Other Ecology and Evolutionary Biology Commons^™

Variation In Personality Among Semi-Wild Myanmar Timber Elephants, Sateesh Venkatesh

Theses and Dissertations

This study examines two personality traits: exploration and neophobia, which could influence human-elephant conflicts. Thirty-one semi-wild elephants were tested over two trials using a custom novel puzzle tube containing three tasks and three rewards. Our studies show that elephants do vary significantly between individuals in both exploration and neophobia.

Exploration Of The Association Between Muscle Volume And Bone Geometry Reveals Surprising Relationship At The Genetic Level, Prakrit Subba

Masters Theses

The evolution of jaws in cichlid fishes of the East African Great Lakes is a textbook example of adaptive radiation in vertebrates. Karl Liem postulated that this adaptive radiation has been possible due to the functional decoupling of two cichlid functional units – the pharyngeal jaw (PJ) and the oral jaw (OJ). This functional decoupling of the jaws has enabled the OJ to be relieved of its dual role of prey capturing and processing and has allowed the PJ to take on the role of prey processing. As a result, African cichlids have adapted the morphology of their functional units …

Habitat Associations Of Priority Bird Species And Conservation Value On Small, Diversified Farms In New England, Isabel Brofsky

Masters Theses

In recent decades, New England agriculture has become increasingly characterized by small, diversified farming operations with values deeply rooted in community and conservation. In sharp contrast to large-scale, high-intensity agriculture currently typified by the majority of North American farms, New England farmers commonly prioritize ecologically beneficial production practices such as reduced chemical inputs, integrated pest management (IPM), low tillage, cover cropping and crop rotation, and retention of natural habitats like woody hedgerows and herbaceous strips. Public support and demand for local, sustainable food, evidenced by the success of CSA (Community Supported Agriculture) in the region, has helped to bolster this …

Improving Understanding Of Forest Communities And Biodiversity With Multi-Dimensional Landscape Gradients, Ben J. Padilla

Doctoral Dissertations

This dissertation was motivated by a desire to understand the effects of habitat degradation and urbanization on a single species in a single study system in western Massachusetts, the red-backed salamander (Plethodon cinereus), but along the way unexpected conceptual and methodological hurdles caused the work to grow into a multi-species, multi-region, and multi-scale endeavor. As I designed my dissertation research and began considering approaches to quantifying heterogeneity and human influence in my study landscape, I recognized inconsistencies in methods used to define and quantify landscape metrics, particularly in urban systems. To investigate further, I conducted a critical review …

Microsite Requirements For Successful Regeneration In Lowland Northern White-Cedar (Thuja Occidentalis) Forests, Jeanette Allogio

Electronic Theses and Dissertations

Declines in stands of northern white-cedar (Thuja occidentalis L., hereafter cedar) have been observed as both shifts in species composition and reductions in cedar densities, particularly those stands in lowland sites (Curtis 1946, Boulfroy 2012). While several factors inhibiting cedar regeneration have been identified, a thorough understanding of the conditions that best promote regeneration is lacking. Our objectives for the first chapter were to characterize the site conditions associated with successful regeneration in lowland cedar stands and to describe how spatial patterns of various cedar size classes relate to site preference and to regeneration dynamics. These objectives were achieved …

Monarch Butterfly (Danaus Plexippus) Roost Site-Selection And Viability East Of The Appalachian Mountains, Brandon Boxler

Electronic Theses and Dissertations

The Monarch butterfly is a flagship species and pollinator whose populations have declined by approximately 85% in the last two decades. Their largest population overwinters in Mexico, then disperses across the eastern United States and Canada during April to August. Between September-December, the butterflies return south using two migratory flyways, one spanning the central United States and another following the Atlantic coast. They fly during the day and at night roost in large groups. Roosting habitat is essential to the continuation of the Monarchs’ migration, however, threats such as anthropogenic habitat disturbance and climate change potentially endanger sustainability of these …

Characterizing Patterns In Texas Gulf Coast Beach Dune Plant Species Composition, Cody Foster

Electronic Theses and Dissertations

Regional vegetation patterns of Texas beach plant communities were analyzed using cluster analysis, ANOSIM, SIMPER, NMDS, and ISA for fives zones representing the foredune complex of twenty Gulf Coast beaches. ANOVA revealed that zones differ in terms of percent bare sand, percent vegetative cover, and species richness. Cluster Analysis, ANOSIM, and SIMPER results indicate that Texas beaches can be divided into northern and southern regions based on differences in species composition of plant communities. Indicator Species Analysis (ISA) indicates that northern beaches are characterized by the presence of Rayjacksonia phyllocephala, Ambrosia Strophostyles, Ambrosia psilostachya, and Panicum amarum …

A Comparative Genomics Exploration Of Inter-Partner Metabolic Signaling In The Coral-Algal Symbiosis, Katherine E. Dougan

FIU Electronic Theses and Dissertations

At the foundation of coral reef ecosystems is the symbiosis between the coral host and its microbial community, particularly its photoautotrophic algae from the family Symbiodiniaceae. As a symbiosis centered around nutritional exchange, determining the mechanisms involved in the maintenance of this cooperative exchange is central to understanding how it breaks down. As the nutritional transfer primarily consists of sugars, this work first focuses on the cnidarian insulin signaling pathway, an evolutionarily important metazoan pathway involved in diverse functions, most notably metabolism. This dissertation unveiled 360 putative cnidarian insulin-like peptides (cnILPs) from existing transcriptomic datasets, where they were previously missed …

Costs Of Protected Areas In The United States, Diane Le Bouille

Doctoral Dissertations

Protected areas, or land owned in fee by agencies and non-profits to further conservation goals, have traditionally been the go-to choice for conservation interests. The UN Environment World Conservation Monitoring Centre estimates that, currently, close to 15% of all terrestrial and inland water areas are protected. This figure falls short of the Aichi Biodiversity Target of 17% in 2020, that was added to the Convention on Biological Diversity by its 196 signatories in 2010. But as the Convention prepares to set new post-2020 targets, this percentage is expected to keep increasing. Although acquiring a parcel of land is only one …

Prevalence Of Rats And Rodent Borne Pathogens Across Post-Katrina New Orleans, Bruno Marco Ghersi

Doctoral Dissertations

Disasters are happening at an increasingly higher rate and intensity a trend that is expected to continue as more humans migrate to coastal urban areas. Disasters, and as importantly, disaster recovery can affect how native and pest populations will recover. My aim was to improve understanding of disease risk by evaluating the socioecological conditions that have shaped commensal rat recovery and distribution, as well as the pathogens they carry, across New Orleans after Hurricane Katrina. I first estimated relative abundance and distribution of commensal rats from rodent trapping conducted between mid-2014 and early-2017 across 96 sites in 10 areas of …

Root Stage Distributions And Their Importance In Plant-Soil Feedback Models, Tyler Poppenwimer

Doctoral Dissertations

Roots are fundamental to PSFs, being a key mediator of these feedbacks by interacting with and affecting the soil environment and soil microbial communities. However, most PSF models aggregate roots into a homogeneous component or only implicitly simulate roots via functions. Roots are not homogeneous and root traits (nutrient and water uptake, turnover rate, respiration rate, mycorrhizal colonization, etc.) vary with age, branch order, and diameter. Trait differences among a plant’s roots lead to variation in root function and roots can be disaggregated according to their function. The impact on plant growth and resource cycling of changes in the distribution …

A High Resolution Study Of Long-Term Vertebrate Decomposition In Human And Animal Model Systems, Lois S. Taylor

Doctoral Dissertations

The effects of vertebrate decomposition are wide-ranging across multiple foodwebs, and have been shown to persist in the environment, however there is a lack of systematic assessment of these changes over long periods of time or in sufficiently high resolution as to resolve seasonal flux patterns. The ultimate aim of this body of research was to explore nematode systematics in decomposition environments, culminating in a pair of long-term human decomposition seasonal trials, in high resolution, with the specific intent of integrating the fields of soil chemistry, microbial ecology, and nematology in order to assess the relationships of cross-disciplinary impacts. Of …

An Examination Of The Influence Of Multi-Scale Processes And Connectivity On The Population And Assemblage Dynamics Of Headwater Fishes, Josh P. Hubbell

Dissertations

Typified by their branching pattern, headwaters are numerically abundant as the density of these habitats increases with increasing distance from the base of a dendritic river system. Connectivity among headwaters is complex, resulting in the spatial isolation of populations. Headwater specialists have evolved a suite of traits that permit these species to permanently reside within these habitats. The spatial configuration and connectivity of headwaters has repercussions for metapopulations and meta-assemblages. I investigated how multi-scale processes and connectivity influenced the patch occupancy, coexistence, movement ecology, population structure, and gene flow of headwater specialists. In chapter two, I used occupancy modeling to …

Influences Of Forest Edges On The Growth And Health Of Old-Growth Coast Redwood Forests, Cody R. Dangerfield

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Coast redwood (Sequoia sempervirens) is the tallest species in the world, frequently attaining heights greater than 300 ft. The unique characteristics of the redwoods has led to the establishment of several preservation areas including national and state parks. However, abrupt forests edges created by previous logging and landcover changes has left the remaining stands exposed to elevated temperature, sunlight, and wind intensities, thereby making redwoods along the forest edge more susceptible to windthrow and drought stress. Despite the rarity of old-growth coast redwood forests and their ecological and cultural significance, very few studies have investigated how forests edges …

Introduction To Neutrosophic Genetics, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

Neutrosophic Genetics is the study of genetics using neutrosophic logic, set, probability, statistics, measure and other neutrosophic tools and procedures. In this paper, based on the Neutrosophic Theory of Evolution (that includes degrees of Evolution, Neutrality (or Indeterminacy), and Involution) – as extension of Darwin’s Theory of Evolution, we show the applicability of neutrosophy in genetics, and we present within the frame of neutrosophic genetics the following concepts: neutrosophic mutation, neutrosophic speciation, and neutrosophic coevolution.

Population Structure Of A Federally Endangered Plant (Astragalus Jaegerianus Munz, Fabaceae) With Limited Range Using Microsatellites, Sueann Neal

Electronic Theses, Projects, and Dissertations

Studies on population genetics examine the relationship and effects of population structure, migration, gene flow and demographic history, and are therefore important in the conservation of endangered species. Astragalus jaegerianus, a critically federally endangered species found in a geographically restricted range is investigated to determine population structure and genetic variation. Previous research on A. jaegerianus focused on DNA sequence data for cpDNA and nrDNA showed no variation. Further research on A. jaegerianus utilizing AFLP’s on the whole genome indicated substantial gene diversity and population structure consistent with geographically widespread species. AFLP research is a cost-effective process to identify levels …

Trilepisium (Moraceae): Four New Species From Madagascar, Shawn Kelley

Theses

Trilepisium is a genus of tree with two member species: T. madagascariense and T. gymnandrum. This genus shows diversity in habit and morphology greatly exceeding that expected of a genus with two member species. Concerted collection efforts since the last revision have suggested there are several unrecognized species within Trilepisium and a revision is needed. Chapter one of this thesis details the history of this taxanomically challenging genus and presents the results of our study of 600 Malagasy herbarium specimens. Trilepisium is more adequately circumscribed as containing 17 species, 11 of which are new to science. Chapter two contains …

Stygobitic Crustaceans In An Anchialine Cave With An Archeological Heritage At Vodeni Rat (Island Of Sveti Klement, Hvar, Croatia), Alessandro Montanari, Nicolas Cerveau, Barbara Fiasca, Jean-François Flot, Diana Galassi, Maurizio Mainiero, David Mcgee, Tadeusz Namiotko, Stefano Recanatini, Fabio Stoch

International Journal of Speleology

A group of four amphoras found in the anchialine cave of Vodeni Rat in the Croatian island of Sveti Klement, on a rocky ledge at 24 m water depth, indicates that a freshwater source was exploited at the bottom of this karstic pit by islanders and/or passing-by sailors from the late Roman Republican Period to the Early Medieval Period. In other words, prior to the 4^th–7^th century CE, Vodeni Rat was not an anchialine cave but a Pleistocene karstic pit with a freshwater pool at the bottom. Seawater started to infiltrate this cavity via newly opened fissures …

Spatio-Temporal Dynamics Of Fungal Communities And Their Effects On Plants, Kel Cook

Biology ETDs

Fungi perform several critical functions in the environment. Spatiotemporal distributions of fungal communities will mediate when and where these functions happen and how they vary across the landscape. I first explored tropical tree canopy fungal community variation at small spatial scales and documented near total turnover of fungi across sub-meter distances and among adjacent substrates. The second chapter analyzed fungal turnover over the course of three years, where community stability was driven primarily by abundant fungi. In the third chapter, I tested effects of the environment, including host plant and habitat, on canopy fungal communities and found only small effects, …

Coyotes, Rick Tischaefer

Wildlife Damage Management Technical Series

The coyote (Canis latrans; Figure 1) is a medium-sized member of the canid family. Once primarily found in western deserts and grasslands, coyotes have expanded their range across North America and into diverse habitats, including urban areas. This expansion occurred during a time of extensive habitat change and efforts by people to suppress coyote populations to prevent damage. Coyotes can cause a variety of conflicts related to agriculture, natural resources, property, and human health and safety. This document highlights a variety of methods for reducing those conflicts. Coyotes are a highly adaptable species and may become habituated to some management …

Distribution Of Crickets (Subfamily: Phalangopsinae) In Caves Of Baratang Island, Andaman And Nicobar Islands, India, Amruta Dhamorikar, Dhanusha Kawalkar, Shirish Manchi

International Journal of Speleology

Cave-dwelling organisms share different ecological and evolutionary relationships with caves. Based on these interactions, they are categorized as troglobites, troglophiles, and trogloxenes. In India, caves are meagerly explored, and thus cave study is in its infancy in India. Through the present study, we attempted to understand and model the distribution of crickets (Family Phalangopsidae), a critical group of insects - being the primary consumers in the cave ecosystems. We sampled seven caves using belt transects (N = 184; total area covered = 1294.9 m²) with 1 m width. During the survey, we encountered 818 individual crickets (116.85 ± …

Systematic Studies In Myrtaceae Of The Greater And Lesser Antilles, Jonathan A. Flickinger

FIU Electronic Theses and Dissertations

The Myrtaceae, or myrtle family, are a group of flowering trees and shrubs represented in the Americas by over 2000 species of the predominantly Neotropical tribe Myrteae. Recent progress on the challenging systematics of the group has been achieved through molecular phylogenetics, but few of the almost 500 species endemic to the islands of the Greater and Lesser Antilles in the Caribbean have been included in either phylogenetic or revisionary studies. The purpose of my dissertation is therefore to contribute to the description and phylogenetic classification of Antillean Myrtaceae. The first study describes Eugenia walkerae, a new species of …

Period Estimation And Noise In A Neutrally Stable Stochastic Oscillator, Kevin R. Sanft, Ben F. M. Intoy

Spora: A Journal of Biomathematics

The periods of the orbits for the well-mixed cyclic three-species Lotka-Volterra model far away from the fixed point are studied. For finite system sizes, a discrete stochastic approach is employed and periods are found via wavelet analysis. As the system size is increased, a hierarchy of approximations ranging from Poisson noise to Gaussian noise to deterministic models are utilized. Based on the deterministic equations, a mathematical relationship between a conserved quantity of the model and the period of the population oscillations is found. Exploiting this property we then study the deterministic conserved quantity and period noise in finite size systems.

The Role Of Microhabitats In Structuring Cave Invertebrate Communities In Guatemala, Gabrielle S.M. Pacheco, Marconi Souza Silva, Enio Cano, Rodrigo L. Ferreira

International Journal of Speleology

Several studies have tried to elucidate the main environmental features driving invertebrate community structure in cave environments. They found that many factors influence the community structure, but rarely focused on how substrate types and heterogeneity might shape these communities. Therefore, the objective of this study was to assess which substrate features and whether or not substrate heterogeneity determines the invertebrate community structure (species richness and composition) in a set of limestone caves in Guatemala. We hypothesized that the troglobitic fauna responds differently to habitat structure regarding species richness and composition than non-troglobitic fauna because they are more specialized to live …

Resource Use By American Black Bears In Suburbia: A Landholder Step Selection Approach, Farshid S. Ahrestani, Mark A. Ternent, Matthew J. Lovallo, W. David Walter

Human–Wildlife Interactions

Range expansion of American black bears (Ursus americanus; bear) and residential development have increased the bear presence in suburbia. Suburban landscapes exhibiting patchworks of variable-sized parcels and habitats and owned by landowners with diverse values can create large areas of suitable habitats with limited public access. These landscapes may limit the effectiveness of hunting as a traditional bear population management tool. Managers require better information regarding landowner attitudes about hunting before implementing harvest regulations intended to mitigate conflicts in suburban areas. To address this need, in 2013, we surveyed landowners to identify properties that allowed bear hunting in 3 …

Evidence For Height And Immune Function Trade-Offs Among Preadolescents In A High Pathogen Population, Angela R. Garcia, Aaron Blackwell, Benjamin C. Trumble, Jonathan Stieglitz, Hillard Kaplan, Michael Gurven

ESI Publications

Background

In an energy-limited environment, caloric investments in one characteristic should trade-off with investments in other characteristics. In high pathogen ecologies, biasing energy allocation towards immune function over growth would be predicted, given strong selective pressures against early-life mortality.

Methodology

In the present study, we use flow cytometry to examine trade-offs between adaptive immune function (T cell subsets, B cells), innate immune function (natural killer cells), adaptive to innate ratio and height-for-age z scores (HAZ) among young children (N = 344; aged 2 months–8 years) in the Bolivian Amazon, using maternal BMI and child weight-for-height z scores (WHZ) as …

Dietary Development And Nutritional Ontogeny In Gorilla Beringei : A Multi-Layered, -Omics Approach, Emma C. Cancelliere

Dissertations, Theses, and Capstone Projects

In species who consume folivorous diets, immature individuals must contend with the challenges of extracting nutrients from fibrous foods before dietary adaptations and strategies are fully developed. Additionally, immatures have distinct nutritional needs to support their stage-specific metabolic and biophysiological requirements. To meet these stage-specific needs, while constrained by underdeveloped feeding strategies and digestive capacities, immatures may adopt distinct diets better suited to their specific developmental context. However, where dietary modification is constrained by low dietary diversity or landscape homogeneity, it is unclear how immature individuals compensate through alternative strategies. In turn, little is known about the nutritional and life …

Transgenerational Plasticity Causes Differences In Uv-Tolerance Of Intertidal And Subtidal Populations Of The Purple Sea Urchin, Strongylocentrotus Purpuratus, Yareli Alvarez, Nikki L. Adams

Master's Theses

Planktonic larvae of marine organisms are increasingly being exposed and required to respond to a changing physical environment. Adult sea urchins occupy both intertidal and subtidal waters and broadcast spawn gametes into the water column to contend with variable physical conditions. To answer how populations of invertebrates residing at different depths adequately prepare their offspring to cope with different levels of ultraviolet radiation (UVR), we collected adult purple sea urchins, Strongylocentrotus purpuratus, from four sites (two intertidal and two subtidal (~15 m deep)) on the central coast of CA to compare UV tolerance in offspring. Our measurements of UVA …

Antibacterial Properties Of Common Gap Plants From Monteverde, Costa Rica, Hannah Pletcher

The Journal of Purdue Undergraduate Research

No abstract provided.

Ecology And Evolution, David J. Lohman

Open Educational Resources

Introduction to the basic principles of ecology and evolutionary biology emphasizing quantitative approaches and hypothesis testing. Scientific reasoning, computer literacy, and writing skills are developed in the laboratory.