Open Access. Powered by Scholars. Published by Universities.®
Organismal Biological Physiology Commons™
Open Access. Powered by Scholars. Published by Universities.®
- Discipline
-
- Genetics (3)
- Genetics and Genomics (3)
- Bacteriology (2)
- Biology (2)
- Computational Biology (2)
-
- Environmental Microbiology and Microbial Ecology (2)
- Genomics (2)
- Medicine and Health Sciences (2)
- Molecular Genetics (2)
- Other Genetics and Genomics (2)
- Cell Biology (1)
- Cell and Developmental Biology (1)
- Diseases (1)
- Genetic Structures (1)
- Marine Biology (1)
- Medical Sciences (1)
- Respiratory Tract Diseases (1)
- Keyword
-
- Dorso-ventral eye patterning (2)
- Drosophila eye (2)
- GATA-1 (2)
- Homothorax (2)
- Pannier (2)
-
- Retinal determination (2)
- Teashirt (2)
- Wg Signaling (2)
- Archaeal ammonia oxidation (1)
- CF (1)
- Crenarchaeota (1)
- Cystic fibrosis (1)
- Liquid chromatography (1)
- MudPIT (1)
- Multidimensional protein identification technology (1)
- Nitrite oxidation (1)
- Nitrogen fixation (1)
- Nitrospira (1)
- Quorum sensing (1)
- Subsurface (1)
- Toll-like receptor (1)
- Publication
- File Type
Articles 1 - 7 of 7
Full-Text Articles in Organismal Biological Physiology
Dorsal Eye Selector Pannier (Pnr) Suppresses The Eye Fate To Define Dorsal Margin Of The Drosophila Eye, Sarah M. Oros, Meghana Tare, Madhuri Kango-Singh, Amit Singh
Dorsal Eye Selector Pannier (Pnr) Suppresses The Eye Fate To Define Dorsal Margin Of The Drosophila Eye, Sarah M. Oros, Meghana Tare, Madhuri Kango-Singh, Amit Singh
Madhuri Kango-Singh
Axial patterning is crucial for organogenesis. During Drosophila eye development, dorso-ventral (DV) axis determination is the first lineage restriction event. The eye primordium begins with a default ventral fate, on which the dorsal eye fate is established by expression of the GATA-1 transcription factor pannier (pnr). Earlier, it was suggested that loss of pnr function induces enlargement in the dorsal eye due to ectopic equator formation. Interestingly, we found that in addition to regulating DV patterning, pnr suppresses the eye fate by downregulating the core retinal determination genes eyes absent (eya), sine oculis (so) and dacshund (dac) to define the …
Dorsal Eye Selector Pannier (Pnr) Suppresses The Eye Fate To Define Dorsal Margin Of The Drosophila Eye, Sarah M. Oros, Meghana Tare, Madhuri Kango-Singh, Amit Singh
Dorsal Eye Selector Pannier (Pnr) Suppresses The Eye Fate To Define Dorsal Margin Of The Drosophila Eye, Sarah M. Oros, Meghana Tare, Madhuri Kango-Singh, Amit Singh
Amit Singh
Axial patterning is crucial for organogenesis. During Drosophila eye development, dorso-ventral (DV) axis determination is the first lineage restriction event. The eye primordium begins with a default ventral fate, on which the dorsal eye fate is established by expression of the GATA-1 transcription factor pannier (pnr). Earlier, it was suggested that loss of pnr function induces enlargement in the dorsal eye due to ectopic equator formation. Interestingly, we found that in addition to regulating DV patterning, pnr suppresses the eye fate by downregulating the core retinal determination genes eyes absent (eya), sine oculis (so) and dacshund (dac) to define the …
Higher-Level Production Of Volatile Fatty Acids In Vitro By Chicken Gut Microbiotas Than By Human Gut Microbiotas As Determined By Functional Analyses, Fang Lei, Yeshi Yin, Yuezhu Wang, Bo Deng, Hongwei Yu, Lanjuan Li, Charlie Xiang, Shengyue Wang, Baoli Zhu, Xin Wang
Higher-Level Production Of Volatile Fatty Acids In Vitro By Chicken Gut Microbiotas Than By Human Gut Microbiotas As Determined By Functional Analyses, Fang Lei, Yeshi Yin, Yuezhu Wang, Bo Deng, Hongwei Yu, Lanjuan Li, Charlie Xiang, Shengyue Wang, Baoli Zhu, Xin Wang
Hongwei Yu
The aim of this study was to determine the relationship between the composition and function of gut microbiota. Here, we compared the bacterial compositions and fermentation metabolites of human and chicken gut microbiotas. Results generated by quantitative PCR (qPCR) and 454 pyrosequencing of the 16S rRNA gene V3 region showed the compositions of human and chicken microbiotas to be markedly different, with chicken cecal microbiotas displaying more diversity than human fecal microbiotas. The nutrient requirements of each microbiota growing under batch and chemostat conditions were analyzed. The results showed that chicken cecal microbiotas required simple sugars and peptides to maintain …
The Mycoplasma Genitalium Mg_454 Gene Product Resists Killing By Organic Hydroperoxides, Sankaralingam Saikolappan, Smitha Sasindran, Hongwei Yu, Joel Basema, Subramanian Dhandayuthapani
The Mycoplasma Genitalium Mg_454 Gene Product Resists Killing By Organic Hydroperoxides, Sankaralingam Saikolappan, Smitha Sasindran, Hongwei Yu, Joel Basema, Subramanian Dhandayuthapani
Hongwei Yu
Mycoplasma genitalium is the smallest self-replicating organism and a successful human pathogen associated with a range of genitourinary maladies. As a consequence of its restricted genome size, genes that are highly conserved in other bacteria are absent in M. genitalium. Significantly, genes that encode antioxidants like superoxide dismutase and catalase-peroxidase are lacking. Nevertheless, comparative genomics has revealed that MG_454 of M. genitalium encodes a protein with putative function as an organic hydroperoxide reductase (Ohr). In this study, we found that an M. genitalium transposon mutant that lacks expression of MG_454 was sensitive to killing by t-butyl hydroperoxide and cumene hydroperoxide. …
Lipotoxin F Of Pseudomonas Aeruginosa Is An Algu-Dependent And Alginate-Independent Outer Membrane Protein Involved In Resistance To Oxidative Stress And Adhesion To A549 Human Lung Epithelia, F. Damron, Jennifer Napper, M. Teter, Hongwei Yu
Lipotoxin F Of Pseudomonas Aeruginosa Is An Algu-Dependent And Alginate-Independent Outer Membrane Protein Involved In Resistance To Oxidative Stress And Adhesion To A549 Human Lung Epithelia, F. Damron, Jennifer Napper, M. Teter, Hongwei Yu
Hongwei Yu
Chronic lung infection with P. aeruginosa and excessive neutrophil-associated inflammation are major causes of morbidity and mortality in patients with cystic fibrosis (CF). Overproduction of an exopolysaccharide known as alginate leads to the formation of mucoid biofilms that are resistant to antibiotics and host defences. Alginate overproduction or mucoidy is controlled by a stress-related ECF sigma factor AlgU/T. Mutation in the anti-sigma factor MucA is a known mechanism for conversion to mucoidy. Recently, we showed that inactivation of a kinase (KinB) in nonmucoid strain PAO1 results in overproduction of alginate. Here, we report the initial characterization of lipotoxin F (LptF, …
Potential For Nitrogen Fixation And Nitrification In The Granite-Hosted Subsurface At Henderson Mine, Co, Elizabeth D. Swanner, Alexis S. Templeton
Potential For Nitrogen Fixation And Nitrification In The Granite-Hosted Subsurface At Henderson Mine, Co, Elizabeth D. Swanner, Alexis S. Templeton
Elizabeth D. Swanner
The existence of life in the deep terrestrial subsurface is established, yet few studies have investigated the origin of nitrogen that supports deep life. Previously, 16S rRNA gene surveys cataloged a diverse microbial community in subsurface fluids draining from boreholes 3000 feet deep at Henderson Mine, CO, USA (Sahl et al., 2008). The prior characterization of the fluid chemistry and microbial community forms the basis for the further investigation here of the source of NH4+. The reported fluid chemistry included N2, NH4+ (5–112 μM), NO2− (27–48 μM), and NO3− (17–72 μM). In this study, the correlation between low NH4+ concentrations …
Structured Multiple Endosymbiosis Of Bacteria And Archaea In A Ciliate From Marine Sulfidic Sediments: A Survival Mechanism In Low Oxygen, Sulfidic Sediments?, Virginia P. Edgcomb, Edward R. Leadbetter, William A. Bourland, David Beaudoin, Joan M. Bernhard
Structured Multiple Endosymbiosis Of Bacteria And Archaea In A Ciliate From Marine Sulfidic Sediments: A Survival Mechanism In Low Oxygen, Sulfidic Sediments?, Virginia P. Edgcomb, Edward R. Leadbetter, William A. Bourland, David Beaudoin, Joan M. Bernhard
William Bourland
Marine micro-oxic to sulfidic environments are sites of intensive biogeochemical cycling and elemental sequestration, where prokaryotes are major driving forces mediating carbon, nitrogen, sulfur, phosphorus, and metal cycles, important from both biogeochemical and evolutionary perspectives. Associations between single-celled eukaryotes and bacteria and/or archaea are common in such habitats. Here we describe a ciliate common in the micro-oxic to anoxic, typically sulfidic, sediments of Santa Barbara Basin (CA, USA). The ciliate is 95% similar to Parduzcia orbis (18S rRNA). Transmission electron micrographs reveal clusters of at least three different endobiont types organized within membrane-bound sub-cellular regions. Catalyzed reporter deposition–fluorescent in situ …