Marine Biology Commons^™

Variability In The Vertical Distributions Of Mesopelagic Fishes: Effect Of Body Size, Season, And Sampling Strategy On The Characterization Of Diel Vertical Migration, Brandon A. Brule

All HCAS Student Capstones, Theses, and Dissertations

Diel‌ ‌vertical‌ ‌migration,‌ or DVM, ‌is‌ ‌defined‌ ‌as‌ ‌the‌ large-scale changes in the depth distribution of a species or an assemblage with respect to the time of day. DVM‌ ‌is‌ ‌the‌ ‌largest‌ ‌active movement‌ ‌of‌ ‌biomass‌ on Earth, driven by the need for food balanced against predator avoidance and metabolic constraints. Asynchronous‌ ‌diel‌ ‌vertical‌ ‌migration, in the context of this study,‌ ‌refers‌ ‌to‌ the phenomenon where only a portion of a species’ population migrates upwards at night while others remain at depth. ‌The‌ extent that factors such as temporal variation, ontogenic variation, and methodological variation explain this migratory pattern is …

A Genomic Investigation Of Divergence Between Tuna Species, Pavel V. Dimens

Dissertations

Effective management and conservation of marine pelagic fishes is heavily dependent on a robust understanding of their population structure, their evolutionary history, and the delineation of appropriate management units. The Yellowfin tuna (Thunnus albacares) and the Blackfin tuna (Thunnus atlanticus) are two exploited epipelagic marine species with overlapping ranges in the tropical and sub-tropical Atlantic Ocean. This work analyzed genome-wide genetic variation of both species in the Atlantic basin to investigate the occurrence of population subdivision and adaptive variation. A de novo assembly of the Blackfin tuna genome was generated using Illumina paired-end sequencing data and …

Evaluating The Impact Of Intersecting Research And Outreach Marine Science Programs On Elementary And Undergraduate Students, Randi J. Sims

All Theses

Climate change is one of the most destructive forces our ocean is currently experiencing. Despite this, many students are not taught the basics of climate change science and ocean literacy in public school systems. My work seeks to combat these deficits through educational experiences in marine science for undergraduate and local elementary students through three studies incorporating marine-science based research and outreach. (1) Through undergraduate marine science research and outreach, students enrolled for long durations or with positive mentorship increased their conceptual understanding of marine science concepts, altered their attitudes towards climate change and science, and were more likely to …

Effects Of Shoreline Development And Freshwater Discharge On Nekton Assemblage And Trophic Structure In A Northern Gulf Of Mexico Estuary, Glenn Schumacher

Master's Theses

Coastal salt marshes support a diversity of nekton and facilitate critical ecosystem functions but are threatened by shoreline development and climate change. Therefore, coastal ecosystem managers have begun incentivizing the use of living shorelines (LS), erosion control structures incorporating native plantings, to mitigate ecological consequences of marsh loss. However, post-restoration climate changes may shift habitat templates and negate positive effects of ecosystem restoration. I evaluated the ecology nekton along LS, natural marshes, hardened shorelines and greyed shorelines within Biloxi Bay, Mississippi, during a high freshwater discharge (HFD) period by comparing nekton assemblage (using species richness, Shannon-Wiener diversity, and relative abundance), …

Modeling Life History And Population Dynamics Of American Lobster And Atlantic Sea Scallops In A Warming Gulf Of Maine, Cameron T. Hodgdon

Electronic Theses and Dissertations

Climate change is impacting many marine species distributions, life histories, and behaviors, as well as their associated fisheries and overall production. This is perhaps especially true for the Gulf of Maine (GOM). Here, warming rates are exceeding a vast majority of the world’s oceans. This highly dynamic system supports myriad species, but is both economically recognized and culturally known for its Atlantic sea scallop (Placopecten magellanicus) and American lobster (Homarus americanus) fisheries. This dissertation examines the influence of regional climate change on these species in an effort to predict how these stocks and their fisheries may …

The Effect Of Post-Harvest Storage Temperature And Drying Method On The Pathogen Load Of Edible Kelp, Jessica Vorse

All Theses And Dissertations

The American seaweed industry is growing, primarily into the edible sector, and as a result, more seaweed products are available for human consumption. It is necessary to evaluate the safety of industry’s current post-harvest storage and processing methods to ensure the risk of foodborne pathogens on edible seaweed remains low. We evaluated the pathogen load of edible kelp post-harvest under three different storage temperatures (4˚C, 10˚C, 20˚C) and two different drying methods (air- and freeze-drying). The focal pathogens for this project were six of the most common food-associated pathogens in the United States: Listeria monocytogenes, Salmonella enterica, Staphylococcus aureus, pathogenic …

Evaluation Of Nearshore Carbonate Chemistry Within Major Navigational Inlets Of The Kristin Jacobs Coral Reef Ecosystem Conservation Area, Harrison Davis

All HCAS Student Capstones, Theses, and Dissertations

The absorption of atmospheric carbon dioxide (CO₂) by ocean surface water is causing ocean acidification (OA), a process by which the reaction between water and CO₂ changes ocean carbonate chemistry. Predictions of OA trajectories modeled by the Intergovernmental Panel on Climate Change (IPCC) are based on open ocean trends and may not accurately predict changes to variable nearshore ecosystems. The dynamic nature of nearshore ocean chemistry, and prevalence of OA vulnerable species within these ecosystems complicates the process of making accurate OA impact predictions within the coastal zone. Florida’s coral reef is a nearshore ecosystem vulnerable to …

Abundance, Site-Fidelity, And Association Patterns Of Coastal Bottlenose Dolphins (Tursiops Truncatus) Off Southeast Florida, Graysen D. Boehning

All HCAS Student Capstones, Theses, and Dissertations

The coastal bottlenose dolphin is well studied throughout its natural range, however, most of the study areas comprised wide, well-protected habitats such as bays and estuaries, and not narrow coastal sandbanks. This study identifies a residential group of coastal bottlenose dolphins utilizing the narrow sandbanks within the Northwestern Atlantic waters off the coast of Palm Beach County, Florida, USA. From 2014-2020, 313 boat surveys were conducted, and 585 individual dolphins were identified using photo-ID. Twenty-four animals were determined to be full-time and 66 animals were determined to be part-time residents. Full-time and part-time residents associated in three social tribes, with …

Evaluation Of Monthly And Seasonal Grazing Rates Of Ilyanassa Obsoleta On Benthic Microalgae In The North Inlet Estuary, Brittany Dearmitt

Theses and Dissertations

The eastern mud snail, Ilyanassa obsoleta, is found at densities of 100’s of individuals m^-2 on soft sediments in the intertidal zones of estuaries. These obligate deposit feeders consume microalgae, detritus, larvae, meiofauna, and macrofauna in the surface layers of sediments with possible trophic impacts on benthic microalgal (BMA) biomass. The goals of this study were to quantify mud snail grazing on BMA biomass, observe the variation in monthly and seasonal grazing rates, and evaluate the relationship between atmospheric temperatures and grazing rates. The sites for this experiment were two mudflats in Oyster Landing, North Inlet estuary, South …

Polychlorinated Organic Contaminants In Baleen From North Pacific Ocean Whales, Briana R. Coulter

All HCAS Student Capstones, Theses, and Dissertations

Persistent organic pollutants (POP) have been detected and analyzed in various baleen whale tissues (blubber, muscles, liver, etc.) This study concentrated on detecting 7 polychlorinated biphenyls (PCB) and 14 organochlorine pesticides from baleen, a baleen whale tissue never before analyzed for POPs. These data were used to investigate temporal and geographic trends by sampling at every 1 cm interval along the length of the baleen plate. Four species of baleen whales stranded in the North Pacific Ocean were included in this study: gray (n=2), humpback (n=2), minke (n=1), and blue (n=1) whales. Organic contaminant concentrations were analyzed with respect to …

Validation Of Pilot Protocol: Damage Scoring Of Puget Sound Mollusk Shells, Lauren Doffing

Environmental Science Undergraduate Theses

The Marine Sediment Monitoring Team at the Washington State Department of Ecology observed damage to mollusk shells while studying the benthic communities of Puget Sound. A pilot protocol was written to allow researchers to quantify the damage. Two researchers independently followed the protocol, including reference photos, for a set of samples collected in 2019 from an urban bay, East Possession Sound. Two scores were given to each specimen: highest-level damage and extent of highest-level damage. An additional score was given to bivalve species: rust/stain. The sets of scores were compared to determine if the protocol yielded similar values between the …

Characterizing Endogenous Dicer Products To Unravel Novel Rnai Biogenesis Pathways, Jacob Oche Peter

Dissertations

ABSTRACT

RNA interference (RNAi) is a pervasive gene regulatory mechanism in eukaryotes based on the action of multiple classes of small RNA (sRNA). Exploiting RNAi pathways in non-model systems have great potential for creating potent RNAi technologies. Here, we accessed RNAi-mediated control of gene expression in the two-spotted spider mite, Tetranychus urticae (T. urticae) using engineered dsRNA designed to modulate the host RNAi pathway and increase RNAi efficacy. Analysis of Dicer (Dcr) generated fragments revealed how exogenous RNAs access the host RNAi pathway in this animal, opening avenues for designing RNAi technology for their control. Further, some organisms …

Biomass Estimation Of Marine Biofilms On Plastic Surfaces, Kian Banihashemi, Fernando Javier Gil

Biological Sciences

Plastics have become a major source of marine pollution, which threatens food safety and quality, human health, and marine ecosystems. Due to the drastic negative effects of plastics in a marine environment, alternative biodegradable plastics are being generated that are more eco-friendly and have less environmental impact. Though some of these plastics are known to biodegrade, the process of degradation for bioplastics has not been heavily studied in a marine environment. This pilot project sought to both quantify the process of biodegradation and compare across different methods for effectiveness of biomass estimation, which serves as an indicator of biodegradation. Plastics …

Developing A Miniature Smart Boat For Marine Research, Michael Isaac Eirinberg

Computer Engineering

This project examines the development of a smart boat which could serve as a possible marine research apparatus. The smart boat consists of a miniature vessel containing a low-cost microcontroller to live stream a camera feed, GPS telemetry, and compass data through its own WiFi access point. The smart boat also has the potential for autonomous navigation. My project captivated the interest of several members of California Polytechnic State University, San Luis Obispo’s (Cal Poly SLO) Marine Science Department faculty, who proposed a variety of fascinating and valuable smart boat applications.

A Review Of Current Sea Cucumber And Apostichopus Californicus Knowledge And A Proposal For Future Research And Fishery Management, Lily Haug

University Honors Theses

The sea cucumber species Apostichopus californicus is fished in the Pacific Northwest region of North America and has the potential to be an economically beneficial fisheries species. An understanding of their population levels must be present to sustainably regulate their harvest. Current fisheries in North America vary in their methodology and level of regulation. The current regulations are presented and their strengths and shortfalls are described. This review gathers research done on tropical sea cucumber species and presents that knowledge alongside that regarding Apostichopus californicus to suggest future research and fishery management strategies. A. californicus takes four years to sexually …

Distribution Patterns Of The Invasive Mussel Arcuatula Senhousia In Mission Bay, San Diego, California: Effects Of Sediment Grain Size And Byssus Thread Production On Predation, Samantha Ahlman

Theses

The ability of bivalves to avoid predation by using defensive behaviors such as burrowing and byssus production may vary depending on the sediment characteristics of a given habitat. The varying sediment characteristics that change with water velocity within estuaries may influence the distribution of bivalves and limit them to areas that optimize their ability to defend against predators. We examined the distribution patterns of the invasive Asian date mussel Arcuatula senhousia relative to the sediment grain size distribution in Mission Bay, an urban estuary located in San Diego, California, USA. Mussels and sediment were collected using an Ekman grab at …

An Analysis Of Mesophotic Macroalgal Species Richness And Abundance In Puget Sound, Mathea Kurtz-Shaw

Honors Projects

Mesophotic ecosystems are important, light-dependent communities that act as an area of transition for shallow and deep-water organisms. Macroalgae are prominent members of these communities whose growth is influenced primarily by depth and light levels. Even though they are important community members and habitat-builders in these mesophotic ecosystems, macroalgae are highly understudied, especially in temperate environments. To examine these understudied communities, macroalgal coverage, richness, and light intensity at 3 different depth levels across 4 sites in Puget Sound, USA were compared using videos collected during SCUBA diving. All but three of the transects were within the surface irradiance limits classified …

Impacts Of Nitrogen Enrichment On Corals – A Remote Sensing Approach, David E. Carrasco

Master's Projects and Capstones

Anthropogenic activities have resulted in ever-increasing threats to coral reefs globally, wherein the rate of environmental changes have exceeded the historical capacity of corals to adapt. This has threatened the persistence of coral ecosystems and their associated ecosystem services, which billions of people rely on for their livelihoods. The most prevalent stressor is nitrogen enrichment, which while present naturally, is exacerbated by the anthropogenic input of nutrients via the discharge of agricultural and urban waste waters. The focus is to answer the central research question of how nitrogen enrichment impacts corals, and how it interacts with other stressors with particular …

Impacts Of Human Development And Salt Marsh Characteristics On Variation In The Growth And Reproduction Of Spartina Alterniflora, Alora Lovely

Honors Theses

This study focused on how human development may impact salt marshes using the common native species Spartina alterniflora as an indicator. Salt marshes are vital coastal ecosystems that help protect against major flooding and can filter pollutants from the water. Like many environments, salt marshes have been impacted by human development in many ways, from construction of cities and roadways to pollution from industrial facilities and equipment. The salt marshes that once dominated many coastlines along the North American Atlantic coast have been destroyed or reduced in size dramatically with the extensive development that has occurred along these shores. Three …

Effects Of Exercise On Fear Behavior In Zebrafish, Tyler Kuni

Undergraduate Theses and Capstone Projects

The experiment focuses on the behaviors of zebrafish when they are exposed to an environment that causes anxiety or fear behavior and how controlled amounts of exercise will affect the behaviors of the fish. Fearful behavior was measured by the activity level and area of the swimming during the fear conditioning process. We investigated whether the changes in activity level, areas of swimming in the tank, and depth of swimming in the tank were significant as well as if there was an interaction effect between the fear conditioning and our dependent variables. Zebrafish were randomly assigned to three groups: the …

Induced Spawning Of Captive Tripletail Lobotes Surinamensis, Nicholas Adams

Master's Theses

The Tripletail, Lobotes surinamensis, is an emerging candidate species for U.S. marine aquaculture. This work aimed to address two bottlenecks for hatchery production of the species by developing a hormonal induction protocol to obtain fertile spawns from captive brooders and a method for sex identification of candidate brooders.

Single pairs selected among a captive-held broodstock conditioned under a natural photothermal cycle were induced with one of five treatments (n = 5 or 6 replicates per treatment). Control (no hormone) and hCG (1,100 IU.kg^-1 for females, 550 IU.kg^-1 for males) pairs did not spawn. Pairs treated with GnRHa …

Toxicological Assessment Of Zinc Oxide And Titanium Dioxide On Staghorn Coral, Acropora Cervicornis, Katherine E. Meurer

All HCAS Student Capstones, Theses, and Dissertations

Coral reefs are one of the most diverse and biologically significant ecosystems on the planet. However, anthropogenic impacts have led to a global decline in overall reef health in recent years. To address concerns that organic ultraviolet filters in sunscreen may contribute to reduced coral health, the mineral UV filters, zinc oxide (ZnO) and titanium dioxide (TiO₂), have become more common in sunscreen formulas as they are often considered “reef safe” despite limited information on the toxicological effects of these compounds in corals. This study evaluated the effects of exposure to unmodified forms of zinc oxide or titanium …

An Analysis Of Suspended Microplastics In Sewage Outfalls, Inlets, And Coastal Waters Of Broward County, Florida, Katrina A. Smith

All HCAS Student Capstones, Theses, and Dissertations

The widespread use of plastics has led to a surplus of plastic waste in landfills and the ocean. The degradation of these plastics produces microplastics, which are detrimental to the environment. Microplastics can be introduced into the ocean in several ways, including runoff and sewage outfalls; both pathways can concentrate microplastics and promote adsorption of environmental contaminants to the plastic's surface. South Florida has six sewage outfalls, and nine inlets, whose proximity to the Florida Reef Tract increases the potential exposure of microplastics to sensitive environments, such as the coral reef. A quantitative assessment of microplastics introduced into the ocean …

Age, Growth, Foraging, And Trophic Ecology Of Bigeye (Thunnus Obesus) And Yellowfin (Thunnus Albacares) Tuna In Continental Shelf And Slope Regions Of The Northeast U.S., Riley S. Austin

Electronic Theses and Dissertations

Traditional stock assessments require, in part, accurate knowledge of growth relationships to estimate a variety of aspects involved in population conservation management of exploited species. In addition, the local distribution and condition of top pelagic predators is driven by detection of abundant forage aggregations and along with traditional stock assessments, should be considered for effective management of marine populations. Empirical analyses of these data are severely lacking for bigeye (Thunnus obesus) and yellowfin (Thunnus albacares) tuna in the Atlantic Ocean, especially for the former. Given historical studies’ observations of these two top predators use as biological samplers due to their …

Evaluating Methods To Determine The Maximum Oxygen Consumption By The Gulf Killifish, Fundulus Grandis, Sylvia Mullen

Senior Honors Theses

Metabolic rate is an essential feature of animal physiology and ecology. The rate of aerobic metabolism, as determined by oxygen consumption rate (MO2), is influenced by a variety of factors, including body size, temperature, and activity levels. Maximum aerobic metabolic rate (MMR) reflects the physiological capacity of an animal for oxygen extraction and utilization. As such, MMR is argued to be an important feature of an animal’s life history. For fish, MMR is frequently estimated as the peak MO2 immediately following an exhaustive chase, although several studies indicate that this value may underestimate MMR. Rather, MMR may be attained during …

Repeated Boat Noise Exposure Damages Inner Ear Sensory Hair Cells And Decreases Hearing Sensitivity In Atlantic Croaker (Micropogonias Undulatus), Gina A. Badlowski

University of New Orleans Theses and Dissertations

No abstract provided.

Climate-Driven Stock Shifts And Expansions In The U.S. Northeast Shelf: Identifying Challenges, Opportunities, And Barriers Through Fishermen And Manager Perspectives, Sophie A. Swetz

All Theses And Dissertations

Climate-driven warming in the U.S. Northeast Shelf (NES) has led to changes in the spatial distributions of many marine resources. Shifts and expansions of commercially important fish stocks pose major challenges to fishermen and fisheries managers in this region. American lobster (Homarus americanus) in the Gulf of Maine (GOM) is one of these impacted stocks and is projected to continue its shift towards more northern and offshore areas. Continued ocean warming could potentially reduce the GOM lobster stock by up to 60% over the next several decades. Given Maine’s reliance on its lobster fishery—which contributes over 80% of …

Possible Surf And Turf Mutualism: The Potential Of Yeast Grown From Maine Wood As Feed For Atlantic Salmon, Gina Scott

All Theses And Dissertations

With fed aquaculture expanding, challenges are being faced with increasing demands for protein for feed. Fishmeal as a protein is at high cost and low supply, and meals from terrestrial agriculture can impact fish health; both also generate environmental challenges. One potential alternative protein is yeast, which can be grown using waste softwood. Simultaneously, Maine forestry has lost buyers of waste wood with several paper mill closures. If yeast is produced as an alternative protein for fish feed using this wood, both Maine Atlantic salmon farming, Maine’s most valuable form of aquaculture, and Maine forestry could benefit. Environmental impact and …

Characterizing Gray Snapper (Lutjanus Griseus) Life History In The Northcentral Gulf Of Mexico: Age And Growth, Mortality, And Reproduction, Edward Kim

<strong> Theses and Dissertations </strong>

Gray Snapper (Lutjanus griseus) constitute a significant recreational fishery and minor commercial fishery throughout the Gulf of Mexico, and review of the recent assessment determined that the stock is overfished and has been undergoing overfishing. The absence of regional baseline data in the northcentral Gulf of Mexico, combined with projections of range expansion and subsequent population growth due to climatic warming, highlight the need for the present investigation into the age and growth, mortality, and reproduction of this species in Alabama and Mississippi. Sex-specific growth curves constructed using the von Bertalanffy growth function demonstrated a significantly greater mean asymptotic length …

Effects Of Tributyltin Exposure On 8-Ohdg And Dsdna Expressions, Oxidative And Nitrative Stress In The American Oyster, Crassostrea Virginica, Mohan Kumar Dash

Theses and Dissertations

Environmental pollution increases due to anthropogenic activities. Different types of pollutants and/or chemicals impair growth, reproduction and development in aquatic organisms. Tributyltin (TBT, an organotin compound) is a tremendously toxic substance which widely uses as antifouling paints used in boats, hulls, and ships. The toxic effect of TBT is well documented in teleost species. The American oyster (Crassostrea virginica) is an ideal shellfish species to study on TBT exposure DNA lesion and oxidative/nitrative stress. In this study, the effects of TBT on 8’-hyrodxy-2’-deoxyguanosine (8-OHdG, a molecular marker), dsDNA, dinitrophenyl protein …