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Agronomy and Crop Sciences Commons

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2017

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Articles 91 - 120 of 125

Full-Text Articles in Agronomy and Crop Sciences

Equilibrium Moisture Content Of Kabuli, Chickpea, Black Sesame, And White Sesame Seeds, Paul R. Armstrong, Elizabeth B. Maghirang, Bhadriraju Subramanyam, Samuel G. Mcneill Jan 2017

Equilibrium Moisture Content Of Kabuli, Chickpea, Black Sesame, And White Sesame Seeds, Paul R. Armstrong, Elizabeth B. Maghirang, Bhadriraju Subramanyam, Samuel G. Mcneill

Biosystems and Agricultural Engineering Faculty Publications

Sesame and chickpea are important crops in Ethiopia because both are major export crops that generate much revenue for both small farmers and the country as a whole. However, there is a lack of information about the fundamental equilibrium moisture content (EMC) relationships among these crops, which would help facilitate better monitoring and storage. Therefore, EMC adsorption and desorption prediction models based on temperature (T) and relative humidity (RH) were developed for the modified Chung-Pfost and modified Henderson models for Kabuli chickpea (KC), black sesame (BS), and white sesame (WS) seeds. The samples for conducting the adsorption and desorption tests …


Grains Research And Development Science Highlights 2015-17, Department Of Agriculture And Food Western Australia Jan 2017

Grains Research And Development Science Highlights 2015-17, Department Of Agriculture And Food Western Australia

All other publications

Western Australian grain production and industry value has quadrupled over the past 30 years, despite declining winter rainfall, more frost and high temperature events, acidifying soils and increasing input costs. Strong evidence links this productivity growth to R&D that has delivered genetically superior varieties, better agronomic practices and more reliable farming systems. Western Australian grain growers are innovators that rapidly adopt new technology which is increasingly sourced from a wider pool of national and global science, research and innovation. Continuing to push the productivity frontier is not only critical to grower’s profitability, it underpins the international competitiveness of our exports …


Nebraska Grazing Conference Proceedings, 2017, Center For Grassland Studies, University Of Nebraska-Lincoln Jan 2017

Nebraska Grazing Conference Proceedings, 2017, Center For Grassland Studies, University Of Nebraska-Lincoln

Nebraska Grazing Conference Proceedings

Fences and Water Points: Where They Should Go by Jim Gerrish

Beef Systems Initiative by Archie Clutter

Grass-based Health and the Ruminant Revolution by Peter Ballerstedt

The Good, Bad, and Ugly of Weedy Plants by Chris Helzer

2016 Leopold Conservation Award Winner by Nancy Peterson

Managing Grassland Vegetation to Benefit Livestock and Wildlife by Patricia Johnson

What is Plant Cover, and How Can We Manage it for Wildlife Needs? by Dwayne Elmore

Producer Panel: Annual Forages vs Row Crops Under Irrigation moderated by John Maddux

Producer Panel: Economics of Grazing Strategies moderated by Jim Jankins

It Costs How Much!? by …


Gene Silencing Of Argonaute5 Negatively Affects The Establishment Of The Legume-Rhizobia Symbiosis, Maria Del Rocio Reyero-Saavedra, Zhenzhen Qiao, Maria Del Socorro Sanchez-Correa, M. Enrique Diaz-Pineda, Jose L. Reyes, Alejandra A. Covarrubias, Marc Libault, Oswaldo Valdes-Lopez Jan 2017

Gene Silencing Of Argonaute5 Negatively Affects The Establishment Of The Legume-Rhizobia Symbiosis, Maria Del Rocio Reyero-Saavedra, Zhenzhen Qiao, Maria Del Socorro Sanchez-Correa, M. Enrique Diaz-Pineda, Jose L. Reyes, Alejandra A. Covarrubias, Marc Libault, Oswaldo Valdes-Lopez

Department of Agronomy and Horticulture: Faculty Publications

The establishment of the symbiosis between legumes and nitrogen-fixing rhizobia is finely regulated at the transcriptional, posttranscriptional and posttranslational levels. Argonaute5 (AGO5), a protein involved in RNA silencing, can bind both viral RNAs and microRNAs to control plant-microbe interactions and plant physiology. For instance, AGO5 regulates the systemic resistance of Arabidopsis against Potato Virus X as well as the pigmentation of soybean (Glycine max) seeds. Here, we show that AGO5 is also playing a central role in legume nodulation based on its preferential expression in common bean (Phaseolus vulgaris) and soybean roots and nodules. We also …


Using An Active-Optical Sensor To Develop An Optimal Ndvi Dynamic Model For High-Yield Rice Production (Yangtze, China), Xiaojun Liu, Richard B. Ferguson, Hengbiao Zheng, Qiang Cao, Yongchao Tian, Weixing Cao, Yan Zhu Jan 2017

Using An Active-Optical Sensor To Develop An Optimal Ndvi Dynamic Model For High-Yield Rice Production (Yangtze, China), Xiaojun Liu, Richard B. Ferguson, Hengbiao Zheng, Qiang Cao, Yongchao Tian, Weixing Cao, Yan Zhu

Department of Agronomy and Horticulture: Faculty Publications

The successful development of an optimal canopy vegetation index dynamic model for obtaining higher yield can offer a technical approach for real-time and nondestructive diagnosis of rice (Oryza sativa L) growth and nitrogen (N) nutrition status. In this study, multiple rice cultivars and N treatments of experimental plots were carried out to obtain: normalized difference vegetation index (NDVI), leaf area index (LAI), above-ground dry matter (DM), and grain yield (GY) data. The quantitative relationships between NDVI and these growth indices (e.g., LAI, DM and GY) were analyzed, showing positive correlations. Using the normalized modeling method, an appropriate NDVI simulation model …


Genotyping-By-Sequencing Derived High-Density Linkage Map And Its Application To Qtl Mapping Of Flag Leaf Traits In Bread Wheat, Waseem Hussain, P. Stephen Baenziger, Vikas Belamkar, Mary J. Guttieri, Jorge P. Venegas, Amanda Easterly, Ahmed Sallam, Jesse Poland Jan 2017

Genotyping-By-Sequencing Derived High-Density Linkage Map And Its Application To Qtl Mapping Of Flag Leaf Traits In Bread Wheat, Waseem Hussain, P. Stephen Baenziger, Vikas Belamkar, Mary J. Guttieri, Jorge P. Venegas, Amanda Easterly, Ahmed Sallam, Jesse Poland

Department of Agronomy and Horticulture: Faculty Publications

Winter wheat parents ‘Harry’ (drought tolerant) and ‘Wesley’ (drought susceptible) were used to develop a recombinant inbred population with future goals of identifying genomic regions associated with drought tolerance. To precisely map genomic regions, high-density linkage maps are a prerequisite. In this study genotyping-by-sequencing (GBS) was used to construct the high-density linkage map. The map contained 3,641 markers distributed on 21 chromosomes and spanned 1,959 cM with an average distance of 1.8 cM between markers. The constructed linkage map revealed strong collinearity in marker order across 21 chromosomes with POPSEQ-v2.0, which was based on a high-density linkage map. The reliability …


Validation Of Qtl Mapping And Transcriptome Profiling For Identification Of Candidate Genes Associated With Nitrogen Stress Tolerance In Sorghum, Malleswari Gelli, Anji Reddy Konda, Kan Liu, Chi Zhang, Thomas E. Clemente, David R. Holding, Ismail M. Dweikat Jan 2017

Validation Of Qtl Mapping And Transcriptome Profiling For Identification Of Candidate Genes Associated With Nitrogen Stress Tolerance In Sorghum, Malleswari Gelli, Anji Reddy Konda, Kan Liu, Chi Zhang, Thomas E. Clemente, David R. Holding, Ismail M. Dweikat

Department of Agronomy and Horticulture: Faculty Publications

Background: Quantitative trait loci (QTLs) detected in one mapping population may not be detected in other mapping populations at all the time. Therefore, before being used for marker assisted breeding, QTLs need to be validated in different environments and/or genetic backgrounds to rule out statistical anomalies. In this regard, we mapped the QTLs controlling various agronomic traits in a recombinant inbred line (RIL) population in response to Nitrogen (N) stress and validated these with the reported QTLs in our earlier study to find the stable and consistent QTLs across populations. Also, with Illumina RNA-sequencing we checked the differential expression of …


Editorial: Genomic Approaches For Improvement Of Understudied Grasses, Keenan Amundsen, Gautam Sarath, Teresa Donze-Reiner Jan 2017

Editorial: Genomic Approaches For Improvement Of Understudied Grasses, Keenan Amundsen, Gautam Sarath, Teresa Donze-Reiner

Department of Agronomy and Horticulture: Faculty Publications

Grasses are diverse, spanning native prairies to high-yielding grain cropping systems. They are valued for their beauty and useful for soil stabilization, pollution mitigation, biofuel production, nutritional value, and forage quality; grasses encompass the most important grain crops in the world. There are thousands of distinct grass species and many have promiscuous hybridization patterns, blurring species boundaries. Resources for advancing the science and knowledgebase of individual grass species or their unique characteristics varies, often proportional to their perceived value to society. For many grasses, limited genetic information hinders research progress. Presented in this research topic is a brief snapshot of …


Pollen-Mediated Gene Flow From Glyphosate-Resistant Common Waterhemp (Amaranthus Rudis Sauer): Consequences For The Dispersal Of Resistance Genes, Debalin Sarangi, Andrew J. Tyre, Eric L. Patterson, Todd A. Gaines, Suat Irmak, Stevan Z. Knezevic, John L. Lindquist, Amit J. Jhala Jan 2017

Pollen-Mediated Gene Flow From Glyphosate-Resistant Common Waterhemp (Amaranthus Rudis Sauer): Consequences For The Dispersal Of Resistance Genes, Debalin Sarangi, Andrew J. Tyre, Eric L. Patterson, Todd A. Gaines, Suat Irmak, Stevan Z. Knezevic, John L. Lindquist, Amit J. Jhala

Department of Agronomy and Horticulture: Faculty Publications

Gene flow is an important component in evolutionary biology; however, the role of gene flow in dispersal of herbicide-resistant alleles among weed populations is poorly understood. Field experiments were conducted at the University of Nebraska-Lincoln to quantify pollen-mediated gene flow (PMGF) from glyphosate-resistant (GR) to -susceptible (GS) common waterhemp using a concentric donorreceptor design. More than 130,000 common waterhemp plants were screened and 26,199 plants were confirmed resistant to glyphosate. Frequency of gene flow from all distances, directions, and years was estimated with a double exponential decay model using Generalized Nonlinear Model (package gnm) in R. PMGF declined by 50% …


Stress-Responsive Pathways And Small Rna Changes Distinguish Variable Developmental Phenotypes Caused By Msh1 Loss, Mon-Ray Shao, Sunil Kumar Kenchanmane Raju, John D. Laurie, Robersy Sanchez, Sally A. Mackenzie Jan 2017

Stress-Responsive Pathways And Small Rna Changes Distinguish Variable Developmental Phenotypes Caused By Msh1 Loss, Mon-Ray Shao, Sunil Kumar Kenchanmane Raju, John D. Laurie, Robersy Sanchez, Sally A. Mackenzie

Department of Agronomy and Horticulture: Faculty Publications

Background: Proper regulation of nuclear-encoded, organelle-targeted genes is crucial for plastid and mitochondrial function. Among these genes, MutS Homolog 1 (MSH1) is notable for generating an assortment of mutant phenotypes with varying degrees of penetrance and pleiotropy. Stronger phenotypes have been connected to stress tolerance and epigenetic changes, and in Arabidopsis T-DNA mutants, two generations of homozygosity with the msh1 insertion are required before severe phenotypes begin to emerge. These observations prompted us to examine how msh1 mutants contrast according to generation and phenotype by profiling their respective transcriptomes and small RNA populations.

Results: Using RNA-seq, we analyze …


The Role Of Tre6p And Snrk1 In Maize Early Kernel Development And Events Leading To Stress-Induced Kernel Abortion, Samuel W. Bledsoe, Clémence Henry, Cara A. Griffiths, Matthew J. Paul, Regina Feil, John E. Lunn, Mark Stitt, L. Mark Lagrimini Jan 2017

The Role Of Tre6p And Snrk1 In Maize Early Kernel Development And Events Leading To Stress-Induced Kernel Abortion, Samuel W. Bledsoe, Clémence Henry, Cara A. Griffiths, Matthew J. Paul, Regina Feil, John E. Lunn, Mark Stitt, L. Mark Lagrimini

Department of Agronomy and Horticulture: Faculty Publications

Background: Drought stress during flowering is a major contributor to yield loss in maize. Genetic and biotechnological improvement in yield sustainability requires an understanding of the mechanisms underpinning yield loss. Sucrose starvation has been proposed as the cause for kernel abortion; however, potential targets for genetic improvement have not been identified. Field and greenhouse drought studies with maize are expensive and it can be difficult to reproduce results; therefore, an in vitro kernel culture method is presented as a proxy for drought stress occurring at the time of flowering in maize (3 days after pollination). This method is used to …


Changes In Soil Microbial Communities After 10 Years Of Winter Wheat Cultivation Versus Fallow In An Organic-Poor Soil In The Loess Plateau Of China, Hui Tian, Hui Wang, Xiaoli Hui, Zhaohui Wang, Rhae A. Drijber, Jinshan Liu Jan 2017

Changes In Soil Microbial Communities After 10 Years Of Winter Wheat Cultivation Versus Fallow In An Organic-Poor Soil In The Loess Plateau Of China, Hui Tian, Hui Wang, Xiaoli Hui, Zhaohui Wang, Rhae A. Drijber, Jinshan Liu

Department of Agronomy and Horticulture: Faculty Publications

Agricultural management methods, such as cultivation or fallowing, have led to significant changes in soil fertility and hence, crop yield. Such changes may have stemmed from changes in soil microbial communities and associated biogeochemical processes. This phenomenon is particularly true in organic-poor soil in the Loess Plateau of China. In this study, we examined three existing soil management regimes as part of a 10-year field experiment and evaluated their effects on fungal and bacterial community structures by performing high-throughput 454 pyrosequencing. These management regimes were (i) fertilized winter wheat (Triticum aestivum L.) (FW), (ii) continuous natural fallow with weeds …


Allelic Variants Of Oshkt1;1 Underlie The Divergence Between Indica And Japonica Subspecies Of Rice (Oryza Sativa) For Root Sodium Content, Malachy T. Campbell, Nonoy Bandillo, Fouad Razzaq A. Al Shiblawi, Sandeep Sharma, Kan Liu, Qian Du, Aaron J. Schmitz, Chi Zhang, Anne-Alienor Very, Aaron J. Lorenz, Harkamal Walia Jan 2017

Allelic Variants Of Oshkt1;1 Underlie The Divergence Between Indica And Japonica Subspecies Of Rice (Oryza Sativa) For Root Sodium Content, Malachy T. Campbell, Nonoy Bandillo, Fouad Razzaq A. Al Shiblawi, Sandeep Sharma, Kan Liu, Qian Du, Aaron J. Schmitz, Chi Zhang, Anne-Alienor Very, Aaron J. Lorenz, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

Salinity is a major factor limiting crop productivity. Rice (Oryza sativa), a staple crop for the majority of the world, is highly sensitive to salinity stress. To discover novel sources of genetic variation for salt tolerance-related traits in rice, we screened 390 diverse accessions under 14 days of moderate (9 dS m-1) salinity. In this study, shoot growth responses to moderate levels of salinity were independent of tissue Na+ content. A significant difference in root Na+ content was observed between the major subpopulations of rice, with indica accessions displaying higher root Na+ and japonica …


Effects Of Post Eviction Resettlement On Land-Use And Cover Change In Uganda’S Oil Exploration Areas, Joseph Ssekandi, John Mburu, Oliver Wasonga, Laban Macopiyo, Charles A. Francis Jan 2017

Effects Of Post Eviction Resettlement On Land-Use And Cover Change In Uganda’S Oil Exploration Areas, Joseph Ssekandi, John Mburu, Oliver Wasonga, Laban Macopiyo, Charles A. Francis

Department of Agronomy and Horticulture: Faculty Publications

Evaluation of the changes in land use and land cover change (LULCC) in respect to oil exploration across the Albertine region in Uganda has been focused around the exploration areas and protected areas, with no attention to the potential impacts of evictees’ activities on resettled areas. This study used LANDSAT images to analyze the land use and land cover changes (LULCC) among the period before eviction (2002 and 2005) at the climax of eviction and resettlements (2005-2011), and during the post-resettlement period (2011-2015) to quantify the impacts of resettlements on the environment. LANDSAT images were processed using ERDAS IMAGINE software …


Changes In Soil Microbial Communities After 10 Years Of Winter Wheat Cultivation Versus Fallow In An Organic-Poor Soil In The Loess Plateau Of China, Hui Tian, Hui Wang, Xiaoli Hui, Zhaohui Wang, Rhae A. Drijber, Jinshan Liu Jan 2017

Changes In Soil Microbial Communities After 10 Years Of Winter Wheat Cultivation Versus Fallow In An Organic-Poor Soil In The Loess Plateau Of China, Hui Tian, Hui Wang, Xiaoli Hui, Zhaohui Wang, Rhae A. Drijber, Jinshan Liu

Department of Agronomy and Horticulture: Faculty Publications

Agricultural management methods, such as cultivation or fallowing, have led to significant changes in soil fertility and hence, crop yield. Such changes may have stemmed from changes in soil microbial communities and associated biogeochemical processes. This phenomenon is particularly true in organic-poor soil in the Loess Plateau of China. In this study, we examined three existing soil management regimes as part of a 10-year field experiment and evaluated their effects on fungal and bacterial community structures by performing high-throughput 454 pyrosequencing. These management regimes were (i) fertilized winter wheat (Triticum aestivum L.) (FW), (ii) continuous …


Robust Spatial Frameworks For Leveraging Research On Sustainable Crop Intensification, Patricio Grassini, Cameron M. Pittelkow, Kenneth Cassman, Haishun S. Yang, Sotirios Archontoulis, Mark Licht, Kendall R. Lamkey, Ignacio A. Ciampitti, Jeffrey A. Coulter, Sylvie M. Brouder, Jeffrey J. Volenec, Noemi Guindin-Garcia Jan 2017

Robust Spatial Frameworks For Leveraging Research On Sustainable Crop Intensification, Patricio Grassini, Cameron M. Pittelkow, Kenneth Cassman, Haishun S. Yang, Sotirios Archontoulis, Mark Licht, Kendall R. Lamkey, Ignacio A. Ciampitti, Jeffrey A. Coulter, Sylvie M. Brouder, Jeffrey J. Volenec, Noemi Guindin-Garcia

Department of Agronomy and Horticulture: Faculty Publications

Meeting demand for food, fiber, feed, and fuel in a world with 9.7 billion people by 2050 without negative environmental impact is the greatest scientific challenge facing humanity. We hypothesize that this challenge can only be met with current and emerging technologies if guided by proactive use of a broad array of relevant data and geospatial scaling approaches to ensure local to global relevance for setting research priorities and implementing agricultural systems responsive to real-time status of weather, soils, crops, and markets. Despite increasing availability of field-scale agricultural data, robust spatial frameworks are lacking to convert these data into actionable …


Genome-Guided Phylo-Transcriptomic Methods And The Nuclear Phylogentic Tree Of The Paniceae Grasses, Jacob D. Washburn, James C. Schnable, Gavin C. Conant, Thomas P. Brutnell, Ying Shao, Yang Zhang, Martha Ludwig, Gerrit Davidse, J. Chris Pires Jan 2017

Genome-Guided Phylo-Transcriptomic Methods And The Nuclear Phylogentic Tree Of The Paniceae Grasses, Jacob D. Washburn, James C. Schnable, Gavin C. Conant, Thomas P. Brutnell, Ying Shao, Yang Zhang, Martha Ludwig, Gerrit Davidse, J. Chris Pires

Department of Agronomy and Horticulture: Faculty Publications

The past few years have witnessed a paradigm shift in molecular systematics from phylogenetic methods (using one or a few genes) to those that can be described as phylogenomics (phylogenetic inference with entire genomes). One approach that has recently emerged is phylo-transcriptomics (transcriptome-based phylogenetic inference). As in any phylogenetics experiment, accurate orthology inference is critical to phylo-transcriptomics. To date, most analyses have inferred orthology based either on pure sequence similarity or using gene-tree approaches. The use of conserved genome synteny in orthology detection has been relatively under-employed in phylogenetics, mainly due to the cost of sequencing genomes. While current trends …


Genetic Basis Of The Very Short Life Cycle Of ‘Apogee’ Wheat, Genqiao Li, Rungravee Boontung, Carol Powers, Vikas Belamkar, Tianrong Huang, Fang Miao, P. Stephen Baenziger, Liuling Yan Jan 2017

Genetic Basis Of The Very Short Life Cycle Of ‘Apogee’ Wheat, Genqiao Li, Rungravee Boontung, Carol Powers, Vikas Belamkar, Tianrong Huang, Fang Miao, P. Stephen Baenziger, Liuling Yan

Department of Agronomy and Horticulture: Faculty Publications

Background: ‘Apogee’ has a very short life cycle among wheat cultivars (flowering 25 days after planting under a long day and without vernalization), and it is a unique genetic material that can be used to accelerate cycling breeding lines. However, little is known about the genetic basis of the super-short life of Apogee wheat.

Results: In this study, Apogee was crossed with a strong winter wheat cultivar ‘Overland’, and 858 F2 plants were generated and tested in a greenhouse under constant warm temperature and long days. Apogee wheat was found to have the early alleles for four flowering time …


Genome-Wide Characterization Of Non-Reference Transposable Element Insertion Polymorphisms Reveals Genetic Diversity In Tropical And Temperate Maize, Xianjun Lai, James C. Schnable, Zhengqiao Liao, Jie Xu, Gengyun Zhang, Chuan Li, Erliang Hu, Tingzhao Rong, Yunbi Xu, Yanli Li Jan 2017

Genome-Wide Characterization Of Non-Reference Transposable Element Insertion Polymorphisms Reveals Genetic Diversity In Tropical And Temperate Maize, Xianjun Lai, James C. Schnable, Zhengqiao Liao, Jie Xu, Gengyun Zhang, Chuan Li, Erliang Hu, Tingzhao Rong, Yunbi Xu, Yanli Li

Department of Agronomy and Horticulture: Faculty Publications

Background: Maize was originally domesticated in a tropical environment but is now widely cultivated at temperate latitudes. Temperate and tropical maize populations have diverged both genotypically and phenotypically. Tropical maize lines grown in temperate environments usually exhibit delayed flowering, pollination, and seed set, which reduces their grain yield relative to temperate adapted maize lines. One potential mechanism by which temperate maize may have adapted to a new environment is novel transposable element insertions, which can influence gene regulation. Recent advances in sequencing technology have made it possible to study variation in transposon content and insertion location in large sets of …


Population Structure And Genetic Diversity Of Bromus Tectorum Within The Small Grain Production Region Of The Pacific Northwest, Nevin C. Lawrence, Amber L. Hauvermale, Amit Dhingra, Ian C. Burke Jan 2017

Population Structure And Genetic Diversity Of Bromus Tectorum Within The Small Grain Production Region Of The Pacific Northwest, Nevin C. Lawrence, Amber L. Hauvermale, Amit Dhingra, Ian C. Burke

Department of Agronomy and Horticulture: Faculty Publications

Bromus tectorum L. is an invasive winter annual grass naturalized across the United States. Numerous studies have investigated B. tectorum population structure and genetics in the context of B. tectorum as an ecological invader of natural areas and rangeland. Despite the wealth of information regarding B. tectorum, previous studies have not focused on, or made comparisons to, B. tectorum as it persists in individual agroecosystems. The objectives of this study were to assess the genetic diversity and structure, the occurrence of generalist and specialist genotypes, and the influence of climate on distribution of B. tectorum sourced exclusively from within …


A Transcriptome‑Snp‑Derived Linkage Map Of Apios Americana (Potato Bean) Provides Insights About Genome Re‑Organization And Synteny Conservation In The Phaseoloid Legumes, Jugpreet Singh, Scott R. Kalberer, Vikas Belamkar, Teshale Assefa, Matthew N. Nelson, Andrew D. Farmer, William J. Blackmon, Steven B. Cannon Jan 2017

A Transcriptome‑Snp‑Derived Linkage Map Of Apios Americana (Potato Bean) Provides Insights About Genome Re‑Organization And Synteny Conservation In The Phaseoloid Legumes, Jugpreet Singh, Scott R. Kalberer, Vikas Belamkar, Teshale Assefa, Matthew N. Nelson, Andrew D. Farmer, William J. Blackmon, Steven B. Cannon

Department of Agronomy and Horticulture: Faculty Publications

Apios (Apios americana; “apios”), a tuberous perennial legume in the Phaseoleae tribe, was widely used as a food by Native Americans. Work in the last 40 years has led to several improved breeding lines. Aspects of the pollination biology (complex floral structure and tripping mechanism) have made controlled crosses difficult, and the previous reports indicated that the plant is likely primarily an outcrosser. We used a pseudo-testcross strategy to construct a genetic map specific to the maternal parent. The map was built using single-nucleotide polymorphism markers identified by comparing the expressed sequences of individuals in the mapping population …


Genetic Diversity Of Danthonia Spicata (L.) Beauv. Based On Genomic Simple Sequence Repeat Markers, Chandra S. Thammina, Keenan Amundsen, Shaun B. Bushman, Matthew H. Kramer, Scott E. Warnke Jan 2017

Genetic Diversity Of Danthonia Spicata (L.) Beauv. Based On Genomic Simple Sequence Repeat Markers, Chandra S. Thammina, Keenan Amundsen, Shaun B. Bushman, Matthew H. Kramer, Scott E. Warnke

Department of Agronomy and Horticulture: Faculty Publications

Danthonia spicata (L.) Beauv., commonly known as poverty oatgrass, is a perennial bunch-type grass native to North America. D. spicata is often found in low input turfgrass areas on the East Coast of the United States and has potential for development as a new native low input turfgrass species. Roche 454 sequenced randomly sheared genomic DNA reads of D. spicata were mined for SSR markers using the MIcroSAtellite identification tool. A total of 66,553 singlet sequences (approximately 37.5 Mbp) were examined, and 3454 SSR markers were identified. Trinucleotide motifs with greater than six repeats and possessing unique PCR priming sites …


Can Cover Crop Use Allow Increased Levels Of Corn Residue Removal For Biofuel In Irrigated And Rainfed Systems?, S. J. Ruis, Humberto Blanco-Canqui, Paul J. Jasa, R. B. Ferguson, G. Slater Jan 2017

Can Cover Crop Use Allow Increased Levels Of Corn Residue Removal For Biofuel In Irrigated And Rainfed Systems?, S. J. Ruis, Humberto Blanco-Canqui, Paul J. Jasa, R. B. Ferguson, G. Slater

Department of Agronomy and Horticulture: Faculty Publications

Corn (Zea mays L.) residue removal at high rates can result in negative impacts to soil ecosystem services. The use of cover crops could be a potential strategy to ameliorate any adverse effects of residue removal while allowing greater removal levels. Hence, the objective of this study was to determine changes in water erosion potential, soil organic C (SOC) and total N concentration, and crop yields under early- and late-terminated cover crop (CC) combined with five levels of corn residue removal after 3 years on rainfed and irrigated no-till continuous corn in Nebraska. Treatments were no CC, early- and …


Using An Unmanned Aerial Vehicle To Evaluate Nitrogen Variability And Height Effect With An Active Crop Canopy Sensor, Brian Krienke, Richard B. Ferguson, Michael Schlemmer, Kyle Holland, David B. Marx, Kent M. Eskridge Jan 2017

Using An Unmanned Aerial Vehicle To Evaluate Nitrogen Variability And Height Effect With An Active Crop Canopy Sensor, Brian Krienke, Richard B. Ferguson, Michael Schlemmer, Kyle Holland, David B. Marx, Kent M. Eskridge

Department of Agronomy and Horticulture: Faculty Publications

Ground-based active sensors have been used in the past with success in detecting nitrogen (N) variability within maize production systems. The use of unmanned aerial vehicles (UAVs) presents an opportunity to evaluate N variability with unique advantages compared to ground-based systems. The objectives of this study were to: determine if a UAV was a suitable platform for use with an active crop canopy sensor to monitor in-season N status of maize, if UAV’s were a suitable platform, is the UAV and active sensor platform a suitable substitute for current handheld methods, and is there a height effect that may be …


Modeling Pollen-Mediated Gene Flow From Glyphosate-Resistant To -Susceptible Giant Ragweed (Ambrosia Trifida L.) Under Field Conditions, Zahoor A. Ganie, Amit J. Jhala Jan 2017

Modeling Pollen-Mediated Gene Flow From Glyphosate-Resistant To -Susceptible Giant Ragweed (Ambrosia Trifida L.) Under Field Conditions, Zahoor A. Ganie, Amit J. Jhala

Department of Agronomy and Horticulture: Faculty Publications

A field experiment was conducted to quantify pollen mediated gene flow (PMGF) from glyphosateresistant (GR) to glyphosate-susceptible (GS) giant ragweed under simulated field conditions using glyphosate resistance as a selective marker. Field experiments were conducted in a concentric design with the GR giant ragweed pollen source planted in the center and GS giant ragweed pollen receptors surrounding the center in eight directional blocks at specified distances (between 0.1 and 35 m in cardinal and ordinal directions; and additional 50 m for ordinal directions). Seeds of GS giant ragweed were harvested from the pollen receptor blocks and a total of 100,938 …


Metabolism Of 2,4-Dichlorophenoxyacetic Acid Contributes To Resistance In A Common Waterhemp (Amaranthus Tuberculatus) Population, Marcelo R. A. Figueiredo, Lacy J. Leibhart, Zachary J. Reicher, Patrick J. Tranel, Scott J. Nissen, Philip Westra, Mark L. Bernards, Greg R. Kruger, Todd A. Gaines, Mithila Jugulam Jan 2017

Metabolism Of 2,4-Dichlorophenoxyacetic Acid Contributes To Resistance In A Common Waterhemp (Amaranthus Tuberculatus) Population, Marcelo R. A. Figueiredo, Lacy J. Leibhart, Zachary J. Reicher, Patrick J. Tranel, Scott J. Nissen, Philip Westra, Mark L. Bernards, Greg R. Kruger, Todd A. Gaines, Mithila Jugulam

Department of Agronomy and Horticulture: Faculty Publications

BACKGROUND: Synthetic auxins such as 2,4-D have been widely used for selective control of broadleaf weeds since the mid-1940s. In 2009, an Amaranthus tuberculatus (common waterhemp) population with 10-fold resistance to 2,4-D was found in Nebraska, USA. The 2,4-D resistance mechanism was examined by conducting [14C] 2,4-D absorption, translocation and metabolism experiments.

RESULTS: No differences were found in 2,4-D absorption or translocation between the resistant and susceptible A. tuberculatus. Resistant plants metabolized [14C] 2,4-D more rapidly than did susceptible plants. The half-life of [14C] 2,4-D in susceptible plants was 105 h, compared to …


Dissecting The Genetic Basis Of Local Adaptation In Soybean, Nonoy B. Bandillo, Justin E. Anderson, Michael B. Kantar, Robert M. Stupar, James E. Specht, George L. Graef, Aaron J. Lorenz Jan 2017

Dissecting The Genetic Basis Of Local Adaptation In Soybean, Nonoy B. Bandillo, Justin E. Anderson, Michael B. Kantar, Robert M. Stupar, James E. Specht, George L. Graef, Aaron J. Lorenz

Department of Agronomy and Horticulture: Faculty Publications

Soybean (Glycine max) is the most widely grown oilseed in the world and is an important source of protein for both humans and livestock. Soybean is widely adapted to both temperate and tropical regions, but a changing climate demands a better understanding of adaptation to specific environmental conditions. Here, we explore genetic variation in a collection of 3,012 georeferenced, locally adapted landraces from a broad geographical range to help elucidate the genetic basis of local adaptation. We used geographic origin, environmental data and dense genome-wide SNP data to perform an environmental association analysis and discover loci displaying steep …


Assessment Of Canopy Chlorophyll Content Retrieval In Maize And Soybean: Implications Of Hysteresis On The Development Of Generic Algorithms, Yi Peng, Anthony L. Nguy-Robertson, Timothy J. Arkebauer, Anatoly A. Gitelson Jan 2017

Assessment Of Canopy Chlorophyll Content Retrieval In Maize And Soybean: Implications Of Hysteresis On The Development Of Generic Algorithms, Yi Peng, Anthony L. Nguy-Robertson, Timothy J. Arkebauer, Anatoly A. Gitelson

Department of Agronomy and Horticulture: Faculty Publications

Canopy chlorophyll content (Chl) closely relates to plant photosynthetic capacity, nitrogen status and productivity. The goal of this study is to develop remote sensing techniques for accurate estimation of canopy Chl during the entire growing season without re-parameterization of algorithms for two contrasting crop species, maize and soybean. These two crops represent different biochemical mechanisms of photosynthesis, leaf structure and canopy architecture. The relationships between canopy Chl and reflectance, collected at close range and resampled to bands of the Multi Spectral Instrument (MSI) aboard Sentinel-2, were analyzed in samples taken across the entirety of the growing seasons in three irrigated …


Can Yield Gap Analysis Be Used To Inform R & D Prioritisation?, P. A. J. Van Oort, K. Saito, I. Dieng, P. Grassini, K. G. Cassman, M. K. Van Ittersum Jan 2017

Can Yield Gap Analysis Be Used To Inform R & D Prioritisation?, P. A. J. Van Oort, K. Saito, I. Dieng, P. Grassini, K. G. Cassman, M. K. Van Ittersum

Department of Agronomy and Horticulture: Faculty Publications

The phrase “biggest bang for a buck” is associated with the policy making question that governments and development agencies face: “Where and which crops should receive highest priority for improving local and global food supply?”. A first step of prioritisation is to identify region x crop combinations for which high impact can be anticipated. We developed a new method for this prioritisation exercise and applied it to data from the Global Yield Gap and Water Productivity Atlas (GYGA). Our prioritisation distinguishes between two policy objectives (humanitarian and economic) and builds upon the relative yield gap and climate risk. Results of …


Multisite Evaluation Of Apex For Water Quality: Ii. Regional Parameterization, Nathan O. Nelson, Claire Baffaut, John A. Lory, G.M.M.M. Anomaa Senaviratne, Ammar B. Bhandari, Ranjith P. Udawatta, Daniel W. Sweeney, Matt J. Helmers, Mike W. Van Liew, Antonio P. Mallarino, Charles S. Wortmann Jan 2017

Multisite Evaluation Of Apex For Water Quality: Ii. Regional Parameterization, Nathan O. Nelson, Claire Baffaut, John A. Lory, G.M.M.M. Anomaa Senaviratne, Ammar B. Bhandari, Ranjith P. Udawatta, Daniel W. Sweeney, Matt J. Helmers, Mike W. Van Liew, Antonio P. Mallarino, Charles S. Wortmann

Department of Agronomy and Horticulture: Faculty Publications

Phosphorus (P) Index assessment requires independent estimates of long-term average annual P loss from fields, representing multiple climatic scenarios, management practices, and landscape positions. Because currently available measured data are insufficient to evaluate P Index performance, calibrated and validated process-based models have been proposed as tools to generate the required data. The objectives of this research were to develop a regional parameterization for the Agricultural Policy Environmental eXtender (APEX) model to estimate edgeof- field runoff, sediment, and P losses in restricted-layer soils of Missouri and Kansas and to assess the performance of this parameterization using monitoring data from multiple sites …