Terrestrial and Aquatic Ecology Commons^™

A Review Of Undrowned: Black Feminist Lessons From Marine Mammals, Nadia G. Dresscher-Lambertus

Feminist Pedagogy

No abstract provided.

Lichens Of Ultramafic Rocks: A Multidisciplinary Approach To Understanding The Ecology Of An Understudied Organism In A Well-Studied System, Michael Mulroy

Master's Theses

Lichens are among the most prominent and successful life forms of metal-rich habitats, including ultramafic rocks and soils; however, research on lichens of ultramafic habitats is limited, especially on the North American continent. A review of the published literature on lichens of ultramafic substrates in North America yielded a total of 437 lichen species reported from ultramafic rocks and soils. Lichen assemblages of ultramafic substrates vary in composition and are dominated by acidophytic (low pH preferring) taxa with a minor, but consistent, basiphytic (high pH preferring) component. Species lists from ultramafic habitats in different geographic regions varied widely, suggesting that …

Distribution And Ecological Function Of Pacific Lamprey In The San Luis Obispo Creek Watershed, Parker Kalan

Master's Theses

Pacific lamprey (Entosphenus tridentatus) is an endemic species to coastal watersheds along the Pacific Rim in North America and Asia. The species' geographic distribution is retracting and has not been mapped precisely, and the ability for the species to provide ecosystem services, such as water filtration, for supporting watershed management has not been tested. The San Luis Obispo Creek watershed, California, USA is at the southern end of Pacific lamprey’s retracting distribution, and the San Luis Obispo watershed is impacted by degraded water quality, making investigation of Pacific lamprey in the San Luis Obispo Creek watershed of direct …

Analysis Of The Slo Bay Microbiome From A Network Perspective, Lien Viet Nguyen

Master's Theses

Microorganisms are key players in the ecosystem functioning. In this thesis, we developed a framework to preprocess raw microbiome data, build a correlation network, and analyze co-occurrence patterns between microbes. We then applied this framework to a marine microbiome dataset. The dataset used in this study comes from a year-long time-series to characterize the microbial communities in our coastal waters off the Cal Poly Pier. In analyzing this dataset, we were able to observe and confirm previously discovered patterns of interactions and generate hypotheses about new patterns. The analysis of co-occurrences between prokaryotic and eukaryotic taxa is relatively novel and …

Comparative Thermal Ecology Of Coastal And Inland Pacific Rattlesnakes (Crotalus Oreganus), Hayley Layne Crowell

Master's Theses

Global biodiversity is declining as a direct result of anthropogenic climate change. Ectothermic species have become focal organisms for studying the ecological effects of altered climates due to the clear relationship between environmental temperatures and ectotherms’ basic physiological functions. Historically, examinations of these effects have focused heavily on heliothermic lizards, and most others have tended to focus on single populations or sympatric species within a single community. Addressing the longterm energetic implications of environmental temperature variation will provide valuable insight into the cascading physiological effects that certain populations or species may experience as a result of altered climates.

In this …

Comparing Orientation Behavior And Prey Preference Of Leptasterias Spp. Between Microhabitats, Jenna C. Sanders, Margaret W. Johnson, C Sarah Cohen

STAR Program Research Presentations

Leptasterias spp. is a species complex of small, six rayed, predatory sea stars that inhabit rocky intertidal communities along the Pacific coast of North America. A developmental mode of brooding their young, rather than broadcasting for planktonic development, limits dispersal away from the natal area, and may also result in fine scale local adaptation of populations. Local adaptation may lead to morphological and behavioral differences among populations, specifically towards the most available prey. Within the rocky intertidalthere are zones of high and low wave impact which create microhabitats with their own selective forces. In areas of high wave impact, stars …

Crossing Corridors: Wildlife Use Of Jumpouts And Undercrossings Along A Highway With Wildlife Exclusion Fencing, Alex J. Jensen

Master's Theses

Roads pose two central problems for wildlife: wildlife-vehicle collisions (WVCs) and habitat fragmentation. Wildlife exclusion fencing can reduce WVCs but can exacerbate fragmentation. In Chapter 1, I summarize the relevant studies addressing these two problems, with a focus on large mammals in North America. Chapters 2 and 3 summarize field assessments of technologies to reduce WVCs and maintain connectivity, specifically jumpout ramps and underpasses, along Highway 101 near San Luis Obispo, CA. In a fenced highway, some animals inevitably breach the fence and become trapped, which increases the risk of a wildlife-vehicle collision. Earthen escape ramps, or “jumpouts”, can allow …

Influences Of Anthropogenic Noise On Flight Initiation Distance, Foraging Behavior, And Feeder Community Structure Of Wild Birds, Alissa R. Petrelli

Master's Theses

Throughout the world, birds represent the primary type of wildlife that people experience on a daily basis. However, a growing body of evidence suggests that alterations to the acoustic environment can negatively affect birds as well as humans in a variety of ways, and altered acoustics from noise pollution has the potential to influence human interactions with wild birds. In this thesis, I investigated how anthropogenic noise impacts daily behavior as well as community structure of wild birds. In the first component of this thesis, I assessed the distance at which a bird initiates flight or escape behavior (i.e., flight …

The Population Genetics Of Morro Bay Eelgrass (Zostera Marina), Julia Gardner Harencar

Master's Theses

Seagrass populations are in decline worldwide. Zostera marina (eelgrass), one of California’s native seagrasses, is no exception to this trend. In the last 8 years, Morro Bay, California has lost 95% of its eelgrass. Eelgrass is an ecosystem engineer, providing important ecosystem services such as sediment stabilization, nutrient cycling, and nursery habitats for fish. The failure of recent restoration efforts necessitates a better understanding of the causes of eelgrass decline in this estuary. Previous research on eelgrass in California has demonstrated a link between population genetic diversity and eelgrass bed health, ecosystem functioning, and resilience to disturbance and extreme climatic …

An Assessment Of Potential False Positive E.Coli Pyroprints In The Cplop Database, Skyler A. Gordon

Master's Theses

The genetic information found in each species of organism is unique, and can be used as a tool to differentiate at the molecular level. This has caused rapid genotyping methods to become the cornerstone of a new area of research dependent on reading the genome as a form of identification. One of these specific identification methods, known as pyroprinting, relies on the small variation of DNA sequences within the same species to develop a unique, reproducible fingerprint. By simultaneously pyrosequencing multiple polymorphic loci within the ribosomal operons known as the intergenic transcribed spacers, a reproducible output is obtained, known as …

Symposium Volume 3, Issue 1

Symposium

Collection of research projects conducted by students of the College of Science and Math at California Polytechnic State University

The Evaluation Of The Response Of American Eels To Rapid Decompression, Christina Macmillan, Alison Colotelo, John Stephenson, Briana Rhode, Trevor Macduff

STAR Program Research Presentations

Hydropower dams are used throughout the world to generate electricity and dams can negatively affect fish, as they can hinder or block migration or be a source of injury and mortality during passage. When moving downstream, fish can pass through the turbines instead of other routes (e.g. spillway and juvenile bypass system)where there is a sudden decrease in pressure that can cause barotraumas, injuries from the changes in barometric pressure, (e.g., hemorrhaging, embolism, ruptured organs) due to internal gases expanding. To determine the response of American eels, Anguilla rostrate, to rapid decompression, testing was conducted in the Mobile Aquatic …

Evaluating The Myth Of Allelopathy In California Blue Gum Plantations, Kristen Marie Nelson

Master's Theses

It is widely accepted that allelopathy is not only significant, but more or less singular, in the inhibition of understory vegetation in California Eucalyptus globulus (blue gum) plantations. However, there is no published documentation of allelopathy by blue gums against California native species. Here, we present evidence that germination and early seedling growth of five California native species are not inhibited by chemical extracts of blue gum foliage, either at naturally-occurring or artificially concentrated levels. In the greenhouse, seeds were germinated in field-collected soil from mature blue gum plantations and the adjacent native, coastal scrub communities. In petri plates, seeds …

Effects Of Supplemental Hydration On Physiology And Behavior Of Northern Pacific Rattlesnakes (Crotalus Oreganus Oreganus), Griffin D. Capehart

Master's Theses

Hydration is a critical element for many physiological processes in vertebrates, such as protein production, innate immunity, and behavioral processes such as daily activity and thermoregulation. Few studies have directly assessed the effect of hydration on these animals in nature. While it seems intuitive that drought is stressful to animals, studies examining drought are typically observational and fail to assess how the hydration state of these animals influences their physiology and behavior. We tested for an effect of hydration on several physiological and behavioral parameters in Northern Pacific rattlesnakes (Crotalus oreganus oreganus) by experimentally manipulating hydration levels in …

Do Marine Protected Areas Affect Emerging Fisheries Population Density?, Jennifer Greene, Katherine O. Grady, Crow White, Danielle Zacherl

STAR Program Research Presentations

Kellet’s whelk, Kelletia kelletii, were observed at sample sites throughout their range from Baja California, Mexico, to Monterey, CA to determine patterns of population density. Sample sites in each region were either located within California marine protected areas where take of the Kellet’s whelk in prohibited, or in non-protected areas where the whelks can be fished both commercially and recreationally. Kellet’s whelk population density was compared between all MPA and non-MPA sample sites. These mean densities were also found for sites in Santa Barbara and San Diego near active fishing ports and compared to data from the same sites collected …

Monitoring Abundance Of Carcinus Maenas Developmental Stages In Seadrift Lagoon, Andrea M. Fieber

STAR Program Research Presentations

Able to tolerate a wide range of habitats, temperatures, and salinities, Carcinus maenas thrives in much of its non-native range, out-competing native crabs for resources while diminishing food supplies for a variety of marine and estuarine organisms. In Seadrift Lagoon, a manmade inlet of Bolinas Lagoon in Marin County, California, green crabs comprise a significant portion of benthic fauna, and trapping efforts began in 2009 to eradicate them. We analyzed several years of trapping data to monitor demographic changes for this closed population, performed larvae and megalopae sampling with pot scrubbers, and counted eggs on ovigerous females captured in Seadrift …

Radiocarbon Isotopic Classification Of Deep Tropical Forest Soils, Brooke Butler, Karis J. Mcfarlane, Jennifer Pett-Ridge, Katherine A. Heckman

STAR Program Research Presentations

Tropical forest soils have an important role in global carbon (C) stocks. Small changes in the cycling of C could drastically affect atmospheric carbon dioxide (CO2) concentrations and active cycling of carbon in a forest community. Currently, little is understood of how tropical forest soils will respond to the increasing global temperatures. To examine the effects of warming/ drought on losses of older versus younger soil C pools, we implemented radiocarbon (14C) isotopic characterization of various soil plot samples and depths from the Luquillo Experimental Forest, Puerto Rico. 14C was measured using Accelerated Mass Spectrometry (AMS) from catalytically condensed carbon …

Winter Freeze Decreases The Emergence Of Fauna And Flora In California Vernal Pools, Korena S. Hendryx, Jamie Kneitel

STAR Program Research Presentations

Impacts of global climate change is observed in many ecological systems. Temporary aquatic ecosystems, including California vernal pools, are especially sensitive to climatic variation, but most species are adapted to the annual fluctuations in precipitation and temperature. Since vernal pools experience an inundation and desiccation every year, species that occupy the ecosystem have adaptations to this cycle. Many species survive drought by creating resting eggs to then re-emerge upon inundation However, climate changes outside the typical range may have deleterious effects on these populations. Moreover, climate variation can have secondary effects on the community. For example, the amount of precipitation …

The Pioneer Of Santa Rosa Island, Andrea Martinez, Michael Perez, Kathryn Mceachern, Sarah Chaney, Ken Niessen

STAR Program Research Presentations

Santa Rosa Island which is part of the Channel Islands in California has a ranching history that goes as far back as the year 1843. While rich in history, the island is no longer “rich” in native plant populations due to the sheep, cattle and other livestock that once occupied the island. As a result of these grazers that the ranchers livelihood depended on, a great disturbance in the native plant population took place. It is up to plants such as Baccharis pilularis, commonly known as Coyote brush, to assist these endangered and threatened plants to once again flourish …

Are Circadian Cycles The Dominant Proteome Rhythym In The Intertidal Mussel Mytilus Californianus?, Kristina M. Koster, Cory Elowe, Lars Tomanek

STAR Program Research Presentations

Mytilus californianus, also known as the California mussel, is a marine bivalve that is abundant along the West coast from Alaska to southern Baja California. They mainly reside in the upper-middle intertidal zone and cling to pier pilings and surf exposed rocks. They create multi-layered beds, which form a habitat for algae and many species of invertebrates. Intertidal mussels live in a naturally dynamic environment. It has previously been reported (Connor and Gracey, 2011) that the 24-hour circadian (day to night) rhythm of the intertidal mussel Mytilus californianus is primarily responsible for its rhythmic gene expression, as opposed to …

Jellyfish Throwdown: Invasive Versus Native, Brooke Bemowski, Trisha Huynh, Lindsay J. Sullivan, Wim Kimmerer

STAR Program Research Presentations

The San Francisco Bay Estuary is home to many species of marine and wildlife that create a delicate ecological balance. Invasive jellyfish introduced to the bay though cargo shipping are believed to be competing with the endangered delta smelt for the same food source of copepods. Samples of zooplankton were taken from high and low salinity zones in the San Francisco Bay over three years in months June through February to correlate with the peak of the jellyfish lifecycle. The preserved samples are looked through and jellyfish are removed and recorded. The species of jellyfish is determined using features such …

Salinity Distribution Of Microplankton In The San Francisco Estuary, Carrie Ann Sharitt, Lindsay Sullivan, Wim Kimmerer

STAR Program Research Presentations

Microplankton are a diverse group of planktonic organisms ranging from 0.02 to 0.2 millimeters. Since the group is defined solely by size, it spans numerous taxonomic groups, including both heterotrophs and autotrophs. Microplankton are abundant in all aquatic ecosystems and are important prey for many organisms, including bivalves, crustaceans, and fish. The San Francisco Bay is truly an estuary as saltwater enters the estuary under the Golden Gate Bridge and freshwater flows in from the Sacramento and San Joaquin Rivers. Thus, there is a gradient of salinity from freshwater (0) in the rivers to saltwater by the Golden Gate Bridge …

The Ecological Effects Of Cattle Grazing On Reptiles And Small Mammals In A San Joaquin Valley Grassland, Michael William Tom

Master's Theses

Livestock grazing is a common and extensive land use practice in the United States occurring in a wide range of habitat types. As such, livestock grazing has the potential to alter ecosystem structure, function and community composition. The primary component (Chapter 1) of this thesis examined the effects of cattle grazing in a San Joaquin Valley grassland on two target taxa: reptiles and small mammals. The study took place on the Chimineas Unit of the Carrizo Ecological Reserve, San Luis Obispo County, California during Fall 2009 and Spring 2010. These taxa were sampled on matched pairs of two grazed and …

Zooplankton Trophic Ecology In The San Francisco Estuary During Summer As Determined By Stable Isotope Analysis, Kyla Bradylong, Steven Westbrook, Julien Moderan, Wim Kimmerer

STAR Program Research Presentations

Declines in the abundance of several pelagic fish species in the upper San Francisco Estuary have prompted investigation into food web interactions within the estuary and delta (the lower Sacramento and San Joaquin Rivers). This area is characterized by low primary production and pelagic food webs much longer and reticulated than previously thought, implying low efficiency in the energy transfers from primary producers to planktivorous fish. We determined the carbon and nitrogen stable isotope (SI) composition of zooplankton samples collected monthly between June 2012 and February 2013 at eight stations along the salinity gradient. As consumers SI composition reflects that …

Jellyfish Identification And Quantification In The San Francisco Estuary, Amalia Borson, Lindsay L. Sullivan, Wim Kimmerer

STAR Program Research Presentations

As potential predators and competitors of plankton-eating fish, jellyfish have the potential to negatively impact fish populations. Jellyfish were collected weekly with plankton tows from the RombergTiburonCenterpier in Tiburon, CA. Since some jellyfish were too small to identify, one tow was collected and preserved to record abundances, and a second tow was collected to rear jellyfish until distinguishing characteristics were visible enough for identification. Jellyfish in the preserved tows were then identified, measured, and counted, and their abundance (number m^-3) was calculated. Jellyfish from the second tows were reared in plastic buckets that were lightly bubbled using aquarium …

Feeding Ecology Of Delta Smelt During A Seasonal Pulse Of Turbidity, William A. Hilton, Aaron Johnson, Wim Kimmerer

STAR Program Research Presentations

The delta smelt (Hypomesus transpacificus) is a small, pelagic fish endemic to the San Francisco Estuary (SFE) and protected under federal and state endangered species acts. This study examines the diet of adult delta smelt during their spawning migration in the winters of 2010 and 2012. Delta smelt and their zooplankton prey were sampled concurrently during a seasonal pulse of turbidity at sites along their migratory route from the low salinity zone in Suisun Bay to the fresher waters of the Sacramento/San Joaquin Delta. Gut contents were identified to the lowest possible taxon and counted, along with zooplankton …

A Multispecies Avian Abundance Analysis In Riparian And Oak Woodland Habitats On The California Central Coast, Jacy Hyde

Biological Sciences

I investigated the abundance and diversity of riparian and oak woodland birds in a section of the Los Padres National Forest in Coastal Central California. Point counts were conducted in Oak Woodland and Riparian habitats during the summer of 2012. Point counts were replicated in time (2x) and space (25 replicates). The data were analyzed using Program Distance to correct for differing detection probabilities between species and habitat types. The two habitat types showed no significant difference in species richness. For most species, there was no difference in density between riparian and oak woodland habitats. However, the two species with …

The Spatial Games: Investigating The Spatial Distribution Of Anax And Select Prey As A Function Of Predator-Prey Interactions, Shane Elizabeth Johnson, Nene Kumashe Ugbah

Biological Sciences

Our study investigated the spatial distribution and movement behavior of predatory dragonfly larvae (Anax) and of two prey types: mosquito larvae and amphipods. Predator-prey interactions have important consequences for the population dynamics of both predator and prey groups and these interactions can shape community structure. We measured behavior of each prey type in the presence of the Anax predator and the behavior of the predator in the presence of these alternative prey types. Observations were made in five-gallon aquaria where a grid pattern allowed us to track the number of moves made by individuals. We compiled data from …

Seasonal Food Habits Of Burrowing Owls (Athene Cunicularia) In Human-Altered Landscapes, Carie Marie Wingert

Master's Theses

In 2004, I initiated a year-long study to investigate the food habits of burrowing owls (Athene cunicularia). Burrowing owls have been found in a variety of human-altered landscapes; however, little is known about burrowing owl food habits in urban landscapes. Burrowing owl food habits during the non-breeding season are also largely undocumented, despite increasing concern over the survival of overwintering burrowing owls. Differences in prey consumption between reproductive and non-reproductive owls during the breeding season have not yet been examined. I collected pellets over a 12 month period at four study sites affected by different levels of human …

American Pika (Ochotona Princeps): Persistence And Activity Patterns In A Changing Climate, Cody P. Massing

Master's Theses

An increasing amount of evidence suggests that as temperatures increase, montane animals are moving upward in elevation (IPCC 2007, Parmesan and Yohe 2003). As suitable habitats rise in elevation and then disappear altogether, these animals could be pushed to extinction. The American pika, Ochotona princeps, is a montane mammal that lives in western North America, usually at elevations above 1500 m (Smith and Weston 1990). Recent evidence suggests that pika population numbers are dropping in response to rising temperatures (Beever et al. 2010). The pika is a small herbivorous lagomorph, a relative of hares and rabbits. Its habitat is …