that may be misspecifed by other regression methods. The current method of choosing the bandwidth and mixing parameter does not guarantee the optimal choices in either case. …


A Hop-By-Hop Architecture For Multicast Transport In Ad Hoc Wireless Networks, Manoj Kumar Pandey Jul 2009

A Hop-By-Hop Architecture For Multicast Transport In Ad Hoc Wireless Networks, Manoj Kumar Pandey

Theses and Dissertations

Ad hoc wireless networks are increasingly being used to provide connectivity where a wired networking infrastructure is either unavailable or inaccessible. Many deployments utilize group communication, where several senders communicate with several receivers; multicasting has long been seen as an efficient way to provide this service. While there has been a great deal of research on multicast routing in ad hoc networks, relatively little attention has been paid to the design of multicast transport protocols, which provide reliability and congestion control. In this dissertation we design and implement a complete multicast transport architecture that includes both routing and transport protocols. …


A Sequential Algorithm To Identify The Mixing Endpoints In Liquids In Pharmaceutical Applications, Akriti Saxena Jul 2009

A Sequential Algorithm To Identify The Mixing Endpoints In Liquids In Pharmaceutical Applications, Akriti Saxena

Theses and Dissertations

The objective of this thesis is to develop a sequential algorithm to determine accurately and quickly, at which point in time a product is well mixed or reaches a steady state plateau, in terms of the Refractive Index (RI). An algorithm using sequential non-linear model fitting and prediction is proposed. A simulation study representing typical scenarios in a liquid manufacturing process in pharmaceutical industries was performed to evaluate the proposed algorithm. The data simulated included autocorrelated normal errors and used the Gompertz model. A set of 27 different combinations of the parameters of the Gompertz function were considered. The results …


A Top-Down Proteomic Approach For The Discovery Of Novel Serum Biomarkers Of Pregnancy-Related Disease, Karen Merrell Jul 2009

A Top-Down Proteomic Approach For The Discovery Of Novel Serum Biomarkers Of Pregnancy-Related Disease, Karen Merrell

Theses and Dissertations

The serum fraction of blood is an ideal material in which to search for novel biomarkers for disease. It is easily obtained through relatively non-invasive means, routinely collected, and a rich treasure-trove of information about the health of an individual. Cells react to signal molecules, take up nutrients, and release waste products, fragments that are the result of proteolysis, and other molecules out into the bloodstream. If these components are unique to the cells in question, that part of the complex mixture that is the blood stream can potentially characterize the health of the tissue or organ those cells are …


Massively Parallel Indirect Dielectrophoresis Controlled Placement Of Carbon Nanotubes, Hiram Jacob Conley Jul 2009

Massively Parallel Indirect Dielectrophoresis Controlled Placement Of Carbon Nanotubes, Hiram Jacob Conley

Theses and Dissertations

Placement of single walled carbon nanotubes is demonstrated through massively parallel indirect dielectrophoresis (MPID). MPID is shown to be able to control the placement of carbon tubes as well as the number of tubes placed. Lumped element analysis for AC circuits is used to model MPID. This model allows for predictions of the number of tubes that will be captured in a trap. This model has been consistent with experimental data of numbers of nanotube placed in a junction. Carbon nanotubes placed with MPID are shown to be electrically active.


Factors Limiting Benthic Algal Abundance In Virginia Streams Of The Coastal Plain, Michael Brandt Jul 2009

Factors Limiting Benthic Algal Abundance In Virginia Streams Of The Coastal Plain, Michael Brandt

Theses and Dissertations

Algae are important components of stream food webs and often used in biomonitoring assessments. Little is known regarding the factors that limit their abundance in streams of the VA Coastal Plain. The surficial geology of the Coastal Plain is predominately sandy deposits which comprise the dominant substrate in streams of this region. In a comparative study of five streams located near the VCU Rice Center, we quantified substrate composition, light availability, and nutrient concentrations to assess their relative importance in determining benthic algal abundance. The proportion of stream area comprised of hard substrates was a significant predictor of variation in …


Extreme Ultraviolet Polarimetry With Laser-Generated High-Order Harmonics: Characterization Of Uranium, Nicole Brimhall Jul 2009

Extreme Ultraviolet Polarimetry With Laser-Generated High-Order Harmonics: Characterization Of Uranium, Nicole Brimhall

Theses and Dissertations

We developed an extreme ultraviolet (EUV) polarimeter, which employs laser-generated high-order harmonics as the light source. This relatively high-flux, directional EUV source has available wavelengths between 10 nm and 47 nm with easily rotatable linear polarization. The polarimeter has allowed us to characterize the optical constants of materials that may be useful for EUV optics. The instrument has a versatile positioning system and a spectral resolution of about 180, and we have demonstrated that reflectance as low as 0.1% can be measured repeatably at EUV wavelengths. We investigate the high harmonic source used for polarimetry measurements by documenting the spatial …


Four-Body Problem With Collision Singularity, Duokui Yan Jul 2009

Four-Body Problem With Collision Singularity, Duokui Yan

Theses and Dissertations

In this dissertation, regularization of simultaneous binary collision, existence of a Schubart-like periodic orbit, existence of a planar symmetric periodic orbit with multiple simultaneous binary collisions, and their linear stabilities are studied. The detailed background of those problems is introduced in chapter 1. The singularities of simultaneous binary collision in the collinear four-body problem is regularized in chapter 2. We use canonical transformations to collectively analytically continue the singularities of the simultaneous binary collision solutions in both the decoupled case and the coupled case. All the solutions are found and more importantly, we find a crucial first integral which describes …


Modeling The Problem Of Assigning Virginia’S Localities To Dcr’S Regional Offices, Sudharshana Srinivasan Jul 2009

Modeling The Problem Of Assigning Virginia’S Localities To Dcr’S Regional Offices, Sudharshana Srinivasan

Theses and Dissertations

Virginia’s Department of Conservation and Recreation (DCR) assigns all of Virginia localities to Regional Offices to help conserve the natural resources in a certain region. In this paper, we present a mathematical model for optimizing such assignments by minimizing the travel time and cost of these assignments. With the growing increase in fuel costs and tighter budgets, our solution finds alternate assignments that will help cut costs by 14% annually. We have used integer programming techniques to find optimal assignments which satisfy requirements, respect limitations and minimize cost. Several plans are suggested, some keeping soil and water conservation districts together …


The Expectation Of Transition Events On Finite-State Markov Chains, Jeremy Michael West Jul 2009

The Expectation Of Transition Events On Finite-State Markov Chains, Jeremy Michael West

Theses and Dissertations

Markov chains are a fundamental subject of study in mathematical probability and have found wide application in nearly every branch of science. Of particular interest are finite-state Markov chains; the representation of finite-state Markov chains by a transition matrix facilitates detailed analysis by linear algebraic methods. Previous methods of analyzing finite-state Markov chains have emphasized state events. In this thesis we develop the concept of a transition event and define two types of transition events: cumulative events and time-average events. Transition events generalize state events and provide a more flexible framework for analysis. We derive computable, closed-form expressions for the …


The Orbifold Landau-Ginzburg Conjecture For Unimodal And Bimodal Singularities, Natalie Wilde Bergin Jul 2009

The Orbifold Landau-Ginzburg Conjecture For Unimodal And Bimodal Singularities, Natalie Wilde Bergin

Theses and Dissertations

The Orbifold Landau-Ginzburg Mirror Symmetry Conjecture states that for a quasihomogeneous singularity W and a group G of symmetries of W, there is a dual singularity WT and dual group GT such that the orbifold A-model of W/G is isomorphic to the orbifold B-model of WT/GT. The Landau-Ginzburg A-model is the Frobenius algebra HW,G constructed by Fan, Jarvis, and Ruan, and the B-model is the Orbifold Milnor ring of WT . The unorbifolded conjecture has been verified for Arnol'd's list of simple, unimodal and bimodal quasi-homogeneous singularities with G the maximal diagonal symmetry group by Priddis, Krawitz, Bergin, Acosta, et …


Ion Transport Behaviors Upstream And Downstream From The Sampling Cone Of An Inductively Coupled Plasma Mass Spectrometer, Haibin Ma Jul 2009

Ion Transport Behaviors Upstream And Downstream From The Sampling Cone Of An Inductively Coupled Plasma Mass Spectrometer, Haibin Ma

Theses and Dissertations

Inductively coupled plasma - mass spectrometry (ICP-MS) is the technique of choice worldwide for trace elemental determinations because of its excellent ionization ability, low detection limits and fast analysis speeds. However, the ICP-MS still suffers from some disadvantages, such as spectral overlap and severe matrix effects. Matrix effects or interferences, partly arise from changes in the analyte transmission through the interfacial region between the ICP and mass spectrometer with changes in sample matrix. Better understanding of the transmission behaviors of analyte through the sampling and skimmer cones will provide the insights needed to alleviate matrix interferences and to improve the …


Estimating The Effect Of Disability On Medicare Expenditures, David Morris Burk Jul 2009

Estimating The Effect Of Disability On Medicare Expenditures, David Morris Burk

Theses and Dissertations

We consider the effect of disability status on Medicare expenditures. Disabled elderly historically have accounted for a significant portion of Medicare expenditures. Recent demographic trends exhibit a decline in the size of this population, causing some observers to predict declines in Medicare expenditures. There are, however, reasons to be suspicious of this rosy forecast. To better understand the effect of disability on Medicare expenditures, we develop and estimate a model using the generalized method of moments technique. We find that newly disabled elderly generally spend more than those who have been disabled for longer periods of time. Also, we find …


Relaxation Of Vibrationally Excited Trifluorobenzene And Tetrafluorobenzene By Collisions With Carbon Dioxide, Alan M. Johnson Jul 2009

Relaxation Of Vibrationally Excited Trifluorobenzene And Tetrafluorobenzene By Collisions With Carbon Dioxide, Alan M. Johnson

Theses and Dissertations

An investigation into the relaxation of highly vibrationally excited trifluorobenzene and tetrafluorobenzene following collisions with carbon dioxide was performed using diode laser transient absorption spectroscopy. A 248 nm excimer laser prepared the vibrationally hot (E'~41,000 cm-1) fluorobenzene molecules. Large amounts of translational and rotational energy are transferred through collisions between the hot donor molecule and CO2. Rate constants and collisional probabilities were calculated by probing the high J states (J=58~80) of CO2 in the vibrational ground state, 0000, with measurements taken 1 µsec, ¼ the mean gas collision time, following each excimer laser pulse. The energy transfer probability distribution function, …


The Role Of Smpb In The Early Stages Of Trans-Translation, Deanna June Cazier Jul 2009

The Role Of Smpb In The Early Stages Of Trans-Translation, Deanna June Cazier

Theses and Dissertations

Ribosomes stall on defective messenger RNA transcripts in eubacteria. Without a mechanism to release stalled ribosomes, these cells would die. Transfer-messenger RNA (tmRNA) and small protein B (SmpB) reactivate stalled ribosomes in a process known as trans-translation. Together, tmRNA and SmpB mimic alanyl-tRNA, entering the A site of stalled ribosomes and accepting transfer of the stalled polypeptide. A portion of tmRNA is then positioned as a template for the ribosome to resume translating. The tmRNA open reading frame encodes a proteolysis tag to mark the aberrant polypeptide for degradation and a stop codon to release the ribosome. How are tmRNA …


Some Congruence Properties Of Pell's Equation, Nathan C. Priddis Jul 2009

Some Congruence Properties Of Pell's Equation, Nathan C. Priddis

Theses and Dissertations

In this thesis I will outline the impact of Pell's equation on various branches of number theory, as well as some of the history. I will also discuss some recently discovered properties of the solutions of Pell's equation.


Evans Function Computation, Blake H. Barker Jul 2009

Evans Function Computation, Blake H. Barker

Theses and Dissertations

In this thesis, we review the stability problem for traveling waves and discuss the Evans function, an emerging tool in the stability analysis of traveling waves. We describe some recent developments in the numerical computation of the Evans function and discuss STABLAB, an interactive MATLAB based tool box that we developed. In addition, we verify the Evans function for shock layers in Burgers equation and the p-system with and without capillarity, as well as pulses in the generalized Kortweg-de Vries (gKdV) equation. We conduct a new study of parallel shock layers in isentropic magnetohydrodynamics (MHD) obtaining results consistent with stability.