Other Ecology and Evolutionary Biology Commons^™

Expanding The Conservation Genomics Toolbox: Incorporating Structural Variants To Enhance Genomic Studies For Species Of Conservation Concern, Stephanie J. Galla

Biology Faculty Publications and Presentations

Structural variants (SVs) are large rearrangements (>50 bp) within the genome that impact gene function and the content and structure of chromosomes. As a result, SVs are a significant source of functional genomic variation, that is, variation at genomic regions underpinning phenotype differences, that can have large effects on individual and population fitness. While there are increasing opportunities to investigate functional genomic variation in threatened species via single nucleotide polymorphism (SNP) data sets, SVs remain understudied despite their potential influence on fitness traits of conservation interest. In this future-focused Opinion, we contend that characterizing SVs offers the conservation genomics …

A Record Of Vapour Pressure Deficit Preserved In Wood And Soil Across Biomes, Adrian Broz, Gregory J. Retallack, Toby M. Maxwell, Lucas C.R. Silva

Biology Faculty Publications and Presentations

The drying power of air, or vapour pressure deficit (VPD), is an important measurement of potential plant stress and productivity. Estimates of VPD values of the past are integral for understanding the link between rising modern atmospheric carbon dioxide (pCO₂) and global water balance. A geological record of VPD is needed for paleoclimate studies of past greenhouse spikes which attempt to constrain future climate, but at present there are few quantitative atmospheric moisture proxies that can be applied to fossil material. Here we show that VPD leaves a permanent record in the slope (S) of least-squares …

Learning From Chemical Coping Behaviors Of Wildlife To Discover New Approaches For Pest Management, Britt Pendleton

Boise State University Theses and Dissertations

Pests, such as parasites and pathogens, persist throughout time and space as threats to public health and food security. The need for novel and sustainable approaches to managing these threats are in high demand. The current approach of discovering and developing chemical treatments to manage pests is tedious, not efficient, and often outpaced by traits of resistance in pests. Here, we propose a new approach to discovering new chemical pest management solutions by observing chemical coping behaviors in wildlife. We define a chemical coping behavior as the exploitation of naturally occurring chemicals within a host’s environment to manage pests. Specifically, …

Genetic Analysis Of Invasive Populations Of Ventenata Dubia (Poaceae): An Assessment Of Propagule Pressure And Pattern Of Range Expansion In The Western United States, Inna Pervukhina-Smith

Boise State University Theses and Dissertations

Molecular markers prove to be an invaluable tool in assessing the introduction dynamics, pattern of range expansion, and population genetics of an invasive species. Ventenata dubia (Leers) Coss. (Aveneae; ventenata) is a diploid, primarily self-pollinating, annual grass native to Eurasia and Northern Africa. The grass has a detailed herbarium collection history in the western United States since its discovery in eastern Washington in 1952. Genetic analysis of 51 invasive populations (1636 individuals) of V. dubia, coupled with historical records, suggests moderate propagule pressure from multiple introductions, followed by local or regional range expansion. Enzyme electrophoresis detected nine multilocus genotypes …

Methodological Advances For Understanding Social Connectivity And Environmental Implications In Multi-Use Landscapes, Matthew Clark

Boise State University Theses and Dissertations

Integrated social-ecological systems research is challenging; complicated feedback and interactions across scales in multi-use landscapes are difficult to decouple. Novel methods and innovative data sources are needed to advance social-ecological systems research. In this thesis, we use network science as a means of explicitly assessing feedback between social and ecological systems, and internet search data to better predict visitation in protected areas. This thesis seeks to provide empirical examples of emerging social-ecological systems science methods as a precedent for resource managers on-the-ground, as well as extending the line of scientific inquiry on the subject

In the first chapter of this …

Ecosystem Services Provided By Soundscapes Link People And Wildlife, Mitchell Jerome Levenhagen

Boise State University Theses and Dissertations

Protected natural areas are not free from noise exposure, both external to and within park boundaries. Natural soundscapes are important in animal life histories, provide positive visitor experiences, and may increase motivation to protect natural areas. To examine the potential coupling of natural and human systems via the soundscape and the use of signs as an effective anthropogenic noise mitigation strategy, we experimentally introduced educational and enforcement signage along a trail and road system in an alternating, weeklong block design within Muir Woods National Monument, CA and Grand Teton National Park, WY, respectively. In Grand Teton National Park, speed limits …

Gyrfalcon Diet During The Brood Rearing Period On The Seward Peninsula, Alaska, In The Context Of A Changing World, Bryce W. Robinson

Boise State University Theses and Dissertations

As climate change impacts increase so does our need to understand their effects on ecosystem dynamics. I studied Gyrfalcon (Falco rusticolus) diet during the brood rearing period to improve our knowledge on dietary habits during nesting, and provide necessary information for understanding climate change impacts to Arctic ecosystems. I studied diet over two breeding seasons on the Seward Peninsula, Alaska, using two methods: motion-activated cameras and the collection of prey remains. I observed three important dietary shifts: the proportion of ptarmigan in the diet declined significantly throughout the season, the proportion of large prey items declined significantly throughout …

Genetic Analysis Of Eurasian Populations Of Taeniatherum Caput-Medusae Subspecies Asperum: Biogeography Of An Invasive, Self-Pollinating, Annual Grass In Its Native Range, Peter Guerdan

Boise State University Theses and Dissertations

Understanding species’ distributions provides a comprehensive biogeographical framework with which to evaluate theoretical and applied ecological and evolutionary questions. To date, few studies have used amplified fragment length polymorphisms (AFLPs) to assess the biogeographical patterns of a broadly distributed grass species, and none that I have found used AFLPs to specifically study biogeographical patterns of an invasive annual grass in its native range. The overall objective of my study was to assess the biogeographic pattern of the invasive, self-pollinating, annual grass Taeniatherum caput-medusae subspecies asperum (medusahead) in its native range in Eurasia using AFLPs. Seventy populations of medusahead from 13 …

Plant Toxins Influence Diet Selection And Intestinal Parasites In A Specialist Herbivore, Marcella Rene Fremgen

Boise State University Theses and Dissertations

Herbivores select plants and patches that generally maximize nutrient intake and minimize intake of plant secondary metabolites (PSMs). Protein is important for growth, reproduction and maintenance, but maximizing intake of protein is often limited by concentrations of PSMs that are potentially toxic to herbivores and energetically expensive to process. However, the consequences of ingesting PSM are often dose-dependent. At high doses, PSMs generally have negative physiological effects and are avoided, but some PSMs can be therapeutic against parasites at low doses and could therefore be selected. We used Greater Sage-grouse (Centrocercus urophasianus, hereafter, sage-grouse) to test how PSMs influence …

Speciation In Western North America: Lomatium As An Example Of Diversification And Convergent Evolution, Edgar M. Sosa, Lauren Polito, Mckayla Stevens, Donald H. Mansfield, James F. Smith (Mentor)

Idaho Conference on Undergraduate Research

Species delimitations and understanding the processes that drive speciation are essential to nearly all aspects of human endeavor. Determining species boundaries traditionally used morphology. Phylogenetic analyses based on DNA sequence data provide a means to resolve species boundaries, as well as test hypotheses regarding the evolutionary processes. Numerous species radiations have occurred in Western North America. Among these are several plant groups such as Astragalus, Artemisia, and Lomatium. Recent phylogenetic analyses of Lomatium and related genera have demonstrated that many of the morphological characters used to delimit taxa have arisen multiple times and that most taxa are para- …

Resolving Relationships At The Animal-Fungal Divergence: A Molecular Phylogenetic Approach For Understanding The Ecology And Evolution Of The Protist Trichomycetes, Nicole K. Reynolds

Boise State University Theses and Dissertations

The Ichthyosporea (= Mesomycetozoea) is a relatively understudied class of unicellular symbionts that molecular phylogenies have placed at the divergence of animals and fungi. Subsumed in this class are the cosmopolitan families Eccrinidae and Amoebidiidae (referred to as “protist trichos” or “trichos” herein), which are considered obligate commensal endobionts of various arthropods, including marine, freshwater and terrestrial hosts. Once thought to be members of the fungal class Trichomycetes due to their hyphal-like growth form and ecological similarity, molecular evidence has necessitated reclassification. However, evolutionary relationships within and between them are still unclear as the number of taxa sampled and/or the …

Influence Of Wildfire Disturbance And Post-Fire Seeding On Vegetation And Insects In Sagebrush Habitats, Ashley T. Rohde

Boise State University Theses and Dissertations

Disturbance events alter community composition and structure because of differences in resistance and resilience of individual taxa, changes in habitat resulting in colonization by new taxa and alteration of biotic interaction patterns. Recent changes in disturbance types, frequencies and intensities caused by anthropogenic activities may further alter community composition and structure if these disturbances exceed the tolerances or adaptations of some taxa. In sagebrush steppe habitats of the western United States, wildfire is the current dominant disturbance type, burning millions of hectares annually. Further, up to 90% of sagebrush-steppe ecosystems are affected by anthropogenic influences such as invasive species. Post-fire …

Distribution Of Chinook Salmon (Oncorhynchus Tshawytscha) In Upper-Columbia River Sub-Basins From Environmental Dna Analysis, Matthew Benjamin Laramie

Boise State University Theses and Dissertations

Determining accurate species distribution is crucial to conservation and management strategies for imperiled species, but challenging for small populations that are approaching extinction or being reestablished. We evaluated the efficacy of environmental DNA (eDNA) analysis for improving detection and thus known distribution of Chinook salmon in the Methow and Okanogan Sub-basins of the Upper-Columbia River, Washington, USA. We developed an assay to target a 90 base pair sequence of Chinook DNA and used quantitative polymerase chain reaction (qPCR) to quantify the amount of Chinook eDNA in 1-L water samples collected at 48 sites in the sub-basins. We collected samples once …

Warming Winters And Changing Habitats: Interactive Effects On Raptor Populations And Implications For Conservation, Neil A. Paprocki

Boise State University Theses and Dissertations

Studies across multiple spatial and temporal scales will improve understanding of the drivers of global change including habitat degradation, invasive species, and climate change. How global drivers affect the ecology of wintering raptors in western North America and the Great Basin may have important implications for changes in distribution and abundance, and consequently population persistence. I examined the winter distributions of six western North America raptor species using Christmas Bird Count data from 1975-2011 to assess range shifts over time and in relation to temperature. Also, I considered whether population patterns within Bird Conservation Regions (BCR) were best explained by …

Costs And Benefits Of Variable Nest Density In Burrowing Owls: Effects On Predation, Ectoparasites, Egg Yolk Hormones, And Productivity, Justin Lamar Welty

Boise State University Theses and Dissertations

Nesting density in birds is influenced by a number of factors including food availability, predation, and breeding site availability. As a result of a species’ nesting density, individuals incur certain costs and benefits related to predation rates, parasite levels, and productivity. I evaluated hypotheses related to these costs and benefits in burrowing owls (Athene cunicularia hypugaea) that nested within the Morley Nelson Snake River Birds of Prey National Conservation Area in southern Idaho. I calculated territory overlap, an index of nesting density, of actual nests by creating a 200m radius buffer around each nest and measuring the percentage …

Reproductive Failure And The Stress Response In American Kestrels Nesting Along A Human Disturbance Gradient, Erin Hennegan Strasser

Boise State University Theses and Dissertations

Human disturbance may be an influential environmental stressor that affects birds across life stages. I examined whether external and endogenous factors including habitat type, habitat quality and individual quality (hereafter quality), or human disturbance affect American Kestrel reproductive success in southwestern Idaho. Specifically, I was interested in how these factors lead to nest failure or abandonment. I also investigated whether elevated corticosterone (CORT) concentrations mediate the relationships among explanatory variables and nest failure. As nestling kestrels may respond to stressors differently from adults, I examined whether conditions experienced during the nestling stage affected nestling American Kestrel (Falco sparverius) hypothalamic pituitary …

Exploring Red-Tailed Hawk Migration Using Stable Isotope Analysis And Dna Sexing Techniques, Kara Clare Donohue

Boise State University Theses and Dissertations

Understanding the movements of migratory birds and connecting the different stages of their annual cycle is necessary for the conservation and management of migratory bird species. Stable isotope technology has the potential to shed light on the movements of migratory species and to help us better understand their population dynamics. Several studies use stable hydrogen isotopes in particular to predict origins of birds sampled during migration or in winter. However, recent work on stable hydrogen isotopes in feathers (δD_f) draws into question the utility of this technology in estimating origins of migrants. My objective was to determine whether …