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Fishes Of The Columbia And Snake River Basins In Eastern Washington, Allan T. Scholz, Holly J. Mclellan, Fisheries Research Center, Eastern Washington University

Biology Faculty Publications

"This book was prepared through a grant from the United States Department of the Interior, Bureau of Land Management (BLM)."

Chapter 1 Introduction, Chapter 2 Checklist of Fishes Found in Eastern Washington, Chapter 3 Fish Identification and Classification Aids to Identification of Fishes, Chapter 4 Key to Families of Eastern Washington Fishes, Chapter 5 Family Petromyzontidae: Lampreys, Chapter 6 Family Acipenseridae: Sturgeon, Chapter 7 Family Clupeidae: Herrings, Chapter 8 Family Cyprinidae: Carps and Minnows, Chapter 9 Family Catostomidae: Suckers, Chapter 10 Family Ictaluridae: Bullhead Catfishes, Chapter 11 Family Esocidae: Pikes, Chapter 12 Family Salmonidae: Salmon, Trout, Whitefish, Grayling, Chapter 13 …

Quantitative Pcr Assay For Mycobacterium Pseudoshottsii And Mycobacterium Shottsii And Application To Environmental Samples And Fishes From The Chesapeake Bay, D. T. Gauthier, K. S. Reece, J. Xiao, M. W. Rhodes, H. I. Kator, R. J. Latour, C. F. Bonzek, J. M. Hoenig, W. K. Vogelbein

Biological Sciences Faculty Publications

Striped bass (Morone saxatilis) in the Chesapeake Bay are currently experiencing a very high prevalence of mycobacteriosis associated with newly described Mycobacterium species, Mycobacterium pseudoshottsii and M. shottsii. The ecology of these mycobacteria outside the striped bass host is currently unknown. In this work, we developed quantitative real-time PCR assays for M. pseudoshottsii and M. shottsii and applied these assays to DNA extracts from Chesapeake Bay water and sediment samples, as well as to tissues from two dominant prey of striped bass, Atlantic menhaden (Brevoortia tyrannus) and bay anchovy (Anchoa mitchilli). Mycobacterium …

A Community-Based Monitoring Program For Introduced Marine Pests, Samantha D. Bridgwood, Justin I. Mcdonald

Fisheries research reports

No abstract provided.

Codium Fragile Ssp. Fragile (Suringar) Hariot Summary Document, Samantha Bridgwood

Fisheries research reports

Codium fragile ssp. fragile is a large branching green alga which typically grows between 15 to 60 cm tall but can attain almost 1 m in length and weigh up to 3.5 kg. In wave exposed areas the C. fragile ssp. fragile plants tends to be shorter as they undergo more frequent fragmentation (D’Amours & Scheibling 2007).

Hull Camera: Preliminary Design And Testing Of Its Use For Assessing Biofouling On Small (<12 M) Recreational Vessels, Samantha D. Bridgwood

Fisheries research reports

No abstract provided.

The Impact Of Rare Taxa On A Fish Index Of Biotic Integrity, Haibo Wan, Christopher J. Chizinski, Christine L. Dolph, Bruce Vondracek, Bruce N. Wilson

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

The index of biotic integrity (IBI) is a commonly used bioassessment tool that integrates abundance and richness measures to assess water quality. In developing IBIs that are both responsive to human disturbance and resistant to natural variability and sampling error, water managersmust decide how to weigh information about rare and abundant taxa, which in turn requires an understanding of the sensitivity of indices to rare taxa. Herein, we investigated the influence of rare fish taxa (within the lower 5% of rank abundance curves) on IBI metric and total scores for stream sites in two of Minnesota’smajor river basins, the St. …

The Index Of Biological Integrity And The Bootstrap: Can Random Sampling Error Affect Stream Impairment Decisions?, Christine L. Dolph, Aleksey Y. Sheshukov, Christopher J. Chizinski, Bruce Vondracek, Bruce N. Wilson

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Multimetric indices, such as the Index of Biological Integrity (IBI), are increasingly used bymanagement agencies to determine whether surface water quality is impaired. However, important questions about the variability of these indices have not been thoroughly addressed in the scientific literature. In this study, we used a bootstrap approach to quantify variability associated with fish IBIs developed for streams in two Minnesota river basins. We further placed this variability into a management context by comparing it to impairment thresholds currently used in water quality determinations for Minnesota streams. We found that 95% confidence intervals ranged as high as 40 points …

Absence Of Predation Eliminates Coexistence: Experience From The Fish-Zooplankton Interface, Z. M. Gilwicz, Wayne A. Wurtsbaugh, E. Szymansk

Watershed Sciences Faculty Publications

Examples from fishless aquatic habitats show that competition among zooplankton for resources instigates rapid exclusion of competitively inferior species in the absence of fish predation, and leads to resource monopolization by the superior competitor. This may be a single species or a few clones with large body size: a cladoceran such as Daphnia pulicaria, or a branchiopod such as Artemia franciscana, each building its population to a density far higher than those found in habitats with fish. The example of zooplankton from two different fish-free habitats demonstrates the overpowering force of fish predation by highlighting the consequences of its absence. …

Endangered And Threatened Wildlife And Plants; Designation Of Critical Habitat For The Salt Creek Tiger Beetle

United States Fish and Wildlife: Staff Publications

We, the U.S. Fish and Wildlife Service (Service/USFWS), designate critical habitat for the Salt Creek tiger beetle (Cicindela nevadica lincolniana) under the Endangered Species Act of 1973, as amended (Act). In total, approximately 1,933 acres (ac) (782 hectares (ha)) located in Lancaster and Saunders Counties, Nebraska, fall within the boundaries of the critical habitat designation.

Assessment Of Selenium And Atrazine Exposure And Effects To Wildlife At The North Platte National Wildlife Refuge, Scottsbluff, Nebraska, Matthew S. Schwarz, Christina D. Lydick

United States Fish and Wildlife: Staff Publications

This study evaluated selenium and atrazine exposure and effects to fish and wildlife at North Platte National Wildlife Refuge (Refuge) in Scotts Bluff County, Nebraska. Atrazine was detected in 2 of 54 water samples and at low concentrations that are not of concern. However, concentrations of selenium and strontium exceeded toxicity guidelines in water, sediment, invertebrates, whole-body fish and wood duck eggs. Concentrations of selenium in water at Refuge sites frequently exceeded a 2 μg/L total recoverable threshold for selenium bioaccumulation and were greatest at Stateline Island (9.7 μg/L) and Little Lake Alice (24 μg/L). In sediments, strontium concentrations were …

Controlling Excess Capacity In Common-Pool Resource Industries: The Transition From Input To Output Controls, D Squires, Y Jeon, Rq Grafton, J Kirkley

VIMS Articles

Overcapacity is a major problem in common-pool resources. Regulators increasingly turn from limited entry to individual transferable use rights to address overcapacity. Using individual vessel data from before and after the introduction of individual harvest rights into a fishery, the paper investigates how characteristics of rights, scale of operations and transition period affect changes in individual and fleet capacity utilisation and excess capacity. The results indicate that individual harvest rights in both theory and practice offer the potential to address the problem of overcapacity in common-pool resources currently managed with limited-entry regulations.

Temperature Effects On Growth, Colony Development And Carbon Partitioning In Three Phaeocystis Species, Xd Wang, Kw Tang, Y Wang, Walker O. Smith Jr.

VIMS Articles

Phaeocystis is an ecologically important marine phytoplankton genus that is globally distributed. We examined the effects of temperature on the 3 most common species: P. globosa, P. antarctica, and P. pouchetii, which grew at 16-32, 0-6, and 4-8 degrees C, respectively. P. pouchetii did not form colonies; P. globosa formed colonies at 16, 20, and 24 degrees C, and P. antarctica colonies were observed at all temperatures. More cells were partitioned into the colonial form at lower temperatures than at higher temperatures for P. globosa and P. antarctica. P. globosa colony size decreased with temperature, whereas P. antarctica colony size …

A Molecular Genetic Investigation Of The Population Structure Of Atlantic Menhaden (Brevoortia Tyrannus), Abigail J. Lynch, Jan E. Mcdowell, John Graves

VIMS Articles

Atlantic menhaden (Brevoortia tyrannus), through landings, support one of the largest commercial fisheries in the United States. Recent consolidation of the once coast-wide reduction fishery to waters within and around Chesapeake Bay has raised concerns over the possibility of the loss of unique genetic variation resulting from concentrated fishing pressure. To address this question, we surveyed variation at the mitochondrial cytochrome c oxidase subunit I (COI) gene region and seven nuclear microsatellite loci to evaluate stock structure of Atlantic menhaden. Samples were collected from up to three cohorts of Atlantic menhaden at four geographic locations along the U.S. Atlantic coast …

Spawning-Related Movements Of Barred Sand Bass Paralabrax Nebulifer, In Southern California: Interpretations From Two Decades Of Historical Tag And Recapture Data, E. T. Jarvis, Christi Linardich, C. F. Valle

Biological Sciences Faculty Publications

During the 1960s and 1990s, the California Department of Fish and Game tagged 8,634 barred sand bass in southern California, and 972 fish (11%) were recaptured. Tag returns suggest barred sand bass are transient aggregate spawners that form spawning aggregations consisting of both resident and migrant individuals. Spawning residency at a historic spawning location was estimated by the frequency of returns over time; most same-year returns (82%, n  =  141) were recaptured within a 7 to 35-day period. The maximum recapture distance was 92 km. The average (± SD) non-spawning season recapture distance from peak spawning season tagging locations was …

Physiological And Toxicological Effects Of Pb Plus Cd Mixtures On Rainbow Trout (Oncorhynchus Mykiss) In Soft Acidic Water, Yvonne Kara

Theses and Dissertations (Comprehensive)

The ability of a metal to cause toxicity in aquatic environments is highly dependant upon the water chemistry, which can influence metal bioavailability. Metal bioavailability is affected by the concentration of the metal, complexation of the metal by organic and inorganic ligands, and by the speciation of the metal. Predictive models of metal toxicity, such as the biotic ligand model (BLM) have mainly focused upon predicting the toxicity of individual metals rather than the toxicity of metals in mixtures, which are more commonly found in contaminated waters. Two metals that are commonly found together are Pb and Cd which can …

The Volunteer Fisheries Liaison Officer (Vflo) Program: An Analysis Of Recreational Fishing Data From 1995 - 2007, Claire B. Smallwood, Adrian Thomson, David Harris, Danielle Johnston

Fisheries research reports

The aim of this report was to explore the data collected by VFLOs from 1995 - 2007 in each of the state’s four marine bioregions. During this period, volunteers undertook >2,000 days of activities, the majority of which were educational displays at events such as boat shows and patrols in coastal, marine and estuarine environs. Patrols focused on interviews with recreational anglers to provide information about sustainable fishing and collect data on catch and effort.

Habitat Utilization And Dive Characterization Of Blue Marlin (Makaira Nigricans) And White Marlin (Kajikia Albida) In The Western Atlantic Ocean, Daniel J. Dutton

Dissertations, Theses, and Masters Projects

Blue marlin Makaira nigricans and white marlin Kajikia albida (formerly Tetrapturus albidus) are overfished in the Atlantic Ocean, with the vast majority of fishing mortality resulting from the pelagic longline fishery that targets tunas (Thunnus spp.) and swordfish Xiphias gladius. Time series of catch-per-unit-effort (CPUE) data have been fundamental to assessments of blue marlin and white marlin stocks, but these time series have been affected by a shift over time in pelagic longline fishing practices from shallow to deeper sets. One method for adjusting CPUE data for changes in fishing practices is a habitat-based standardization that modifies fishing effort in …

The Impact Of Conservation On The Status Of The World's Vertebrates, M Hoffmann, C Hilton-Taylor, A Angulo, M Bohm, Tm Brooks, Et Al.

VIMS Articles

Using data for 25,780 species categorized on the International Union for Conservation of Nature Red List, we present an assessment of the status of the world's vertebrates. One-fifth of species are classified as Threatened, and we show that this figure is increasing: On average, 52 species of mammals, birds, and amphibians move one category closer to extinction each year. However, this overall pattern conceals the impact of conservation successes, and we show that the rate of deterioration would have been at least one-fifth again as much in the absence of these. Nonetheless, current conservation efforts remain insufficient to offset the …

Changes In Age Composition And Growth Characteristics Of Atlantic Sturgeon (Acipenser Oxyrinchus Oxyrinchus) Over 400 Years, Mt Balazik, Gc Garman, Ml Fine, Ch Hager, Sp Mcininch

VIMS Articles

Populations of sturgeon (Acipenseridae) have experienced global declines, and in some cases extirpation, during the past century. In the current era of climate change and over-harvesting of fishery resources, climate models, based on uncertain boundary conditions, are being used to predict future effects on the Earth's biota. A collection of approximately 400-year-old Atlantic sturgeon spines from a midden in colonial Jamestown, VA, USA, allowed us to compare the age structure and growth rate for a pre-industrial population during a 'mini-ice age' with samples collected from the modern population in the same reach of the James River. Compared with modern fish, …

Challenges Of Modeling Depth-Integrated Marine Primary Productivity Over Multiple Decades: A Case Study At Bats And Hot, Vs Saba, Mam Friedrichs, Me Carr, D Antoine, Ra Armstrong, Et Al.

VIMS Articles

The performance of 36 models (22 ocean color models and 14 biogeochemical ocean circulation models (BOGCMs)) that estimate depth-integrated marine net primary productivity (NPP) was assessed by comparing their output to in situ C-14 data at the Bermuda Atlantic Time series Study (BATS) and the Hawaii Ocean Time series (HOT) over nearly two decades. Specifically, skill was assessed based on the models' ability to estimate the observed mean, variability, and trends of NPP. At both sites, more than 90% of the models underestimated mean NPP, with the average bias of the BOGCMs being nearly twice that of the ocean color …

Dead In The Water: The Fate Of Copepod Carcasses In The York River Estuary, Virginia, Dt Elliott, Courtney K. Harris, Kw Tang

VIMS Articles

Using laboratory and field experiments we investigated three fates of copepod carcass organic matter in the York River estuary, Virginia: ingestion by planktivores (necrophagy), microbial decomposition, and removal by gravitational settling in the presence of turbulence (sinking). The ctenophore Mnemiopsis leidyi ingested live copepods and carcasses indiscriminately in feeding experiments. Microbial decomposition led to ca. 50% of carcass dry weight loss within 8 h after death. Carcass settling velocities in still water were ca. 0.1 cm s(-1), implying short residence time (hours) in the shallow estuary. However, turbulent mixing kept carcasses in suspension much of the time, reducing sinking losses. …

Using Traps For Catfish In Virginia Tidal Rivers, James Bristow

Reports

The project tested a different way to commercially fish for catfish in the tidal rivers, while allowing by-catch and smaller catfish to escape. Ten traps were constructed of coated wire mesh and steel rod, equipped with an entry funnel, and fished alongside three strings of trot-lines in the same area and times. The test period covered September and October 2010 over a period of warm weather when salinity changed dramatically from 10 ppt to zero and water temperatures eased downward from 68 degrees to 60 degrees.

The trap design and all boat modifications operated as designed with only a few …

Spatial And Temporal Variation In Otolith Chemistry For Tautog (Tautoga Onitis) In Narragansett Bay And Rhode Island Coastal Ponds, Ivan Mateo, Edward G. Durbin, David A. Bengtson, Richard Kingsley, Peter K. Swart, Daisy Durant

Fisheries, Animal and Veterinary Sciences Faculty Publications

The elemental composition of otoliths may provide valuable information for establishing connectivity between fish nursery grounds and adult fish populations. Concentrations of Rb, Mg, Ca, Mn, Sr, Na, K, Sr, Pb, and Ba were determined by using solution-based inductively coupled plasma mass spectrometry in otoliths of young-of-the year tautog (Tautoga onitis) captured in nursery areas along the Rhode Island coast during two consecutive years. Stable oxygen (δ¹⁸O) and carbon (δ¹³C) isotopic ratios in young-of-the year otoliths were also analyzed with isotope ratio mass spectrometry. Chemical signatures differed significantly among the distinct nurseries within Narragansett …

State Of The River Report For The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, And Contaminants 2010, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University

State of the River Report

No abstract provided.

Reconstructing Early 17th Century Estuarine Drought Conditions From Jamestown Oysters, Jm Harding, Hj Spero, R Mann, Gs Herbert, Jl Sliko

VIMS Articles

Oysters (Crassostrea virginica) were a central component of the Chesapeake Bay ecosystem in 1607 when European settlers established Jamestown, VA, the first permanent English settlement in North America. These estuarine bivalves were an important food resource during the early years of the James Fort (Jamestown) settlement while the colonists were struggling to survive in the face of inadequate supplies and a severe regional drought. Although oyster shells were discarded as trash after the oysters were eaten, the environmental and ecological data recorded in the bivalve geochemistry during shell deposition remain intact over centuries, thereby providing a unique window into conditions …

Observations Of Distribution, Size, And Sex Ratio Of Mature Blue Crabs, Callinectes Sapidus, From A Chesapeake Bay Tributary In Relation To Oyster Habitat And Environmental Factors, Jm Harding, R Mann

VIMS Articles

Blue crabs Callinectes sapidus (Rathbun, 1896) > 100 mm carapace width were sampled from a constructed oyster reef (1996 and 1997), a sand bar (1997) and a natural oyster bar (1997) in the Piankatank River, Chesapeake Bay, USA to describe habitat use, sex ratios, and demographics across a gradient of habitat types. Patterns of blue crab catch-per-unit-effort (CPUE), and demographics were similar on the oyster reef in 1996 and 1997. Average annual CPUE on the reef was 6-8 crabs pot(-1) with maximum CPUE of 15 crabs pot(-1). Daylength and water temperature significantly affected reef CPUE with more crabs observed in late …

Bacteria Dispersal By Hitchhiking On Zooplankton, Hp Grossart, C Dziallas, F Leunert, Kw Tang

VIMS Articles

Microorganisms and zooplankton are both important components of aquatic food webs. Although both inhabit the same environment, they are often regarded as separate functional units that are indirectly connected through nutrient cycling and trophic cascade. However, research on pathogenic and nonpathogenic bacteria has shown that direct association with zooplankton has significant influences on the bacteria's physiology and ecology. We used stratified migration columns to study vertical dispersal of hitchhiking bacteria through migrating zooplankton across a density gradient that was otherwise impenetrable for bacteria in both upward and downward directions (conveyor-belt hypothesis). The strength of our experiments is to permit quantitative …

An Expansion Of The Msvpa Approach For Quantifying Predator-Prey Interactions In Exploited Fish Communities, Lp Garrison, Js Link, Dp Kilduff, Md Cieri, B Maffley, Rj Latour, Et Al.

VIMS Articles

Ecosystem-based fisheries management requires tools to place fish-stock dynamics in the broader context of fishery, predator, and competitive removals. Multispecies virtual population analysis (MSVPA) is an approach to quantifying predator prey interactions and estimating the rates of predation mortality for exploited fish populations. Here, an extended MSVPA (MSVPA-X) is presented as an alternative to existing MSVPA approaches. Notably, MSVPA-X uses index-tuned VPA methods, applies a more flexible feeding model, and includes an alternative functional feeding response. The MSVPA-X model is applied to a western Atlantic fish community, focusing on Atlantic menhaden and its major fish predators, and a sensitivity analysis …

Ulcerative Disease Outbreak In Crayfish Orconectes Propinquus Linked To Saprolegnia Australis In Big Muskellunge Lake, Wisconsin, L Krugner-Higby, D Haak, Ptj Johnson, Jeffrey D. Shields, Wm Jones, Kimberly S. Reece, Et Al.

VIMS Articles

Crayfish populations in the area of the North Temperate Lakes Long Term Ecological Research (LTER) project, Wisconsin, USA, have been monitored for >25 yr. In 2005, native crayfish Orconectes propinquus from Big Muskellunge Lake were found with ulcerated lesions in the cuticle In 2006, lesions occurred in 9 5% of sampled crayfish from the lake (n = 3146). Ulcers generally occurred on the appendages of affected individuals but varied in location and severity. The prevalence of ulcers varied widely among sites, sample depths, and sampling dates, ranging from 20% The prevalence of ulcers in crayfish increased from a minimum in …

Effluent Organic Nitrogen (Eon): Bioavailability And Photochemical And Salinity-Mediated Release, Da Bronk, Qn Roberts, Mp Sanderson, Ea Canuel, Pg Hatcher, Et Al.

VIMS Articles

The goal of this study was to investigate three potential ways that the soluble organic nitrogen (N) fraction of wastewater treatment plant (WWTP) effluents, termed effluent organic N (EON), could contribute to coastal eutrophication - direct biological removal, photochemical release of labile compounds, and salinity-mediated release of ammonium (NH4+). Effluents from two WWTPs were used in the experiments. For the bioassays, EON was added to water from four salinities (similar to 0 to 30) collected from the James River (VA) in August 2008, and then concentrations of N and phosphorus compounds were measured periodically over 48 h. Bioassay results, based …